Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

61645055 .. 61646714

Gene Structure 1660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG359200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTTGAGGTTGCAGGCATTTTCAATTCCCGACTACAATCATGTGACCTTTCCCTCCTCACACGTCATTCCTACTTCACTCCATCTCCACCGTCAGTGTGTATCTTTTCCCACCACACTGGCGCGTTTCCGTTCACTCCCTACCGTCAGGATATGCAGCACTTCCCTTGCATGCGATTTCGGAGGTGGCATAGGAATGAGTGGTTTTTATGATGTTGAGCTTAAAGTCCGCGACTATGAGCTTGATCAGTATGGCGTCGTTAACAATGCTGTCTATGCAAGTTATTGCCAGCACGGTCTTCATGAACTTCTTGAAGGGGTTGGCATGAGTGCTGATGCAGTTGCCCGAACCGGTGAAGCATTCGCTTTATCAGAATTGTCTCTGAAATTCATTGCACCTCTAAAGAGTGGAGACAAGTTTGTCATAAAGGTCGGGATGACCCACTCCTCAGCCGCTCGCGTGTACTTTGATCAGTTCATTTTCAAGCTGCCGAATCTAGAGCCTATCTTGGAAGCAAAGGCCACAGCAGTGTGGCTTGATAAAGGCTATCGCCCTGTCCGTATTCCGTCGGAGGTGACATCCAAATTTGTCCAGTTTCGTCGCCATAAGGAGTCTAACGGTGTCCTGCACAACGGAGTTGGTCCCAGGGAAAGTCTTCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

221

Amino Acids

24.64

Weight (kDa)

8.87

Isoelectric Point (pI)

33.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	76 - 196	6.7e-15	Thioesterase-like superfamily
4HBT	PF03061	84 - 165	4.7e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	455
AccII	CGCG	3 cut(s)	124, 231, 459
AciI	CCGC	2 cut(s)	229, 453
AcsI	RAATTY	2 cut(s)	386, 584
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	464
AflIII	ACRYGT	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	24, 314, 484
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	644
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	3 cut(s)	220, 241, 487
AluI	AGCT	3 cut(s)	220, 241, 487
Alw26I	GTCTC	2 cut(s)	384, 405
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	2 cut(s)	156, 487
ApoI	RAATTY	2 cut(s)	386, 584
AsiGI	ACCGGT	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	641
AsuHPI	GGTGA	2 cut(s)	365, 586
AvaII	GGWCC	1 cut(s)	641
BbsI	GAAGAC	2 cut(s)	290, 647
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	168, 474
BccI	CCATC	1 cut(s)	90
BciT130I	CCWGG	1 cut(s)	646
BclI	TGATCA	2 cut(s)	244, 469
BcoDI	GTCTC	2 cut(s)	384, 405
BfaI	CTAG	1 cut(s)	497
BisI	GCNGC	3 cut(s)	157, 453, 488
BlsI	GCNGC	3 cut(s)	158, 454, 489
Bme1390I	CCNGG	1 cut(s)	646
Bme18I	GGWCC	1 cut(s)	641
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	641
BmiI	GGNNCC	1 cut(s)	643
BmrFI	CCNGG	1 cut(s)	646
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	2 cut(s)	290, 647
Bpu10I	CCTNAGC	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	644, 645
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	2 cut(s)	123, 592
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	2 cut(s)	644, 645
BseGI	GGATG	2 cut(s)	441, 578
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	123, 592
BseRI	GAGGAG	2 cut(s)	46, 436
BseXI	GCAGC	2 cut(s)	168, 474
BsgI	GTGCAG	1 cut(s)	611
Bsh1236I	CGCG	3 cut(s)	124, 231, 459
BshFI	GGCC	1 cut(s)	521
BshTI	ACCGGT	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	627
BsmAI	GTCTC	2 cut(s)	384, 405
BsmFI	GGGAC	1 cut(s)	627
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	244, 469
BspACI	CCGC	2 cut(s)	229, 453
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	1 cut(s)	461
BspFNI	CGCG	3 cut(s)	124, 231, 459
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	643
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	123, 592
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	644, 645
BssMI	GATC	2 cut(s)	244, 469
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	4 cut(s)	92, 145, 296, 620
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	15, 172, 290, 457
BstDEI	CTNAG	1 cut(s)	448
BstF5I	GGATG	2 cut(s)	441, 578
BstFNI	CGCG	3 cut(s)	124, 231, 459
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	2 cut(s)	247, 472
BstMAI	GTCTC	2 cut(s)	384, 405
BstMBI	GATC	2 cut(s)	244, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	646
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	644
BstUI	CGCG	3 cut(s)	124, 231, 459
BstV1I	GCAGC	2 cut(s)	168, 474
BstV2I	GAAGAC	2 cut(s)	290, 647
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	521
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	441, 578
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	3 cut(s)	101, 116, 534
Cac8I	GCNNGC	4 cut(s)	15, 172, 290, 457
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	641
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	463
CspAI	ACCGGT	1 cut(s)	350
CviAII	CATG	4 cut(s)	41, 171, 302, 325
CviJI	RGCY	8 cut(s)	220, 241, 452, 487, 502, 521, 535, 546
CviKI_1	RGCY	8 cut(s)	220, 241, 452, 487, 502, 521, 535, 546
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	2 cut(s)	246, 471
DpnII	GATC	2 cut(s)	244, 469
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	641
EcoRII	CCWGG	1 cut(s)	644
FaeI	CATG	4 cut(s)	44, 174, 305, 328
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	4 cut(s)	40, 170, 301, 324
FbaI	TGATCA	2 cut(s)	244, 469
Fnu4HI	GCNGC	3 cut(s)	157, 453, 488
FokI	GGATG	2 cut(s)	448, 565
Fsp4HI	GCNGC	3 cut(s)	157, 453, 488
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	3 cut(s)	157, 453, 488
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	1 cut(s)	351
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	44, 174, 305, 328
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	2 cut(s)	493, 611
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	2 cut(s)	365, 586
Hpy166II	GTNNAC	3 cut(s)	134, 262, 463
Hpy188I	TCNGA	4 cut(s)	182, 373, 384, 571
Hpy188III	TCNNGA	6 cut(s)	29, 148, 302, 311, 433, 497
Hpy8I	GTNNAC	3 cut(s)	134, 262, 463
Hpy99I	CGWCG	3 cut(s)	260, 571, 603
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	4 cut(s)	92, 145, 296, 620
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	7 cut(s)	13, 156, 170, 278, 338, 395, 628
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	448
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	44, 174, 305, 328
HspAI	GCGC	1 cut(s)	122
Ksp22I	TGATCA	2 cut(s)	244, 469
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	244, 469
LpnPI	CCDG	9 cut(s)	104, 133, 302, 364, 567, 605, 631, 638, 658
Lsp1109I	GCAGC	2 cut(s)	168, 474
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	3 cut(s)	43, 574, 659
MalI	GATC	2 cut(s)	246, 471
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	2 cut(s)	244, 469
MboII	GAAGA	2 cut(s)	290, 647
MluCI	AATT	4 cut(s)	24, 374, 386, 584
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	549
MnlI	CCTC	6 cut(s)	64, 67, 176, 408, 457, 565
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	2 cut(s)	222, 261
MslI	CAYNNNNRTG	2 cut(s)	194, 527
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	646
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	646
MvnI	CGCG	3 cut(s)	124, 231, 459
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	2 cut(s)	244, 469
NlaIII	CATG	4 cut(s)	44, 174, 305, 328
NlaIV	GGNNCC	1 cut(s)	643
NmuCI	GTSAC	2 cut(s)	43, 574
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	174
PagI	TCATGA	1 cut(s)	301
PasI	CCCWGGG	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PctI	GAATGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	1 cut(s)	493
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	158, 454, 489
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	1 cut(s)	643
PspPI	GGNCC	1 cut(s)	641
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	2 cut(s)	194, 527
SaqAI	TTAA	2 cut(s)	222, 261
SatI	GCNGC	3 cut(s)	157, 453, 488
Sau3AI	GATC	2 cut(s)	244, 469
Sau96I	GGNCC	1 cut(s)	641
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	646
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	641
SmiMI	CAYNNNNRTG	2 cut(s)	194, 527
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	4 cut(s)	24, 374, 386, 584
SsiI	CCGC	2 cut(s)	229, 453
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	644
TaaI	ACNGT	4 cut(s)	92, 145, 296, 620
TaiI	ACGT	1 cut(s)	66
TasI	AATT	4 cut(s)	24, 374, 386, 584
TatI	WGTACW	1 cut(s)	462
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	2 cut(s)	222, 261
Tru9I	TTAA	2 cut(s)	222, 261
TscAI	CASTG	3 cut(s)	101, 123, 534
TseFI	GTSAC	2 cut(s)	43, 574
TseI	GCWGC	2 cut(s)	156, 487
Tsp45I	GTSAC	2 cut(s)	43, 574
TspDTI	ATGAA	4 cut(s)	290, 318, 379, 466
TspGWI	ACGGA	4 cut(s)	119, 548, 555, 648
TspRI	CASTG	3 cut(s)	101, 123, 534
VpaK11BI	GGWCC	1 cut(s)	641
XapI	RAATTY	2 cut(s)	386, 584
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	174
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.