Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00916

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

9582 .. 12453

Gene Structure 2872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTTGAGGTTGCAGGCATTTTCAATTGCCGATCACGTGACCTTTCCCTCCTCATGCGTCATTCCTACTTCACTCCATTCCCACCGTCGATCGGTATCTTTTCCAACCACACGGACAGGTTTCCGATCACCCCCCACTCTCAGGATAGGTAGCCCTTCCATTGCATGCGATAAGGGTGGTCGCTTAAGAATGAGTGGTTTTTATGATGTTGAGCTTAAAGTACGACACTATGAGCTTGATCAGTATAGCGTAGTTAACAATGCTGTCTATGCAAATTATTGCCAGCACGCTCTTAAGGAACTTTTTGAAAGGGTTGGCCTAAATCCCGACGCAGTTGCCCAAACCGGTGAAGCATTTGCGTTGTCAACATCGTCTATGAAATTCATTGCACCTCTAAAGATTGGAGACGAGTTTGTCATAAAGGTCAGGATGACTAATTCCTCAGCCACTCGCCTGTACTTTGAGCTCTTCATTTTCAAGCTGCCGAATCTGGAGCCAATCTTGGAAGCAACAGCCACAGTAGTGTGGCTTGATCAGGACTATCGCCCTGTCCATATTCCATCGGAGGTGATATCTAAATTTGTCCAGTTTCGTCGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

200

Amino Acids

22.69

Weight (kDa)

9.22

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	74 - 193	8.2e-15	Thioesterase-like superfamily
4HBT	PF03061	83 - 163	1.7e-09	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AcsI	RAATTY	2 cut(s)	380, 578
AcvI	CACGTG	1 cut(s)	37
AfaI	GTAC	2 cut(s)	222, 458
AfiI	CCNNNNNNNGG	2 cut(s)	91, 141
AflII	CTTAAG	2 cut(s)	184, 293
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	3 cut(s)	24, 308, 478
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	4 cut(s)	214, 235, 466, 481
AluI	AGCT	4 cut(s)	214, 235, 466, 481
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	399
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	481
ApoI	RAATTY	2 cut(s)	380, 578
AsiGI	ACCGGT	1 cut(s)	344
AsuHPI	GGTGA	3 cut(s)	120, 359, 580
BanII	GRGCYC	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	468
BbvCI	CCTCAGC	1 cut(s)	442
BbvI	GCAGC	1 cut(s)	468
BccI	CCATC	1 cut(s)	568
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BclI	TGATCA	2 cut(s)	238, 532
BcoDI	GTCTC	1 cut(s)	399
BfrI	CTTAAG	2 cut(s)	184, 293
BisI	GCNGC	1 cut(s)	482
BlsI	GCNGC	1 cut(s)	483
BmiI	GGNNCC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	442
BsaAI	YACGTR	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 141
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	586
Bse3DI	GCAATG	2 cut(s)	159, 384
Bse8I	GATNNNNATC	1 cut(s)	94
BseGI	GGATG	1 cut(s)	435
BseJI	GATNNNNATC	1 cut(s)	94
BseLI	CCNNNNNNNGG	2 cut(s)	91, 141
BseMI	GCAATG	2 cut(s)	159, 384
BseMII	CTCAG	2 cut(s)	154, 456
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	318
BshTI	ACCGGT	1 cut(s)	344
BsiEI	CGRYCG	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	345
BslI	CCNNNNNNNGG	2 cut(s)	91, 141
BsmAI	GTCTC	1 cut(s)	399
BsmBI	CGTCTC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	5 cut(s)	31, 89, 125, 238, 532
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	153, 455
BspLI	GGNNCC	1 cut(s)	495
BspQI	GCTCTTC	1 cut(s)	473
BspTI	CTTAAG	2 cut(s)	184, 293
BsrDI	GCAATG	2 cut(s)	159, 384
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	344
BssMI	GATC	5 cut(s)	31, 89, 125, 238, 532
Bst4CI	ACNGT	2 cut(s)	86, 520
Bst6I	CTCTTC	1 cut(s)	473
BstAFI	CTTAAG	2 cut(s)	184, 293
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	4 cut(s)	15, 166, 284, 288
BstDEI	CTNAG	2 cut(s)	140, 442
BstF5I	GGATG	1 cut(s)	435
BstKTI	GATC	5 cut(s)	34, 92, 128, 241, 535
BstMAI	GTCTC	1 cut(s)	399
BstMBI	GATC	5 cut(s)	31, 89, 125, 238, 532
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	435
Cac8I	GCNNGC	4 cut(s)	15, 166, 284, 288
Cfr10I	RCCGGY	1 cut(s)	344
CseI	GACGC	2 cut(s)	46, 338
Csp6I	GTAC	2 cut(s)	221, 457
CspAI	ACCGGT	1 cut(s)	344
CviAII	CATG	2 cut(s)	54, 165
CviQI	GTAC	2 cut(s)	221, 457
DdeI	CTNAG	2 cut(s)	140, 442
DpnI	GATC	5 cut(s)	33, 91, 127, 240, 534
DpnII	GATC	5 cut(s)	31, 89, 125, 238, 532
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
Eam1104I	CTCTTC	1 cut(s)	473
EarI	CTCTTC	1 cut(s)	473
Ecl136II	GAGCTC	1 cut(s)	466
Eco24I	GRGCYC	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	573
Eco53kI	GAGCTC	1 cut(s)	466
Eco72I	CACGTG	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	468
Esp3I	CGTCTC	1 cut(s)	399
FaeI	CATG	2 cut(s)	57, 168
FaiI	YATR	9 cut(s)	55, 166, 204, 231, 246, 270, 377, 419, 555
FatI	CATG	2 cut(s)	53, 164
FbaI	TGATCA	2 cut(s)	238, 532
Fnu4HI	GCNGC	1 cut(s)	482
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	482
GluI	GCNGC	1 cut(s)	482
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	345
HgaI	GACGC	2 cut(s)	46, 338
Hin1II	CATG	2 cut(s)	57, 168
HincII	GTYRAC	2 cut(s)	256, 366
HindII	GTYRAC	2 cut(s)	256, 366
HinfI	GANTC	1 cut(s)	487
HpaI	GTTAAC	1 cut(s)	256
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	3 cut(s)	120, 359, 580
Hpy166II	GTNNAC	2 cut(s)	256, 366
Hpy188I	TCNGA	2 cut(s)	125, 565
Hpy188III	TCNNGA	5 cut(s)	142, 326, 427, 491, 536
Hpy8I	GTNNAC	2 cut(s)	256, 366
Hpy99I	CGWCG	3 cut(s)	90, 332, 597
HpyAV	CCTTC	1 cut(s)	165
HpyCH4III	ACNGT	2 cut(s)	86, 520
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	4 cut(s)	13, 164, 272, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	2 cut(s)	140, 442
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	57, 168
Ksp22I	TGATCA	2 cut(s)	238, 532
KspAI	GTTAAC	1 cut(s)	256
Kzo9I	GATC	5 cut(s)	31, 89, 125, 238, 532
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	1 cut(s)	468
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	5 cut(s)	33, 91, 127, 240, 534
MboI	GATC	5 cut(s)	31, 89, 125, 238, 532
MboII	GAAGA	1 cut(s)	460
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	468
MluCI	AATT	5 cut(s)	24, 274, 380, 436, 578
MmeI	TCCRAC	1 cut(s)	128
MnlI	CCTC	5 cut(s)	58, 61, 402, 451, 559
MseI	TTAA	4 cut(s)	185, 216, 255, 294
MslI	CAYNNNNRTG	1 cut(s)	521
MspCI	CTTAAG	2 cut(s)	184, 293
MspI	CCGG	1 cut(s)	345
MunI	CAATTG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	5 cut(s)	31, 89, 125, 238, 532
NlaIII	CATG	2 cut(s)	57, 168
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	37
NspI	RCATGY	1 cut(s)	168
OliI	CACNNNNGTG	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	487
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	483
Ple19I	CGATCG	1 cut(s)	92
PmaCI	CACGTG	1 cut(s)	37
PmlI	CACGTG	1 cut(s)	37
Ppu21I	YACGTR	1 cut(s)	37
Psp124BI	GAGCTC	1 cut(s)	468
PspCI	CACGTG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	495
PvuI	CGATCG	1 cut(s)	92
RsaI	GTAC	2 cut(s)	222, 458
RsaNI	GTAC	2 cut(s)	221, 457
RseI	CAYNNNNRTG	1 cut(s)	521
SacI	GAGCTC	1 cut(s)	468
SapI	GCTCTTC	1 cut(s)	473
SaqAI	TTAA	4 cut(s)	185, 216, 255, 294
SatI	GCNGC	1 cut(s)	482
Sau3AI	GATC	5 cut(s)	31, 89, 125, 238, 532
SduI	GDGCHC	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	184, 293
SmoI	CTYRAG	2 cut(s)	184, 293
SphI	GCATGC	1 cut(s)	168
Sse9I	AATT	5 cut(s)	24, 274, 380, 436, 578
SstI	GAGCTC	1 cut(s)	468
TaaI	ACNGT	2 cut(s)	86, 520
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	88
TasI	AATT	5 cut(s)	24, 274, 380, 436, 578
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	4 cut(s)	185, 216, 255, 294
Tru9I	TTAA	4 cut(s)	185, 216, 255, 294
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	3 cut(s)	373, 392, 460
TspGWI	ACGGA	1 cut(s)	127
Vha464I	CTTAAG	2 cut(s)	184, 293
XapI	RAATTY	2 cut(s)	380, 578
XceI	RCATGY	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.