Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001887

Physical Location & Seq

Genomic Coordinates Reverse (-)

9231521 .. 9235857

Gene Structure 4337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006634

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTTGAGGTTGCAGGCATTTTCACTTCCCGACTACAATCATGTGACCTTTCCCTCCTCGCACGTCATTCCTACTTCACTCCATCTCCGTCGTCAGTGGGTATCTTTTCCCACTACACTGGCGCGTTTCCGATCACTGTCTACCTACAGGATGTGCAGCACTTCCCTTGCATGCGATTTCGGAGGTGGCATAGGAATGAGTGGTTTTTATGACGTTGAGCTTAAAGTCCGCGACTATGAGCTTGATCAGTATGGCGTCGTTAACAATGCTGTCTATGCAAGTTATTGCCAGCACGGTCTTCATGAACTTCTTGAAGGGGTTGGCATGAGTGCTGATGAAGTTGCCCGAACCGACAAGTTTGTCATAAAGGTCGGGATGACCCACTCCTCAGCCGCTCGCGTGTACTTTGATCAGTTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTGGAAGCAAAGGCCACAGGAGTGTGGCTTGATAAAGGCTATCGCCCTGTCCGTATTCCATCGGAGTTGACATCTAAATTTGTCCAGTTTCGTCGCCATCAGGAGTCTAACGGTGTCCTGCACAACGGAGTTAGTCCCAGGGAAAGTCTTCGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004312 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016295 GO:0016296 GO:0016297 GO:0016740 GO:0016746 GO:0016747 GO:0016787 GO:0016788 GO:0016790 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0047381

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

4HBT 4HBT_2

Protein Analysis

202

Amino Acids

22.85

Weight (kDa)

8.76

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001887)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35250 AT1G35250 AT1G35250 AT1G35290 AT1G68260 AT1G68280
fragaria_vesca	FvH4_4g27130 FvH4_4g27130 FvH4_4g27160
malus_domestica	MD16G1041000.v1.1
prunus_persica	Prupe.1G313100_v2.0.a1
pyrus_communis	pycom16g03560
rosa_chinensis	RchiOBHm_Chr4g0434941 RchiOBHm_Chr4g0434951 RchiOBHm_Chr6g0286141 RchiOBHm_Chr6g0286191 RchiOBHm_Chr6g0286261 RchiOBHm_Chr6g0286291 RchiOBHm_Chr6g0286301 RchiOBHm_Chr6g0286321
rosa_laevigata	RLG00000006634 RLG00000006635 RLG00000012577 RLG00000012582
rosa_multiflora	Rmu_sc0008447.1_g000002 Rmu_sc0023421.1_g000003 Rmu_sc0038458.1_g000001
rosa_roxburghii	Rroxscaffold_5G00376130 Rroxscaffold_7G00182430 Rroxscaffold_7G00202130
rosa_rugosa	Rorug04G0281200 Rorug04G0281300 Rorug06G0179200
rosa_samantha	Rh4AG336600 Rh4CG359000 Rh4CG359200 Rh6AG291500 Rh6AG291700 Rh6BG294700 Rh6BG294900
rosa_wichuraiana	Rw0G020390 Rw4G029330 Rw4G029340 Rw6G025110 Rw6G025120 Rw6G025130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	140
AccII	CGCG	3 cut(s)	124, 231, 399
AciI	CCGC	2 cut(s)	229, 393
AcsI	RAATTY	1 cut(s)	524
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	2 cut(s)	314, 424
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	584
AleI	CACNNNNGTG	1 cut(s)	467
AluBI	AGCT	3 cut(s)	220, 241, 427
AluI	AGCT	3 cut(s)	220, 241, 427
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	2 cut(s)	156, 427
ApoI	RAATTY	1 cut(s)	524
Asp700I	GAANNNNTTC	1 cut(s)	594
AspLEI	GCGC	1 cut(s)	124
BbsI	GAAGAC	2 cut(s)	290, 587
BbvCI	CCTCAGC	1 cut(s)	388
BbvI	GCAGC	2 cut(s)	168, 414
BccI	CCATC	3 cut(s)	90, 514, 552
BciT130I	CCWGG	1 cut(s)	586
BclI	TGATCA	2 cut(s)	244, 409
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	145
BisI	GCNGC	3 cut(s)	157, 393, 428
BlsI	GCNGC	3 cut(s)	158, 394, 429
Bme1390I	CCNGG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	586
BpiI	GAAGAC	2 cut(s)	290, 587
Bpu10I	CCTNAGC	1 cut(s)	388
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	584, 585
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bse1I	ACTGG	2 cut(s)	123, 532
BseBI	CCWGG	1 cut(s)	586
BseDI	CCNNGG	2 cut(s)	584, 585
BseGI	GGATG	2 cut(s)	156, 381
BseMII	CTCAG	1 cut(s)	402
BseNI	ACTGG	2 cut(s)	123, 532
BseRI	GAGGAG	2 cut(s)	46, 376
BseXI	GCAGC	2 cut(s)	168, 414
BsgI	GTGCAG	2 cut(s)	175, 551
Bsh1236I	CGCG	3 cut(s)	124, 231, 399
BshFI	GGCC	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	461
Bsp143I	GATC	3 cut(s)	131, 244, 409
BspACI	CCGC	2 cut(s)	229, 393
BspANI	GGCC	1 cut(s)	461
BspCNI	CTCAG	1 cut(s)	401
BspFNI	CGCG	3 cut(s)	124, 231, 399
BspHI	TCATGA	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	395
BsrI	ACTGG	2 cut(s)	123, 532
BssECI	CCNNGG	2 cut(s)	584, 585
BssMI	GATC	3 cut(s)	131, 244, 409
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	586
Bst4CI	ACNGT	3 cut(s)	138, 296, 560
BstACI	GRCGYC	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	15, 172, 290, 397
BstDEI	CTNAG	1 cut(s)	388
BstF5I	GGATG	2 cut(s)	156, 381
BstFNI	CGCG	3 cut(s)	124, 231, 399
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	3 cut(s)	134, 247, 412
BstMBI	GATC	3 cut(s)	131, 244, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	586
BstNSI	RCATGY	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	584
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	3 cut(s)	124, 231, 399
BstV1I	GCAGC	2 cut(s)	168, 414
BstV2I	GAAGAC	2 cut(s)	290, 587
BstXI	CCANNNNNNTGG	1 cut(s)	118
BsuRI	GGCC	1 cut(s)	461
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	156, 381
BtsIMutI	CAGTG	3 cut(s)	101, 116, 134
Cac8I	GCNNGC	4 cut(s)	15, 172, 290, 397
CciI	TCATGA	1 cut(s)	301
CfoI	GCGC	1 cut(s)	124
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	4 cut(s)	41, 171, 302, 325
CviJI	RGCY	8 cut(s)	220, 241, 392, 427, 442, 461, 475, 486
CviKI_1	RGCY	8 cut(s)	220, 241, 392, 427, 442, 461, 475, 486
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	1 cut(s)	388
DpnI	GATC	3 cut(s)	133, 246, 411
DpnII	GATC	3 cut(s)	131, 244, 409
DrdI	GACNNNNNNGTC	1 cut(s)	359
DseDI	GACNNNNNNGTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	584
FaeI	CATG	4 cut(s)	44, 174, 305, 328
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	4 cut(s)	40, 170, 301, 324
FbaI	TGATCA	2 cut(s)	244, 409
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	3 cut(s)	157, 393, 428
FokI	GGATG	2 cut(s)	163, 388
Fsp4HI	GCNGC	3 cut(s)	157, 393, 428
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	3 cut(s)	157, 393, 428
HaeIII	GGCC	1 cut(s)	461
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	44, 174, 305, 328
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	2 cut(s)	262, 516
HindII	GTYRAC	2 cut(s)	262, 516
HinfI	GANTC	1 cut(s)	551
HpaI	GTTAAC	1 cut(s)	262
Hpy166II	GTNNAC	4 cut(s)	141, 262, 403, 516
Hpy188I	TCNGA	3 cut(s)	131, 182, 511
Hpy188III	TCNNGA	6 cut(s)	29, 302, 311, 373, 437, 548
Hpy8I	GTNNAC	4 cut(s)	141, 262, 403, 516
Hpy99I	CGWCG	3 cut(s)	93, 260, 543
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	3 cut(s)	138, 296, 560
HpyCH4IV	ACGT	2 cut(s)	63, 213
HpyCH4V	TGCA	5 cut(s)	13, 156, 170, 278, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	388
HpySE526I	ACGT	2 cut(s)	63, 213
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	44, 174, 305, 328
HspAI	GCGC	1 cut(s)	122
Ksp22I	TGATCA	2 cut(s)	244, 409
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	131, 244, 409
Lsp1109I	GCAGC	2 cut(s)	168, 414
MaeI	CTAG	1 cut(s)	437
MaeII	ACGT	2 cut(s)	63, 213
MaeIII	GTNAC	2 cut(s)	43, 599
MalI	GATC	3 cut(s)	133, 246, 411
MbiI	CCGCTC	1 cut(s)	395
MboI	GATC	3 cut(s)	131, 244, 409
MboII	GAAGA	2 cut(s)	290, 587
MluCI	AATT	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	4 cut(s)	64, 67, 176, 397
MroXI	GAANNNNTTC	1 cut(s)	594
MseI	TTAA	2 cut(s)	222, 261
MslI	CAYNNNNRTG	2 cut(s)	194, 467
MspR9I	CCNGG	1 cut(s)	586
MvaI	CCWGG	1 cut(s)	586
MvnI	CGCG	3 cut(s)	124, 231, 399
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	131, 244, 409
NlaIII	CATG	4 cut(s)	44, 174, 305, 328
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	467
PaeI	GCATGC	1 cut(s)	174
PagI	TCATGA	1 cut(s)	301
PasI	CCCWGGG	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	496
PdmI	GAANNNNTTC	1 cut(s)	594
PkrI	GCNGC	3 cut(s)	158, 394, 429
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	584
PspGI	CCWGG	1 cut(s)	584
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
RseI	CAYNNNNRTG	2 cut(s)	194, 467
SaqAI	TTAA	2 cut(s)	222, 261
SatI	GCNGC	3 cut(s)	157, 393, 428
Sau3AI	GATC	3 cut(s)	131, 244, 409
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	586
SfcI	CTRYAG	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	194, 467
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	1 cut(s)	524
SsiI	CCGC	2 cut(s)	229, 393
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	584
TaaI	ACNGT	3 cut(s)	138, 296, 560
TaiI	ACGT	2 cut(s)	66, 216
TasI	AATT	1 cut(s)	524
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	1 cut(s)	395
Tru1I	TTAA	2 cut(s)	222, 261
Tru9I	TTAA	2 cut(s)	222, 261
TscAI	CASTG	3 cut(s)	101, 123, 141
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	2 cut(s)	156, 427
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	4 cut(s)	290, 318, 351, 406
TspGWI	ACGGA	3 cut(s)	77, 488, 588
TspRI	CASTG	3 cut(s)	101, 123, 141
XapI	RAATTY	1 cut(s)	524
XbaI	TCTAGA	1 cut(s)	436
XceI	RCATGY	1 cut(s)	174
XmiI	GTMKAC	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	594
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.