Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

48850128 .. 48851923

Gene Structure 1796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG291700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTTGAGGTTGCAGGCATATTCAATTGCCGACTACAATCACGTGACCTTTGCCTCCTCATGCGTCATTCCTACTTCACTCCATTCCCACCGTCAATCGGTATCTTTTCCAACCACACGGACACGTTTCCGATCACTCCCCACTGTCAGGATATGCAGCACTTCCGTTGCATGCGATAAGGGAGGTCGCTTAAGAAGGAGTGGTTTTTATGATGTTGAGCTTAAAGTCCGAGAATATGAGCTTGATCGGTATGGCGTGGTTAACAATGCTGTCTATGTAGATTATTGCCAGCACGCTTTTGATGAACATTTAGAAAGCGTCGGCCTGAGTGCTGATGCAATTGCCCAAACCGGTGAAGCAATGGCGTTATCAGCATCGTCTCTGAAATTCATTGCACCTCTAAAGAGTGGAGACAAGTTTGTCATAAAGTTGCGGATGACTAACTCCTCAGCCGCTCGCCTGTATCTTGAGCAATTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTCGAAGGAACGGCCACAGTTGTGTGGCTTAATAAAGACTATCGCCCTGTCCGTATTCCATCGGAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

192

Amino Acids

21.69

Weight (kDa)

8.88

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	76 - 191	4e-16	Thioesterase-like superfamily
4HBT	PF03061	84 - 165	3.6e-08	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	455
AciI	CCGC	2 cut(s)	433, 453
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	386
AcvI	CACGTG	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	97, 147
AflII	CTTAAG	1 cut(s)	190
AflIII	ACRYGT	1 cut(s)	122
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	2 cut(s)	24, 484
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	3 cut(s)	220, 241, 487
AluI	AGCT	3 cut(s)	220, 241, 487
Alw26I	GTCTC	2 cut(s)	384, 405
AoxI	GGCC	2 cut(s)	322, 519
ApeKI	GCWGC	2 cut(s)	156, 487
ApoI	RAATTY	1 cut(s)	386
AsiGI	ACCGGT	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	365
AsuII	TTCGAA	1 cut(s)	510
BbrPI	CACGTG	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	2 cut(s)	168, 474
BccI	CCATC	1 cut(s)	574
BceAI	ACGGC	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	384, 405
BfaI	CTAG	1 cut(s)	497
BfrI	CTTAAG	1 cut(s)	190
BisI	GCNGC	3 cut(s)	157, 453, 488
BlsI	GCNGC	3 cut(s)	158, 454, 489
BmsI	GCATC	2 cut(s)	325, 383
Bpu10I	CCTNAGC	1 cut(s)	448
Bpu14I	TTCGAA	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	43
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 147
Bse118I	RCCGGY	1 cut(s)	350
Bse3DI	GCAATG	2 cut(s)	366, 390
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	97, 147
BseMI	GCAATG	2 cut(s)	366, 390
BseMII	CTCAG	2 cut(s)	317, 462
BseRI	GAGGAG	2 cut(s)	46, 436
BseXI	GCAGC	2 cut(s)	168, 474
BshFI	GGCC	2 cut(s)	324, 521
BshTI	ACCGGT	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	97, 147
BsmAI	GTCTC	2 cut(s)	384, 405
BsmBI	CGTCTC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	324, 521
Bsp119I	TTCGAA	1 cut(s)	510
Bsp143I	GATC	2 cut(s)	131, 244
BspACI	CCGC	2 cut(s)	433, 453
BspANI	GGCC	2 cut(s)	324, 521
BspCNI	CTCAG	2 cut(s)	318, 461
BspT104I	TTCGAA	1 cut(s)	510
BspTI	CTTAAG	1 cut(s)	190
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	2 cut(s)	366, 390
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssMI	GATC	2 cut(s)	131, 244
Bst4CI	ACNGT	3 cut(s)	92, 145, 526
BstAFI	CTTAAG	1 cut(s)	190
BstBAI	YACGTR	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	510
BstC8I	GCNNGC	5 cut(s)	15, 172, 290, 294, 457
BstDEI	CTNAG	2 cut(s)	326, 448
BstF5I	GGATG	1 cut(s)	441
BstKTI	GATC	2 cut(s)	134, 247
BstMAI	GTCTC	2 cut(s)	384, 405
BstMBI	GATC	2 cut(s)	131, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNSI	RCATGY	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	168, 474
BsuRI	GGCC	2 cut(s)	324, 521
BtsCI	GGATG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	5 cut(s)	15, 172, 290, 294, 457
Cfr10I	RCCGGY	1 cut(s)	350
CseI	GACGC	2 cut(s)	52, 307
CspAI	ACCGGT	1 cut(s)	350
CviAII	CATG	2 cut(s)	60, 171
CviJI	RGCY	8 cut(s)	220, 241, 324, 452, 487, 502, 521, 535
CviKI_1	RGCY	8 cut(s)	220, 241, 324, 452, 487, 502, 521, 535
DdeI	CTNAG	2 cut(s)	326, 448
DpnI	GATC	2 cut(s)	133, 246
DpnII	GATC	2 cut(s)	131, 244
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	1 cut(s)	519
Eco72I	CACGTG	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	384
FaeI	CATG	2 cut(s)	63, 174
FaiI	YATR	9 cut(s)	19, 61, 154, 172, 210, 237, 252, 276, 425
FatI	CATG	2 cut(s)	59, 170
Fnu4HI	GCNGC	3 cut(s)	157, 453, 488
FokI	GGATG	1 cut(s)	448
Fsp4HI	GCNGC	3 cut(s)	157, 453, 488
FspBI	CTAG	1 cut(s)	497
GluI	GCNGC	3 cut(s)	157, 453, 488
HaeIII	GGCC	2 cut(s)	324, 521
HapII	CCGG	1 cut(s)	351
HgaI	GACGC	2 cut(s)	52, 307
Hin1II	CATG	2 cut(s)	63, 174
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	4 cut(s)	131, 230, 384, 571
Hpy188III	TCNNGA	3 cut(s)	148, 467, 497
Hpy8I	GTNNAC	1 cut(s)	262
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	2 cut(s)	189, 506
HpyCH4III	ACNGT	3 cut(s)	92, 145, 526
HpyCH4IV	ACGT	2 cut(s)	42, 124
HpyCH4V	TGCA	5 cut(s)	13, 156, 170, 338, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	2 cut(s)	326, 448
HpySE526I	ACGT	2 cut(s)	42, 124
Hsp92II	CATG	2 cut(s)	63, 174
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	2 cut(s)	131, 244
LpnPI	CCDG	6 cut(s)	133, 302, 338, 364, 473, 567
Lsp1109I	GCAGC	2 cut(s)	168, 474
LweI	GCATC	2 cut(s)	325, 383
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	2 cut(s)	42, 124
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	2 cut(s)	133, 246
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	2 cut(s)	131, 244
MboII	GAAGA	1 cut(s)	499
MfeI	CAATTG	2 cut(s)	24, 339
MluCI	AATT	4 cut(s)	24, 339, 386, 473
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	64, 67, 176, 408, 457
MseI	TTAA	5 cut(s)	191, 222, 261, 537, 577
MslI	CAYNNNNRTG	1 cut(s)	527
MspCI	CTTAAG	1 cut(s)	190
MspI	CCGG	1 cut(s)	351
MunI	CAATTG	2 cut(s)	24, 339
MwoI	GCNNNNNNNGC	1 cut(s)	371
NdeII	GATC	2 cut(s)	131, 244
NlaIII	CATG	2 cut(s)	63, 174
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	174
NspV	TTCGAA	1 cut(s)	510
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	3 cut(s)	158, 454, 489
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	43
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	5 cut(s)	191, 222, 261, 537, 577
SatI	GCNGC	3 cut(s)	157, 453, 488
Sau3AI	GATC	2 cut(s)	131, 244
SetI	ASST	9 cut(s)	11, 45, 50, 127, 187, 222, 243, 400, 489
SfaNI	GCATC	2 cut(s)	325, 383
SfuI	TTCGAA	1 cut(s)	510
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	190, 467
SmoI	CTYRAG	2 cut(s)	190, 467
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	4 cut(s)	24, 339, 386, 473
SsiI	CCGC	2 cut(s)	433, 453
SspMI	CTAG	1 cut(s)	497
TaaI	ACNGT	3 cut(s)	92, 145, 526
TaiI	ACGT	2 cut(s)	45, 127
TaqI	TCGA	1 cut(s)	510
TasI	AATT	4 cut(s)	24, 339, 386, 473
TauI	GCSGC	1 cut(s)	455
Tru1I	TTAA	5 cut(s)	191, 222, 261, 537, 577
Tru9I	TTAA	5 cut(s)	191, 222, 261, 537, 577
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	156, 487
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	318, 379, 466
TspGWI	ACGGA	3 cut(s)	133, 154, 548
TspRI	CASTG	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	190
XapI	RAATTY	1 cut(s)	386
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	174
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.