Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

56875556 .. 56877533

Gene Structure 1978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00376130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAATGGGTTTCATGATGTTGAGCTCAAAGTCCGCGATTACGAGCTTGATCAGTATGGTGTTGTCAACAATGCTGTCTTTGCAAGTTACTGCCAGCACGGTCGTCATCAACTTCTGGAAAGGGTTGGCGTGAGCGCTGATGCGGTTGCCCGTACTGGTGATGCACTAGCATTGTCAGAATTGTCTCTCAAATTCATTGCGCCTCTAAGAAGTGGAGACAAGTTTGTCATAAAGGTGAGGGTGGCCAACTCTTCAGGTGCTCGCTTGTATTTTGATCACTTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTGGAAGCAAAGGCCACTTCAGTGTGGCTTGATAAAAACTATCGCCCTATCCGTATTCCACCGGAGGTGAGATCTAAATTTGTTCAATTTCTTCCCCTTGAGGAGTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

141

Amino Acids

15.99

Weight (kDa)

7.88

Isoelectric Point (pI)

22.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	11 - 131	8.9e-17	Thioesterase-like superfamily
4HBT	PF03061	19 - 100	2e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	34, 143
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	191, 389
AcuI	CTGAAG	2 cut(s)	237, 315
AfaI	GTAC	1 cut(s)	154
AfeI	AGCGCT	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	289, 398
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	3 cut(s)	25, 46, 292
AluI	AGCT	3 cut(s)	25, 46, 292
Alw21I	GWGCWC	2 cut(s)	27, 262
Alw26I	GTCTC	2 cut(s)	189, 210
Aor51HI	AGCGCT	1 cut(s)	136
AoxI	GGCC	2 cut(s)	243, 324
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	2 cut(s)	191, 389
AspLEI	GCGC	2 cut(s)	137, 202
AsuHPI	GGTGA	3 cut(s)	170, 247, 391
BalI	TGGCCA	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	27, 262
BbvI	GCAGC	1 cut(s)	279
BclI	TGATCA	2 cut(s)	49, 274
BcoDI	GTCTC	2 cut(s)	189, 210
BfaI	CTAG	2 cut(s)	167, 302
BfoI	RGCGCY	1 cut(s)	138
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
BmsI	GCATC	2 cut(s)	130, 151
BsaWI	WCCGGW	1 cut(s)	373
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	36
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	245, 326
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	2 cut(s)	27, 262
BsiSI	CCGG	1 cut(s)	374
BsmAI	GTCTC	2 cut(s)	189, 210
BsnI	GGCC	2 cut(s)	245, 326
Bsp1286I	GDGCHC	2 cut(s)	27, 262
Bsp143I	GATC	3 cut(s)	49, 274, 383
BspACI	CCGC	2 cut(s)	34, 143
BspANI	GGCC	2 cut(s)	245, 326
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	160
BssMI	GATC	3 cut(s)	49, 274, 383
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	1 cut(s)	256
BstC8I	GCNNGC	2 cut(s)	95, 262
BstDEI	CTNAG	1 cut(s)	206
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	137, 202
BstKTI	GATC	3 cut(s)	52, 277, 386
BstMAI	GTCTC	2 cut(s)	189, 210
BstMBI	GATC	3 cut(s)	49, 274, 383
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	383
BstYI	RGATCY	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	245, 326
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	95, 262
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	2 cut(s)	137, 202
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	7 cut(s)	25, 46, 245, 292, 307, 326, 340
CviKI_1	RGCY	7 cut(s)	25, 46, 245, 292, 307, 326, 340
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	3 cut(s)	51, 276, 385
DpnII	GATC	3 cut(s)	49, 274, 383
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Ecl136II	GAGCTC	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	27
Eco47III	AGCGCT	1 cut(s)	136
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	237, 315
EcoICRI	GAGCTC	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	1 cut(s)	17
FaiI	YATR	3 cut(s)	15, 57, 230
FatI	CATG	1 cut(s)	13
FbaI	TGATCA	2 cut(s)	49, 274
Fnu4HI	GCNGC	1 cut(s)	293
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	2 cut(s)	167, 302
GlaI	GCGC	2 cut(s)	136, 201
GluI	GCNGC	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	245, 326
HapII	CCGG	1 cut(s)	374
HhaI	GCGC	2 cut(s)	137, 202
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	2 cut(s)	135, 200
HinP1I	GCGC	2 cut(s)	135, 200
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	1 cut(s)	416
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	3 cut(s)	170, 247, 391
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	3 cut(s)	14, 116, 302
Hpy8I	GTNNAC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4V	TGCA	2 cut(s)	83, 164
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	2 cut(s)	135, 200
Ksp22I	TGATCA	2 cut(s)	49, 274
Kzo9I	GATC	3 cut(s)	49, 274, 383
LpnPI	CCDG	5 cut(s)	101, 107, 141, 240, 387
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	2 cut(s)	130, 151
MaeI	CTAG	2 cut(s)	167, 302
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	51, 276, 385
MboI	GATC	3 cut(s)	49, 274, 383
MboII	GAAGA	2 cut(s)	243, 395
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	2 cut(s)	27, 262
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	4 cut(s)	179, 191, 389, 398
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	4 cut(s)	213, 231, 370, 406
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MslI	CAYNNNNRTG	2 cut(s)	233, 332
Msp20I	TGGCCA	1 cut(s)	245
MspI	CCGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	3 cut(s)	49, 274, 383
NlaIII	CATG	1 cut(s)	17
OliI	CACNNNNGTG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Psp124BI	GAGCTC	1 cut(s)	27
PsuI	RGATCY	1 cut(s)	383
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	2 cut(s)	233, 332
SacI	GAGCTC	1 cut(s)	27
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	3 cut(s)	49, 274, 383
SchI	GAGTC	1 cut(s)	425
SduI	GDGCHC	2 cut(s)	27, 262
SetI	ASST	6 cut(s)	27, 48, 237, 259, 294, 381
SfaNI	GCATC	2 cut(s)	130, 151
SmiMI	CAYNNNNRTG	2 cut(s)	233, 332
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	4 cut(s)	179, 191, 389, 398
SsiI	CCGC	2 cut(s)	34, 143
SspMI	CTAG	2 cut(s)	167, 302
SstI	GAGCTC	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	101
TasI	AATT	4 cut(s)	179, 191, 389, 398
TscAI	CASTG	1 cut(s)	339
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	17, 184, 271
TspGWI	ACGGA	1 cut(s)	353
TspRI	CASTG	1 cut(s)	339
XapI	RAATTY	2 cut(s)	191, 389
XbaI	TCTAGA	1 cut(s)	301
XspI	CTAG	2 cut(s)	167, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.