Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038458.1

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 3538

Gene Structure 3538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038458.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1061 bp

atgttgaggttgcaggcattttcaattcccgactacaatcatgtgacctttccctcctcacacgtcattccttcttcactccatctccaccgtcagtgggtatcttttcccaccacactggcgcgtttccgatcactccctaccgtcaggatatgcagcacttcccttgcatgcgatttcggaggtggcataggaatgagtggtttttatgatgttgagcttaaagtccgcgactatgagcttgatcagtatggcgtcgttaacaatgctgtctatgcaagttattgccagcacggtcttcatgaacttcttgaaggggttggcatgagtgctgatgcagttgcccgaaccggtgaagcattcgctttatcagaattgtctctgaaattcatcgcacctctgaagagtggagacaagtttgtcataaaggtcgggatgacccactcctcagcagctcgcgtgtactttgatcagttcattttcaagctgccaaatctagagcctatcttggaagcaaaggccacagcagtgtggcttgataaaggctatcgcccagtccgtattccatcggaggtgacatctaaatttgtccagtttcgtcgccataaggagtctaacggtgtcctgcacaacggagttggtcccagggaaagtcttcagtgggaattaacggagcagcagggagaggagaagatgaagaagaaggtgatggtggcaattgatgagagcgagcttagccactacgcgctagaatggaccctcgaaaatcttggcaacaccattcataattctgagctactcgtcttcactgcacagcccaccaccattgattttgctcctgagctggtagcagctatacaagaaaactacaagaaggtggcattggtttgctggataaagctaaagacatctgcgccaaccatggggtggattacaatttctattgttgcagagacagtgacagaggttggtgatcctaaaaaggcaatatgtgaagcggtagaaaaattcaacatcgagttactaatactaggcagtcatggtcgaggaactgtacaaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

353

Amino Acids

39.35

Weight (kDa)

6.32

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccB7I	CCANNNNNTGG	1 cut(s)	927
AccII	CGCG	4 cut(s)	124, 231, 459, 746
AciI	CCGC	2 cut(s)	229, 998
AclWI	GGATC	1 cut(s)	968
AcsI	RAATTY	3 cut(s)	386, 584, 1007
AcuI	CTGAAG	2 cut(s)	422, 641
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	464, 1056
AfiI	CCNNNNNNNGG	3 cut(s)	97, 923, 927
AflIII	ACRYGT	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	24, 314, 484, 1012
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	644
AjuI	GAANNNNNNNTTGG	2 cut(s)	866, 898
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	9 cut(s)	220, 241, 455, 487, 733, 796, 844, 854, 901
AluI	AGCT	9 cut(s)	220, 241, 455, 487, 733, 796, 844, 854, 901
Alw26I	GTCTC	3 cut(s)	384, 405, 947
AlwI	GGATC	1 cut(s)	968
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	5 cut(s)	156, 452, 487, 676, 851
ApoI	RAATTY	3 cut(s)	386, 584, 1007
AsiGI	ACCGGT	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	654
AspLEI	GCGC	3 cut(s)	124, 748, 916
AspS9I	GGNCC	2 cut(s)	641, 756
AsuHPI	GGTGA	4 cut(s)	365, 586, 718, 983
AvaII	GGWCC	2 cut(s)	641, 756
BbsI	GAAGAC	3 cut(s)	290, 647, 796
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	5 cut(s)	168, 464, 474, 688, 863
BccI	CCATC	3 cut(s)	90, 574, 703
BciT130I	CCWGG	1 cut(s)	646
BclI	TGATCA	2 cut(s)	244, 469
BcoDI	GTCTC	3 cut(s)	384, 405, 947
BfaI	CTAG	3 cut(s)	497, 749, 1031
BisI	GCNGC	5 cut(s)	157, 453, 488, 677, 852
BlpI	GCTNAGC	1 cut(s)	734
BlsI	GCNGC	5 cut(s)	158, 454, 489, 678, 853
Bme1390I	CCNGG	1 cut(s)	646
Bme18I	GGWCC	2 cut(s)	641, 756
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	641, 756
BmiI	GGNNCC	2 cut(s)	643, 758
BmrFI	CCNGG	1 cut(s)	646
BmrI	ACTGGG	1 cut(s)	548
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	548
BpiI	GAAGAC	3 cut(s)	290, 647, 796
Bpu10I	CCTNAGC	2 cut(s)	448, 840
Bpu1102I	GCTNAGC	1 cut(s)	734
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	644, 645, 921
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 923, 927
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	3 cut(s)	123, 554, 592
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	3 cut(s)	644, 645, 921
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	3 cut(s)	97, 923, 927
BseMII	CTCAG	3 cut(s)	462, 783, 831
BseNI	ACTGG	3 cut(s)	123, 554, 592
BseRI	GAGGAG	3 cut(s)	46, 436, 701
BseXI	GCAGC	5 cut(s)	168, 464, 474, 688, 863
BsgI	GTGCAG	2 cut(s)	611, 795
Bsh1236I	CGCG	4 cut(s)	124, 231, 459, 746
BshFI	GGCC	1 cut(s)	521
BshTI	ACCGGT	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	3 cut(s)	97, 923, 927
BsmAI	GTCTC	3 cut(s)	384, 405, 947
BsmFI	GGGAC	1 cut(s)	627
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	521
Bsp1407I	TGTACA	1 cut(s)	1054
Bsp143I	GATC	4 cut(s)	131, 244, 469, 973
Bsp1720I	GCTNAGC	1 cut(s)	734
Bsp19I	CCATGG	1 cut(s)	921
BspACI	CCGC	2 cut(s)	229, 998
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	3 cut(s)	461, 784, 832
BspFNI	CGCG	4 cut(s)	124, 231, 459, 746
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	643, 758
BspPI	GGATC	1 cut(s)	968
BsrFI	RCCGGY	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	1054
BsrI	ACTGG	3 cut(s)	123, 554, 592
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	3 cut(s)	644, 645, 921
BssMI	GATC	4 cut(s)	131, 244, 469, 973
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	921
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	6 cut(s)	92, 145, 296, 620, 958, 1054
Bst6I	CTCTTC	1 cut(s)	398
BstACI	GRCGYC	1 cut(s)	255
BstAUI	TGTACA	1 cut(s)	1054
BstC8I	GCNNGC	5 cut(s)	15, 172, 290, 457, 731
BstDEI	CTNAG	4 cut(s)	448, 734, 792, 840
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	4 cut(s)	124, 231, 459, 746
BstHHI	GCGC	3 cut(s)	124, 748, 916
BstKTI	GATC	4 cut(s)	134, 247, 472, 976
BstMAI	GTCTC	3 cut(s)	384, 405, 947
BstMBI	GATC	4 cut(s)	131, 244, 469, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 735
BstNI	CCWGG	1 cut(s)	646
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	644
BstUI	CGCG	4 cut(s)	124, 231, 459, 746
BstV1I	GCAGC	5 cut(s)	168, 464, 474, 688, 863
BstV2I	GAAGAC	3 cut(s)	290, 647, 796
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	921
BtgZI	GCGATG	1 cut(s)	376
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	441
BtsI	GCAGTG	2 cut(s)	534, 807
BtsIMutI	CAGTG	6 cut(s)	101, 116, 534, 665, 807, 963
Cac8I	GCNNGC	5 cut(s)	15, 172, 290, 457, 731
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	3 cut(s)	124, 748, 916
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	641, 756
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	463, 1055
CspAI	ACCGGT	1 cut(s)	350
CspCI	CAANNNNNGTGG	2 cut(s)	808, 843
CviAII	CATG	6 cut(s)	41, 171, 302, 325, 922, 1040
CviQI	GTAC	2 cut(s)	463, 1055
DdeI	CTNAG	4 cut(s)	448, 734, 792, 840
DpnI	GATC	4 cut(s)	133, 246, 471, 975
DpnII	GATC	4 cut(s)	131, 244, 469, 973
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Eco130I	CCWWGG	1 cut(s)	921
Eco47I	GGWCC	2 cut(s)	641, 756
Eco57I	CTGAAG	2 cut(s)	422, 641
EcoRII	CCWGG	1 cut(s)	644
EcoT14I	CCWWGG	1 cut(s)	921
ErhI	CCWWGG	1 cut(s)	921
FaeI	CATG	6 cut(s)	44, 174, 305, 328, 925, 1043
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	6 cut(s)	40, 170, 301, 324, 921, 1039
FbaI	TGATCA	2 cut(s)	244, 469
Fnu4HI	GCNGC	5 cut(s)	157, 453, 488, 677, 852
FokI	GGATG	1 cut(s)	448
Fsp4HI	GCNGC	5 cut(s)	157, 453, 488, 677, 852
FspBI	CTAG	3 cut(s)	497, 749, 1031
GlaI	GCGC	3 cut(s)	123, 747, 915
GluI	GCNGC	5 cut(s)	157, 453, 488, 677, 852
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	1 cut(s)	351
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	3 cut(s)	124, 748, 916
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	6 cut(s)	44, 174, 305, 328, 925, 1043
Hin6I	GCGC	3 cut(s)	122, 746, 914
HinP1I	GCGC	3 cut(s)	122, 746, 914
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	611
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	4 cut(s)	365, 586, 718, 983
Hpy166II	GTNNAC	2 cut(s)	262, 463
Hpy188I	TCNGA	7 cut(s)	131, 182, 373, 384, 402, 571, 793
Hpy188III	TCNNGA	7 cut(s)	29, 148, 302, 311, 433, 497, 839
Hpy8I	GTNNAC	2 cut(s)	262, 463
Hpy99I	CGWCG	2 cut(s)	260, 603
HpyAV	CCTTC	4 cut(s)	81, 308, 697, 868
HpyCH4III	ACNGT	6 cut(s)	92, 145, 296, 620, 958, 1054
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	8 cut(s)	13, 156, 170, 278, 338, 628, 812, 950
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 735
HpyF3I	CTNAG	4 cut(s)	448, 734, 792, 840
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	6 cut(s)	44, 174, 305, 328, 925, 1043
HspAI	GCGC	3 cut(s)	122, 746, 914
Ksp22I	TGATCA	2 cut(s)	244, 469
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	131, 244, 469, 973
LmnI	GCTCC	2 cut(s)	673, 841
Lsp1109I	GCAGC	5 cut(s)	168, 464, 474, 688, 863
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	3 cut(s)	497, 749, 1031
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	4 cut(s)	43, 574, 958, 1020
MalI	GATC	4 cut(s)	133, 246, 471, 975
MboI	GATC	4 cut(s)	131, 244, 469, 973
MboII	GAAGA	8 cut(s)	66, 290, 415, 647, 703, 709, 712, 796
MfeI	CAATTG	1 cut(s)	717
MluCI	AATT	9 cut(s)	24, 374, 386, 584, 665, 717, 787, 936, 1007
MlyI	GAGTC	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	3 cut(s)	222, 261, 668
MslI	CAYNNNNRTG	2 cut(s)	194, 527
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	646
MunI	CAATTG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	646
MvnI	CGCG	4 cut(s)	124, 231, 459, 746
MwoI	GCNNNNNNNGC	2 cut(s)	275, 735
NcoI	CCATGG	1 cut(s)	921
NdeII	GATC	4 cut(s)	131, 244, 469, 973
NlaIII	CATG	6 cut(s)	44, 174, 305, 328, 925, 1043
NlaIV	GGNNCC	2 cut(s)	643, 758
NmuCI	GTSAC	3 cut(s)	43, 574, 958
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	174
PagI	TCATGA	1 cut(s)	301
PasI	CCCWGGG	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PctI	GAATGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	654
PflMI	CCANNNNNTGG	1 cut(s)	927
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	158, 454, 489, 678, 853
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	643, 758
PspPI	GGNCC	2 cut(s)	641, 756
RsaI	GTAC	2 cut(s)	464, 1056
RsaNI	GTAC	2 cut(s)	463, 1055
RseI	CAYNNNNRTG	2 cut(s)	194, 527
SaqAI	TTAA	3 cut(s)	222, 261, 668
SatI	GCNGC	5 cut(s)	157, 453, 488, 677, 852
Sau3AI	GATC	4 cut(s)	131, 244, 469, 973
Sau96I	GGNCC	2 cut(s)	641, 756
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	646
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	2 cut(s)	641, 756
SmiMI	CAYNNNNRTG	2 cut(s)	194, 527
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	9 cut(s)	24, 374, 386, 584, 665, 717, 787, 936, 1007
SsiI	CCGC	2 cut(s)	229, 998
SspMI	CTAG	3 cut(s)	497, 749, 1031
StyD4I	CCNGG	1 cut(s)	644
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	6 cut(s)	92, 145, 296, 620, 958, 1054
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	762, 1017, 1045
TasI	AATT	9 cut(s)	24, 374, 386, 584, 665, 717, 787, 936, 1007
TatI	WGTACW	2 cut(s)	462, 1054
Tru1I	TTAA	3 cut(s)	222, 261, 668
Tru9I	TTAA	3 cut(s)	222, 261, 668
TscAI	CASTG	6 cut(s)	101, 123, 534, 665, 814, 963
TseFI	GTSAC	3 cut(s)	43, 574, 958
TseI	GCWGC	5 cut(s)	156, 452, 487, 676, 851
Tsp45I	GTSAC	3 cut(s)	43, 574, 958
TspDTI	ATGAA	6 cut(s)	290, 318, 379, 466, 710, 773
TspGWI	ACGGA	3 cut(s)	548, 648, 686
TspRI	CASTG	6 cut(s)	101, 123, 534, 665, 814, 963
Van91I	CCANNNNNTGG	1 cut(s)	927
VpaK11BI	GGWCC	2 cut(s)	641, 756
XapI	RAATTY	3 cut(s)	386, 584, 1007
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	924
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	3 cut(s)	497, 749, 1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.