Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

30333168 .. 30335190

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G313100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCTGTTGCAGTTGCAGAGCCTGCGGGCATTTTCAGTTGCCGACCGCACTCACGTGACCCTCCCATCCTCACGTGTCATCCGTACGTCGCTCCATCTCCACCGTCCGTCAATTTCTTGTCCGACGACCCGGCCACGTCTCCGATCACTCCCCACCGTTAGGAGCTGTACCGCCCTCGCATTCGATTTCAAAGGTGGAAAAGGAATGAGTGAGTTTCTTGATGTTGAACTTAAAGTCCGCGATTATGAACTTGATCAATATGGCGTCGTTAACAATGCTGTTTATGCAAGTTACTGCCAGCATGGTCGTCATGAACTTCTGGAAAGGGTTGGCATCAGTGCTGATGCAGTTGCCCGCACTGGTGACGCATTAGCATTGTCAGAATTGTCACTCAAATTCCTTGCGCCACTCCGAAGTGGAGACAAGTTTGTAATAAAGGTCAGGCTCTCTGGTTCCTCAGCCGCCCGCTTGTACTTTGATCACTTTATTTTCAAGCTGCCAAATCAAGAGCCTATCTTGGAAGCAAAGGCCACAGCAGTTTGGCTTGACAAAAGCTATCGCCCTGTCCGTATTCCACCGGAGGTGAAATCTAAATTTGTTCAATTTCTTCGTCACGAGGAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

209

Amino Acids

23.45

Weight (kDa)

9.67

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	240
AciI	CCGC	7 cut(s)	25, 46, 171, 238, 355, 462, 466
AcoI	YGGCCR	1 cut(s)	131
AcsI	RAATTY	2 cut(s)	395, 593
AcvI	CACGTG	2 cut(s)	55, 74
AcyI	GRCGYC	1 cut(s)	264
AfaI	GTAC	3 cut(s)	85, 169, 473
AfiI	CCNNNNNNNGG	1 cut(s)	159
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	4 cut(s)	190, 227, 493, 602
AjiI	CACGTC	1 cut(s)	137
AleI	CACNNNNGTG	1 cut(s)	53
AloI	GAACNNNNNNTCC	2 cut(s)	219, 251
AluBI	AGCT	3 cut(s)	165, 496, 555
AluI	AGCT	3 cut(s)	165, 496, 555
Alw26I	GTCTC	2 cut(s)	143, 414
AlwNI	CAGNNNCTG	1 cut(s)	22
AoxI	GGCC	2 cut(s)	131, 528
ApeKI	GCWGC	1 cut(s)	496
ApoI	RAATTY	2 cut(s)	395, 593
AspLEI	GCGC	1 cut(s)	406
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	374, 595
BauI	CACGAG	1 cut(s)	614
BbrPI	CACGTG	2 cut(s)	55, 74
BbvCI	CCTCAGC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	483
BccI	CCATC	2 cut(s)	73, 102
BclI	TGATCA	2 cut(s)	253, 478
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	143, 414
BisI	GCNGC	2 cut(s)	462, 497
BlsI	GCNGC	2 cut(s)	463, 498
Bme1390I	CCNGG	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	334, 342
Bpu10I	CCTNAGC	1 cut(s)	457
BpuMI	CCSGG	1 cut(s)	130
BsaAI	YACGTR	2 cut(s)	55, 74
BsaHI	GRCGYC	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	1 cut(s)	364
BseGI	GGATG	2 cut(s)	65, 78
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	364
BseXI	GCAGC	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	133, 530
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	130, 578
BsiWI	CGTACG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	2 cut(s)	143, 414
BsmBI	CGTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	133, 530
Bsp143I	GATC	3 cut(s)	143, 253, 478
BspACI	CCGC	7 cut(s)	25, 46, 171, 238, 355, 462, 466
BspANI	GGCC	2 cut(s)	133, 530
BspCNI	CTCAG	1 cut(s)	470
BspFNI	CGCG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	364
BssMI	GATC	3 cut(s)	143, 253, 478
BssNI	GRCGYC	1 cut(s)	264
BssSI	CACGAG	1 cut(s)	614
Bst2BI	CACGAG	1 cut(s)	614
Bst4CI	ACNGT	2 cut(s)	104, 157
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstBAI	YACGTR	2 cut(s)	55, 74
BstC8I	GCNNGC	5 cut(s)	23, 27, 299, 355, 466
BstDEI	CTNAG	1 cut(s)	457
BstF5I	GGATG	2 cut(s)	65, 78
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	406
BstKTI	GATC	3 cut(s)	146, 256, 481
BstMAI	GTCTC	2 cut(s)	143, 414
BstMBI	GATC	3 cut(s)	143, 253, 478
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 284
BstSCI	CCNGG	1 cut(s)	128
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	483
BsuRI	GGCC	2 cut(s)	133, 530
BtrI	CACGTC	1 cut(s)	137
BtsCI	GGATG	2 cut(s)	65, 78
BtsIMutI	CAGTG	2 cut(s)	343, 357
Cac8I	GCNNGC	5 cut(s)	23, 27, 299, 355, 466
CaiI	CAGNNNCTG	1 cut(s)	22
CciI	TCATGA	1 cut(s)	310
CfoI	GCGC	1 cut(s)	406
CseI	GACGC	2 cut(s)	253, 374
Csp6I	GTAC	3 cut(s)	84, 168, 472
CviAII	CATG	2 cut(s)	302, 311
CviQI	GTAC	3 cut(s)	84, 168, 472
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	3 cut(s)	145, 255, 480
DpnII	GATC	3 cut(s)	143, 253, 478
EaeI	YGGCCR	1 cut(s)	131
Eco72I	CACGTG	2 cut(s)	55, 74
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	2 cut(s)	305, 314
FaiI	YATR	5 cut(s)	246, 261, 285, 303, 312
FatI	CATG	2 cut(s)	301, 310
FauI	CCCGC	3 cut(s)	18, 362, 473
FbaI	TGATCA	2 cut(s)	253, 478
Fnu4HI	GCNGC	2 cut(s)	462, 497
FokI	GGATG	2 cut(s)	52, 65
Fsp4HI	GCNGC	2 cut(s)	462, 497
GlaI	GCGC	1 cut(s)	405
GluI	GCNGC	2 cut(s)	462, 497
HaeIII	GGCC	2 cut(s)	133, 530
HapII	CCGG	2 cut(s)	130, 578
HgaI	GACGC	2 cut(s)	253, 374
HhaI	GCGC	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	2 cut(s)	305, 314
Hin6I	GCGC	1 cut(s)	404
HinP1I	GCGC	1 cut(s)	404
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	620
HpaI	GTTAAC	1 cut(s)	271
HpaII	CCGG	2 cut(s)	130, 578
HphI	GGTGA	2 cut(s)	374, 595
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	4 cut(s)	123, 143, 382, 413
Hpy188III	TCNNGA	5 cut(s)	218, 311, 320, 506, 614
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	3 cut(s)	91, 127, 269
HpyCH4III	ACNGT	2 cut(s)	104, 157
HpyCH4IV	ACGT	4 cut(s)	54, 73, 86, 136
HpyCH4V	TGCA	4 cut(s)	10, 16, 287, 347
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 284
HpyF3I	CTNAG	1 cut(s)	457
HpySE526I	ACGT	4 cut(s)	54, 73, 86, 136
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	305, 314
HspAI	GCGC	1 cut(s)	404
Ksp22I	TGATCA	2 cut(s)	253, 478
KspAI	GTTAAC	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	143, 253, 478
LmnI	GCTCC	2 cut(s)	96, 162
LpnPI	CCDG	9 cut(s)	35, 143, 305, 311, 345, 427, 435, 576, 591
Lsp1109I	GCAGC	1 cut(s)	483
LweI	GCATC	2 cut(s)	334, 342
MaeII	ACGT	4 cut(s)	54, 73, 86, 136
MaeIII	GTNAC	5 cut(s)	55, 290, 362, 387, 611
MalI	GATC	3 cut(s)	145, 255, 480
MboI	GATC	3 cut(s)	143, 253, 478
MboII	GAAGA	1 cut(s)	599
MluCI	AATT	5 cut(s)	111, 383, 395, 593, 602
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	71, 79, 185, 466, 574, 610
MseI	TTAA	3 cut(s)	231, 270, 625
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	2 cut(s)	130, 578
MspR9I	CCNGG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	179
MvnI	CGCG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	22, 284
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	3 cut(s)	143, 253, 478
NlaIII	CATG	2 cut(s)	305, 314
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	4 cut(s)	55, 362, 387, 611
OliI	CACNNNNGTG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	2 cut(s)	79, 565
PctI	GAATGC	1 cut(s)	179
Pfl23II	CGTACG	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	463, 498
PmaCI	CACGTG	2 cut(s)	55, 74
PmlI	CACGTG	2 cut(s)	55, 74
Ppu21I	YACGTR	2 cut(s)	55, 74
PspCI	CACGTG	2 cut(s)	55, 74
PspLI	CGTACG	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	22
RsaI	GTAC	3 cut(s)	85, 169, 473
RsaNI	GTAC	3 cut(s)	84, 168, 472
RseI	CAYNNNNRTG	1 cut(s)	53
SaqAI	TTAA	3 cut(s)	231, 270, 625
SatI	GCNGC	2 cut(s)	462, 497
Sau3AI	GATC	3 cut(s)	143, 253, 478
ScrFI	CCNGG	1 cut(s)	130
SfaNI	GCATC	2 cut(s)	334, 342
SmiMI	CAYNNNNRTG	1 cut(s)	53
Sse9I	AATT	5 cut(s)	111, 383, 395, 593, 602
SsiI	CCGC	7 cut(s)	25, 46, 171, 238, 355, 462, 466
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	104, 157
TaiI	ACGT	4 cut(s)	57, 76, 89, 139
TaqI	TCGA	1 cut(s)	183
TasI	AATT	5 cut(s)	111, 383, 395, 593, 602
TatI	WGTACW	1 cut(s)	471
TauI	GCSGC	1 cut(s)	464
Tru1I	TTAA	3 cut(s)	231, 270, 625
Tru9I	TTAA	3 cut(s)	231, 270, 625
TscAI	CASTG	2 cut(s)	343, 364
TseFI	GTSAC	4 cut(s)	55, 362, 387, 611
TseI	GCWGC	1 cut(s)	496
Tsp45I	GTSAC	4 cut(s)	55, 362, 387, 611
TspDTI	ATGAA	2 cut(s)	261, 327
TspGWI	ACGGA	3 cut(s)	71, 96, 557
TspRI	CASTG	2 cut(s)	343, 364
XapI	RAATTY	2 cut(s)	395, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.