Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Forward (+)

58565248 .. 58573766

Gene Structure 8519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40338

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTTGAGTTTGCAGCAGGCATTTCCAATTGCCGACGCCTCTCACGCGACCTTTCCCCCCTCACGTGCCATCCCTTCGTCACTCCATCTCCACCGCCGGTCAGTCTCTTTTCCGACCACACGGTCACGTGTCCGATCATTCCCCACCTTCCGGAAATGCACCACTTGTCTCGCATTCGATTTCAAAAGTGGCAAAGGAATGAGTGGGTTTCATGATGTTGAGCTCAAAGTCCGCGATTACGAGCTTGATCAGTATGGTGTTGTTAACAATGCTGTCTTTGCAAGTTACTGCCAGCACGGTCGTCATGAACTTCTGGAAAGGGTTGGCATGAGCGCTGATGCGGTTGCCCGTACTGGTGATGCACTAGCATTGTCAGAATTGTCTCTCAAATTCATTGCGCCTCTAAGAAGTGGAGACAAGTTTGTCATAAAGGTGAGGGTGGCCAACTCTTCAGCTGCTCGCTTGTATTTTGATCACTTTATTTTCAAGCTGCCAAATCTAGAGCCTATCTTGGAAGCAAAGGCCACTGCAGTGTGGCTTGATAAAAACTATCGCCCTATCCGTATTCCGCCGGAGGTGAGATCTAAACTTGTTCAATTTCTTCGCCGTGAGGAGTCTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

207

Amino Acids

23.4

Weight (kDa)

9.81

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	77 - 197	3e-17	Thioesterase-like superfamily
4HBT	PF03061	85 - 166	3.3e-10	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	121, 422
AccII	CGCG	2 cut(s)	47, 234
AccIII	TCCGGA	1 cut(s)	150
AciI	CCGC	4 cut(s)	94, 232, 341, 569
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	389
AcuI	CTGAAG	1 cut(s)	435
AcvI	CACGTG	2 cut(s)	65, 128
AcyI	GRCGYC	1 cut(s)	36
AfaI	GTAC	1 cut(s)	352
AfeI	AGCGCT	1 cut(s)	334
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	184, 487, 596
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	4 cut(s)	223, 244, 455, 490
AluI	AGCT	4 cut(s)	223, 244, 455, 490
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	4 cut(s)	109, 173, 387, 408
Aor13HI	TCCGGA	1 cut(s)	150
Aor51HI	AGCGCT	1 cut(s)	334
AoxI	GGCC	2 cut(s)	441, 522
ApeKI	GCWGC	3 cut(s)	13, 455, 490
ApoI	RAATTY	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	335, 400
AsuHPI	GGTGA	3 cut(s)	368, 445, 589
BalI	TGGCCA	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	225
BbrPI	CACGTG	2 cut(s)	65, 128
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	25, 442, 477
BccI	CCATC	2 cut(s)	77, 93
BceAI	ACGGC	1 cut(s)	591
BclI	TGATCA	2 cut(s)	247, 472
BcoDI	GTCTC	4 cut(s)	109, 173, 387, 408
BfaI	CTAG	2 cut(s)	365, 500
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	336
BglII	AGATCT	1 cut(s)	581
BisI	GCNGC	3 cut(s)	14, 456, 491
BlsI	GCNGC	3 cut(s)	15, 457, 492
BmsI	GCATC	2 cut(s)	328, 349
BsaAI	YACGTR	2 cut(s)	65, 128
BsaHI	GRCGYC	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	96
Bse1I	ACTGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	393
BseAI	TCCGGA	1 cut(s)	150
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	358
BseXI	GCAGC	3 cut(s)	25, 442, 477
Bsh1236I	CGCG	2 cut(s)	47, 234
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	443, 524
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	97, 151, 572
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	4 cut(s)	109, 173, 387, 408
BsmI	GAATGC	1 cut(s)	173
BsnI	GGCC	2 cut(s)	443, 524
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	134, 247, 472, 581
BspACI	CCGC	4 cut(s)	94, 232, 341, 569
BspANI	GGCC	2 cut(s)	443, 524
BspEI	TCCGGA	1 cut(s)	150
BspFNI	CGCG	2 cut(s)	47, 234
BspHI	TCATGA	2 cut(s)	211, 304
BspMAI	CTGCAG	1 cut(s)	532
BsrDI	GCAATG	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	96
BssMI	GATC	4 cut(s)	134, 247, 472, 581
BssNI	GRCGYC	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	123, 299
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	1 cut(s)	36
BstBAI	YACGTR	2 cut(s)	65, 128
BstC8I	GCNNGC	3 cut(s)	18, 293, 460
BstDEI	CTNAG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	69
BstFNI	CGCG	2 cut(s)	47, 234
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	2 cut(s)	335, 400
BstKTI	GATC	4 cut(s)	137, 250, 475, 584
BstMAI	GTCTC	4 cut(s)	109, 173, 387, 408
BstMBI	GATC	4 cut(s)	134, 247, 472, 581
BstMCI	CGRYCG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 278
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	2 cut(s)	47, 234
BstV1I	GCAGC	3 cut(s)	25, 442, 477
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
BsuRI	GGCC	2 cut(s)	443, 524
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	2 cut(s)	525, 537
BtsIMutI	CAGTG	2 cut(s)	525, 537
Cac8I	GCNNGC	3 cut(s)	18, 293, 460
CciI	TCATGA	2 cut(s)	211, 304
CfoI	GCGC	2 cut(s)	335, 400
Cfr10I	RCCGGY	1 cut(s)	96
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	3 cut(s)	212, 305, 328
CviJI	RGCY	8 cut(s)	223, 244, 443, 455, 490, 505, 524, 538
CviKI_1	RGCY	8 cut(s)	223, 244, 443, 455, 490, 505, 524, 538
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	1 cut(s)	404
DpnI	GATC	4 cut(s)	136, 249, 474, 583
DpnII	GATC	4 cut(s)	134, 247, 472, 581
DrdI	GACNNNNNNGTC	2 cut(s)	121, 422
DseDI	GACNNNNNNGTC	2 cut(s)	121, 422
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
EciI	GGCGGA	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	223
Eco24I	GRGCYC	1 cut(s)	225
Eco47III	AGCGCT	1 cut(s)	334
Eco53kI	GAGCTC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	435
Eco72I	CACGTG	2 cut(s)	65, 128
EcoICRI	GAGCTC	1 cut(s)	223
EcoT38I	GRGCYC	1 cut(s)	225
FaeI	CATG	3 cut(s)	215, 308, 331
FaiI	YATR	5 cut(s)	213, 255, 306, 329, 428
FatI	CATG	3 cut(s)	211, 304, 327
FbaI	TGATCA	2 cut(s)	247, 472
Fnu4HI	GCNGC	3 cut(s)	14, 456, 491
FokI	GGATG	1 cut(s)	56
FriOI	GRGCYC	1 cut(s)	225
Fsp4HI	GCNGC	3 cut(s)	14, 456, 491
FspBI	CTAG	2 cut(s)	365, 500
GlaI	GCGC	2 cut(s)	334, 399
GluI	GCNGC	3 cut(s)	14, 456, 491
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	2 cut(s)	443, 524
HapII	CCGG	3 cut(s)	97, 151, 572
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	335, 400
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	215, 308, 331
Hin6I	GCGC	2 cut(s)	333, 398
HinP1I	GCGC	2 cut(s)	333, 398
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HinfI	GANTC	1 cut(s)	614
HpaI	GTTAAC	1 cut(s)	265
HpaII	CCGG	3 cut(s)	97, 151, 572
HphI	GGTGA	3 cut(s)	368, 445, 589
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	3 cut(s)	114, 134, 376
Hpy188III	TCNNGA	5 cut(s)	151, 212, 305, 314, 500
Hpy8I	GTNNAC	1 cut(s)	265
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	84, 157
HpyCH4III	ACNGT	2 cut(s)	123, 299
HpyCH4IV	ACGT	2 cut(s)	64, 127
HpyCH4V	TGCA	5 cut(s)	13, 159, 281, 362, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 278
HpyF3I	CTNAG	1 cut(s)	404
HpySE526I	ACGT	2 cut(s)	64, 127
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	215, 308, 331
HspAI	GCGC	2 cut(s)	333, 398
Kpn2I	TCCGGA	1 cut(s)	150
Ksp22I	TGATCA	2 cut(s)	247, 472
KspAI	GTTAAC	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	134, 247, 472, 581
LpnPI	CCDG	7 cut(s)	2, 110, 164, 299, 305, 339, 585
Lsp1109I	GCAGC	3 cut(s)	25, 442, 477
LweI	GCATC	2 cut(s)	328, 349
MaeI	CTAG	2 cut(s)	365, 500
MaeII	ACGT	2 cut(s)	64, 127
MaeIII	GTNAC	3 cut(s)	78, 123, 284
MalI	GATC	4 cut(s)	136, 249, 474, 583
MboI	GATC	4 cut(s)	134, 247, 472, 581
MboII	GAAGA	2 cut(s)	441, 593
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	581
MhlI	GDGCHC	1 cut(s)	225
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	4 cut(s)	27, 377, 389, 596
MluNI	TGGCCA	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	623
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	6 cut(s)	49, 70, 411, 429, 568, 604
Mox20I	TGGCCA	1 cut(s)	443
MroI	TCCGGA	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	443
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	431, 530
Msp20I	TGGCCA	1 cut(s)	443
MspA1I	CMGCKG	1 cut(s)	455
MspI	CCGG	3 cut(s)	97, 151, 572
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	173
MvnI	CGCG	2 cut(s)	47, 234
MwoI	GCNNNNNNNGC	2 cut(s)	44, 278
NdeII	GATC	4 cut(s)	134, 247, 472, 581
NlaIII	CATG	3 cut(s)	215, 308, 331
NmuCI	GTSAC	2 cut(s)	78, 123
OliI	CACNNNNGTG	1 cut(s)	530
PagI	TCATGA	2 cut(s)	211, 304
PcsI	WCGNNNNNNNCGW	1 cut(s)	559
PctI	GAATGC	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	15, 457, 492
PleI	GAGTC	1 cut(s)	622
PmaCI	CACGTG	2 cut(s)	65, 128
PmlI	CACGTG	2 cut(s)	65, 128
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	2 cut(s)	65, 128
Psp124BI	GAGCTC	1 cut(s)	225
PspCI	CACGTG	2 cut(s)	65, 128
PstI	CTGCAG	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	455
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
RseI	CAYNNNNRTG	2 cut(s)	431, 530
SacI	GAGCTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	3 cut(s)	14, 456, 491
Sau3AI	GATC	4 cut(s)	134, 247, 472, 581
SchI	GAGTC	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	225
SfaNI	GCATC	2 cut(s)	328, 349
SfcI	CTRYAG	1 cut(s)	528
SmiMI	CAYNNNNRTG	2 cut(s)	431, 530
Sse9I	AATT	4 cut(s)	27, 377, 389, 596
SsiI	CCGC	4 cut(s)	94, 232, 341, 569
SspMI	CTAG	2 cut(s)	365, 500
SstI	GAGCTC	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	123, 299
TaiI	ACGT	2 cut(s)	67, 130
TaqI	TCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	27, 377, 389, 596
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	532, 537
TseFI	GTSAC	2 cut(s)	78, 123
TseI	GCWGC	3 cut(s)	13, 455, 490
Tsp45I	GTSAC	2 cut(s)	78, 123
TspDTI	ATGAA	3 cut(s)	200, 321, 382
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	2 cut(s)	532, 537
XapI	RAATTY	1 cut(s)	389
XbaI	TCTAGA	1 cut(s)	499
XspI	CTAG	2 cut(s)	365, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.