Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023421.1

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

8759 .. 11487

Gene Structure 2729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023421.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

atgttgaggttgcaggcattttcaattcccgactacaatcatgtgacctttccctcctcacacgtcattccttcttcactccatctccaccgtcagtgggtatcttttcccaccacactggcgcgtttccgatcactccctaccgtcaggatatgcagcacttcccttgcatgtgatttcggaggtggcataggaatgagtggtttttatgatgttgagcttaaagtccgcgactatgagcttgatcagtatggcgtcgttaacaatgctgtctatgcaagttattgccagcacggtcttcatgaacttcttgaaggggttggcatgagtgctgatgcagttgcccgaaccggtgaagcattcgctttatcagaattgtctctgaaattcattgcacctctaaaggtcgggatgacgcactcctcagcagctcgcgtgtactttgatcagttcattttcaagctgccaaatctagagcctatcttggaagcaaaggccacagcagtgtggcttgataaaggctatcgcccagtccgtattccatcggaggtgacatctaaatttgtccagtttcgtcgccataaggagtctaacggtgtcctgcacaacggagttggtcccagggaaagtcttcagtgggaattaacggagcagcagggagaggagaagatgaagaagaaggtgatggtggcaattgatgagagcgagcttagccactacgcgctagaatggaccctcgaaaatcttggcaacaccattcataattctgagctactcgtcttcacttcacagcccaccaccattgattttgctcctgagctggtagcagctatacaagaaaactacaagaaggtggcattggttttgctggataaagctaagacatctgcgccaaccatggggtggattacaatttctattgttgcagagacagtaacagaggttggtgatcctaaaaaggcaatatgtgaagcggtagaaaaattcaacatcgagttactaatactaggcagtcatggtcgaggaactgtacaaaggtatttcttaagttttggggatattctagtgtttcggaatattgaaatttcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

363

Amino Acids

40.56

Weight (kDa)

6.08

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	903
AccII	CGCG	4 cut(s)	124, 231, 435, 722
AciI	CCGC	2 cut(s)	229, 974
AclWI	GGATC	1 cut(s)	944
AcsI	RAATTY	4 cut(s)	386, 560, 983, 1083
AcuI	CTGAAG	1 cut(s)	617
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	440, 1032
AfiI	CCNNNNNNNGG	3 cut(s)	97, 899, 903
AflII	CTTAAG	1 cut(s)	1045
AflIII	ACRYGT	1 cut(s)	61
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	5 cut(s)	24, 314, 460, 988, 1082
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	620
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AleI	CACNNNNGTG	1 cut(s)	503
AluBI	AGCT	9 cut(s)	220, 241, 431, 463, 709, 772, 820, 830, 878
AluI	AGCT	9 cut(s)	220, 241, 431, 463, 709, 772, 820, 830, 878
Alw26I	GTCTC	2 cut(s)	384, 923
AlwI	GGATC	1 cut(s)	944
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	5 cut(s)	156, 428, 463, 652, 827
ApoI	RAATTY	4 cut(s)	386, 560, 983, 1083
AsiGI	ACCGGT	1 cut(s)	350
Asp700I	GAANNNNTTC	1 cut(s)	630
AspLEI	GCGC	3 cut(s)	124, 724, 892
AspS9I	GGNCC	2 cut(s)	617, 732
AsuHPI	GGTGA	4 cut(s)	365, 562, 694, 959
AvaII	GGWCC	2 cut(s)	617, 732
BbsI	GAAGAC	3 cut(s)	290, 623, 772
BbvCI	CCTCAGC	1 cut(s)	424
BbvI	GCAGC	5 cut(s)	168, 440, 450, 664, 839
BccI	CCATC	3 cut(s)	90, 550, 679
BciT130I	CCWGG	1 cut(s)	622
BclI	TGATCA	2 cut(s)	244, 445
BcoDI	GTCTC	2 cut(s)	384, 923
BfaI	CTAG	4 cut(s)	473, 725, 1007, 1064
BfrI	CTTAAG	1 cut(s)	1045
BisI	GCNGC	5 cut(s)	157, 429, 464, 653, 828
BlpI	GCTNAGC	1 cut(s)	710
BlsI	GCNGC	5 cut(s)	158, 430, 465, 654, 829
Bme1390I	CCNGG	1 cut(s)	622
Bme18I	GGWCC	2 cut(s)	617, 732
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	617, 732
BmiI	GGNNCC	2 cut(s)	619, 734
BmrFI	CCNGG	1 cut(s)	622
BmrI	ACTGGG	1 cut(s)	524
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	1 cut(s)	524
BpiI	GAAGAC	3 cut(s)	290, 623, 772
Bpu10I	CCTNAGC	2 cut(s)	424, 816
Bpu1102I	GCTNAGC	1 cut(s)	710
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	620, 621, 897
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 899, 903
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	3 cut(s)	123, 530, 568
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	3 cut(s)	620, 621, 897
BseGI	GGATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	3 cut(s)	97, 899, 903
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	3 cut(s)	438, 759, 807
BseNI	ACTGG	3 cut(s)	123, 530, 568
BseRI	GAGGAG	3 cut(s)	46, 412, 677
BseXI	GCAGC	5 cut(s)	168, 440, 450, 664, 839
BsgI	GTGCAG	1 cut(s)	587
Bsh1236I	CGCG	4 cut(s)	124, 231, 435, 722
BshFI	GGCC	1 cut(s)	497
BshTI	ACCGGT	1 cut(s)	350
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	603
BslI	CCNNNNNNNGG	3 cut(s)	97, 899, 903
BsmAI	GTCTC	2 cut(s)	384, 923
BsmFI	GGGAC	1 cut(s)	603
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	1 cut(s)	497
Bsp1407I	TGTACA	1 cut(s)	1030
Bsp143I	GATC	4 cut(s)	131, 244, 445, 949
Bsp1720I	GCTNAGC	1 cut(s)	710
Bsp19I	CCATGG	1 cut(s)	897
BspACI	CCGC	2 cut(s)	229, 974
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	3 cut(s)	437, 760, 808
BspFNI	CGCG	4 cut(s)	124, 231, 435, 722
BspHI	TCATGA	1 cut(s)	301
BspLI	GGNNCC	2 cut(s)	619, 734
BspPI	GGATC	1 cut(s)	944
BspTI	CTTAAG	1 cut(s)	1045
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	350
BsrGI	TGTACA	1 cut(s)	1030
BsrI	ACTGG	3 cut(s)	123, 530, 568
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	3 cut(s)	620, 621, 897
BssMI	GATC	4 cut(s)	131, 244, 445, 949
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	897
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	6 cut(s)	92, 145, 296, 596, 934, 1030
BstACI	GRCGYC	1 cut(s)	255
BstAFI	CTTAAG	1 cut(s)	1045
BstAUI	TGTACA	1 cut(s)	1030
BstC8I	GCNNGC	4 cut(s)	15, 290, 433, 707
BstDEI	CTNAG	5 cut(s)	424, 710, 768, 816, 879
BstDSI	CCRYGG	1 cut(s)	897
BstF5I	GGATG	1 cut(s)	417
BstFNI	CGCG	4 cut(s)	124, 231, 435, 722
BstHHI	GCGC	3 cut(s)	124, 724, 892
BstKTI	GATC	4 cut(s)	134, 247, 448, 952
BstMAI	GTCTC	2 cut(s)	384, 923
BstMBI	GATC	4 cut(s)	131, 244, 445, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 711
BstNI	CCWGG	1 cut(s)	622
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	620
BstUI	CGCG	4 cut(s)	124, 231, 435, 722
BstV1I	GCAGC	5 cut(s)	168, 440, 450, 664, 839
BstV2I	GAAGAC	3 cut(s)	290, 623, 772
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	497
BtgI	CCRYGG	1 cut(s)	897
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	417
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	4 cut(s)	101, 116, 510, 641
Cac8I	GCNNGC	4 cut(s)	15, 290, 433, 707
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	3 cut(s)	124, 724, 892
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	617, 732
CseI	GACGC	2 cut(s)	244, 424
Csp6I	GTAC	2 cut(s)	439, 1031
CspAI	ACCGGT	1 cut(s)	350
CspCI	CAANNNNNGTGG	2 cut(s)	784, 819
CviAII	CATG	6 cut(s)	41, 171, 302, 325, 898, 1016
CviQI	GTAC	2 cut(s)	439, 1031
DdeI	CTNAG	5 cut(s)	424, 710, 768, 816, 879
DpnI	GATC	4 cut(s)	133, 246, 447, 951
DpnII	GATC	4 cut(s)	131, 244, 445, 949
Eco130I	CCWWGG	1 cut(s)	897
Eco47I	GGWCC	2 cut(s)	617, 732
Eco57I	CTGAAG	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	620
EcoT14I	CCWWGG	1 cut(s)	897
ErhI	CCWWGG	1 cut(s)	897
FaeI	CATG	6 cut(s)	44, 174, 305, 328, 901, 1019
FaqI	GGGAC	1 cut(s)	603
FatI	CATG	6 cut(s)	40, 170, 301, 324, 897, 1015
FbaI	TGATCA	2 cut(s)	244, 445
Fnu4HI	GCNGC	5 cut(s)	157, 429, 464, 653, 828
FokI	GGATG	1 cut(s)	424
Fsp4HI	GCNGC	5 cut(s)	157, 429, 464, 653, 828
FspBI	CTAG	4 cut(s)	473, 725, 1007, 1064
GlaI	GCGC	3 cut(s)	123, 723, 891
GluI	GCNGC	5 cut(s)	157, 429, 464, 653, 828
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	351
HgaI	GACGC	2 cut(s)	244, 424
HhaI	GCGC	3 cut(s)	124, 724, 892
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	6 cut(s)	44, 174, 305, 328, 901, 1019
Hin6I	GCGC	3 cut(s)	122, 722, 890
HinP1I	GCGC	3 cut(s)	122, 722, 890
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	587
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	4 cut(s)	365, 562, 694, 959
Hpy166II	GTNNAC	2 cut(s)	262, 439
Hpy188I	TCNGA	7 cut(s)	131, 182, 373, 384, 547, 769, 1074
Hpy188III	TCNNGA	7 cut(s)	29, 148, 302, 311, 409, 473, 815
Hpy8I	GTNNAC	2 cut(s)	262, 439
Hpy99I	CGWCG	2 cut(s)	260, 579
HpyAV	CCTTC	4 cut(s)	81, 308, 673, 844
HpyCH4III	ACNGT	6 cut(s)	92, 145, 296, 596, 934, 1030
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	8 cut(s)	13, 156, 170, 278, 338, 395, 604, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 711
HpyF3I	CTNAG	5 cut(s)	424, 710, 768, 816, 879
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	6 cut(s)	44, 174, 305, 328, 901, 1019
HspAI	GCGC	3 cut(s)	122, 722, 890
Ksp22I	TGATCA	2 cut(s)	244, 445
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	131, 244, 445, 949
LmnI	GCTCC	2 cut(s)	649, 817
Lsp1109I	GCAGC	5 cut(s)	168, 440, 450, 664, 839
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	4 cut(s)	473, 725, 1007, 1064
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	4 cut(s)	43, 550, 934, 996
MalI	GATC	4 cut(s)	133, 246, 447, 951
MboI	GATC	4 cut(s)	131, 244, 445, 949
MboII	GAAGA	7 cut(s)	66, 290, 623, 679, 685, 688, 772
MfeI	CAATTG	1 cut(s)	693
MlyI	GAGTC	1 cut(s)	596
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	4 cut(s)	222, 261, 644, 1046
MslI	CAYNNNNRTG	2 cut(s)	194, 503
MspCI	CTTAAG	1 cut(s)	1045
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	622
MunI	CAATTG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	622
MvnI	CGCG	4 cut(s)	124, 231, 435, 722
MwoI	GCNNNNNNNGC	2 cut(s)	275, 711
NcoI	CCATGG	1 cut(s)	897
NdeII	GATC	4 cut(s)	131, 244, 445, 949
NlaIII	CATG	6 cut(s)	44, 174, 305, 328, 901, 1019
NlaIV	GGNNCC	2 cut(s)	619, 734
NmuCI	GTSAC	2 cut(s)	43, 550
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	503
PagI	TCATGA	1 cut(s)	301
PasI	CCCWGGG	1 cut(s)	621
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PctI	GAATGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	630
PflMI	CCANNNNNTGG	1 cut(s)	903
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	158, 430, 465, 654, 829
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	2 cut(s)	619, 734
PspPI	GGNCC	2 cut(s)	617, 732
RsaI	GTAC	2 cut(s)	440, 1032
RsaNI	GTAC	2 cut(s)	439, 1031
RseI	CAYNNNNRTG	2 cut(s)	194, 503
SaqAI	TTAA	4 cut(s)	222, 261, 644, 1046
SatI	GCNGC	5 cut(s)	157, 429, 464, 653, 828
Sau3AI	GATC	4 cut(s)	131, 244, 445, 949
Sau96I	GGNCC	2 cut(s)	617, 732
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	622
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	2 cut(s)	617, 732
SmiMI	CAYNNNNRTG	2 cut(s)	194, 503
SmlI	CTYRAG	1 cut(s)	1045
SmoI	CTYRAG	1 cut(s)	1045
SsiI	CCGC	2 cut(s)	229, 974
SspI	AATATT	1 cut(s)	1078
SspMI	CTAG	4 cut(s)	473, 725, 1007, 1064
StyD4I	CCNGG	1 cut(s)	620
StyI	CCWWGG	1 cut(s)	897
TaaI	ACNGT	6 cut(s)	92, 145, 296, 596, 934, 1030
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	738, 993, 1021
TatI	WGTACW	2 cut(s)	438, 1030
Tru1I	TTAA	4 cut(s)	222, 261, 644, 1046
Tru9I	TTAA	4 cut(s)	222, 261, 644, 1046
TscAI	CASTG	4 cut(s)	101, 123, 510, 641
TseFI	GTSAC	2 cut(s)	43, 550
TseI	GCWGC	5 cut(s)	156, 428, 463, 652, 827
Tsp45I	GTSAC	2 cut(s)	43, 550
TspDTI	ATGAA	7 cut(s)	290, 318, 379, 442, 686, 749, 1077
TspGWI	ACGGA	3 cut(s)	524, 624, 662
TspRI	CASTG	4 cut(s)	101, 123, 510, 641
Van91I	CCANNNNNTGG	1 cut(s)	903
Vha464I	CTTAAG	1 cut(s)	1045
VpaK11BI	GGWCC	2 cut(s)	617, 732
XapI	RAATTY	4 cut(s)	386, 560, 983, 1083
XbaI	TCTAGA	1 cut(s)	472
XceI	RCATGY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	900
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	4 cut(s)	473, 725, 1007, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.