AT1G50050

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002121
Physical Location & Seq
Forward (+)
18546086 .. 18549046
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50050.2

Sequence Viewer

Length: 681 bp
ATGAATACTTTCAAAACCCCATTTCTCATCATCGTTGCGATTAGCTTTCTGGTTCTTGCAACCAACGCTCAAAACGCTCAACAAGACTACCTTAACACTCACAACACCGCCCGTGCGCAGGTTGGAGTAGCGAATGTTGTGTGGGACACAGTCGTAGCGGCCTACGCAACAAACTATGCGAATGCTAGAAAAGTCGACTGCAGCCTCACGCCCTCAACTGGAGGATCTTATGGAGAAAACCTAGCCAATGGAAATAATGCCTTGTTCACAGGTGTAGCCGCCGTGAATCTTTGGGTTAACGAGAAACCTTACTACAACTACACTGCCAATGCATGCATAGGTGCACAACAATGCAAACATTACACGCAAGTGGTGTGGAGTAACTCGGTGAAGATAGGGTGTGCTAGGGTTCTATGCAACAATGGCGGGTATTTCGTGGGTTGTAACTATGATGCATCTGCTGCATTGAAGTCGCGTAAGATAACAGCAAGCGTAAGGCAAACAAGAGGACTTGGAGCGAGTGCTGCTTGTGGTCAGTTGAGAAATAAGTTTCAGAAAAGCCCTTCACTTGCCACTGCTGAGGGTGAAGTGATTGAAGCACGTTTGAGAAGTGAAGACTTTGATAATAGCTGCATAGGTTTTGCATTTACTTATATATGTGATGCATGCGTTGGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

226

Amino Acids

24.23

Weight (kDa)

8.66

Isoelectric Point (pI)

29.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 31 - 150 6.6e-20 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 679
Acc16I TGCGCA 1 cut(s) 117
Acc36I ACCTGC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 195
AccII CGCG 1 cut(s) 475
AciI CCGC 4 cut(s) 108, 158, 279, 426
AclWI GGATC 1 cut(s) 232
AfiI CCNNNNNNNGG 2 cut(s) 118, 218
AgsI TTSAA 3 cut(s) 13, 469, 596
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 2 cut(s) 45, 630
AluI AGCT 2 cut(s) 45, 630
Alw21I GWGCWC 1 cut(s) 346
Alw44I GTGCAC 1 cut(s) 342
AlwI GGATC 1 cut(s) 232
AoxI GGCC 1 cut(s) 159
ApaLI GTGCAC 1 cut(s) 342
ApeKI GCWGC 4 cut(s) 201, 461, 524, 630
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 118
AsuHPI GGTGA 2 cut(s) 400, 596
BaeGI GKGCMC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 346
BbvCI CCTCAGC 1 cut(s) 579
BbvI GCAGC 4 cut(s) 213, 448, 511, 617
BceAI ACGGC 1 cut(s) 266
BcgI CGANNNNNNTGC 2 cut(s) 453, 487
BfaI CTAG 3 cut(s) 186, 242, 405
BfmI CTRYAG 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 6 cut(s) 159, 202, 279, 462, 525, 631
BlsI GCNGC 6 cut(s) 160, 203, 280, 463, 526, 632
BmsI GCATC 3 cut(s) 442, 464, 652
BpiI GAAGAC 1 cut(s) 621
BpmI CTGGAG 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 579
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 218
Bse1I ACTGG 1 cut(s) 223
BseLI CCNNNNNNNGG 2 cut(s) 118, 218
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 1 cut(s) 223
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 4 cut(s) 213, 448, 511, 617
Bsh1236I CGCG 1 cut(s) 475
BshFI GGCC 1 cut(s) 161
BsiHKAI GWGCWC 1 cut(s) 346
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 2 cut(s) 118, 218
BsmFI GGGAC 1 cut(s) 158
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 4 cut(s) 108, 158, 279, 426
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 571
BspFNI CGCG 1 cut(s) 475
BspMAI CTGCAG 1 cut(s) 203
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 223
BssMI GATC 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 151
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 334, 490, 667
BstDEI CTNAG 1 cut(s) 579
BstFNI CGCG 1 cut(s) 475
BstHHI GCGC 1 cut(s) 118
BstKTI GATC 1 cut(s) 227
BstMBI GATC 1 cut(s) 224
BstMWI GCNNNNNNNGC 6 cut(s) 65, 74, 164, 423, 461, 524
BstNSI RCATGY 2 cut(s) 336, 669
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 346
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 4 cut(s) 213, 448, 511, 617
BstV2I GAAGAC 1 cut(s) 621
BstX2I RGATCY 1 cut(s) 224
BstYI RGATCY 1 cut(s) 224
BsuRI GGCC 1 cut(s) 161
BtsI GCAGTG 2 cut(s) 321, 573
BtsIMutI CAGTG 2 cut(s) 321, 573
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 3 cut(s) 334, 490, 667
CfoI GCGC 1 cut(s) 118
CspCI CAANNNNNGTGG 2 cut(s) 356, 391
CviAII CATG 2 cut(s) 333, 666
CviJI RGCY 7 cut(s) 45, 161, 204, 245, 278, 561, 630
CviKI_1 RGCY 7 cut(s) 45, 161, 204, 245, 278, 561, 630
DdeI CTNAG 1 cut(s) 579
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
EcoT22I ATGCAT 4 cut(s) 334, 338, 457, 667
FaeI CATG 2 cut(s) 336, 669
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 332, 665
FauI CCCGC 1 cut(s) 419
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 6 cut(s) 159, 202, 279, 462, 525, 631
Fsp4HI GCNGC 6 cut(s) 159, 202, 279, 462, 525, 631
FspBI CTAG 3 cut(s) 186, 242, 405
FspI TGCGCA 1 cut(s) 117
GlaI GCGC 1 cut(s) 117
GluI GCNGC 6 cut(s) 159, 202, 279, 462, 525, 631
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 161
HhaI GCGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 336, 669
Hin6I GCGC 1 cut(s) 116
HinP1I GCGC 1 cut(s) 116
HincII GTYRAC 2 cut(s) 196, 298
HindII GTYRAC 2 cut(s) 196, 298
HinfI GANTC 1 cut(s) 286
HpaI GTTAAC 1 cut(s) 298
HphI GGTGA 2 cut(s) 400, 596
Hpy166II GTNNAC 4 cut(s) 196, 267, 298, 344
Hpy188I TCNGA 1 cut(s) 555
Hpy8I GTNNAC 4 cut(s) 196, 267, 298, 344
HpyAV CCTTC 1 cut(s) 573
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 1 cut(s) 601
HpyF10VI GCNNNNNNNGC 6 cut(s) 65, 74, 164, 423, 461, 524
HpyF3I CTNAG 1 cut(s) 579
HpySE526I ACGT 1 cut(s) 601
Hsp92II CATG 2 cut(s) 336, 669
HspAI GCGC 1 cut(s) 116
KspAI GTTAAC 1 cut(s) 298
Kzo9I GATC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 515
LpnPI CCDG 4 cut(s) 35, 104, 204, 255
Lsp1109I GCAGC 4 cut(s) 213, 448, 511, 617
LweI GCATC 3 cut(s) 442, 464, 652
MaeI CTAG 3 cut(s) 186, 242, 405
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 2 cut(s) 380, 443
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 2 cut(s) 403, 626
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 103
MnlI CCTC 5 cut(s) 215, 215, 223, 500, 574
Mph1103I ATGCAT 4 cut(s) 334, 338, 457, 667
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 2 cut(s) 93, 297
MslI CAYNNNNRTG 2 cut(s) 349, 368
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 6 cut(s) 65, 74, 164, 423, 461, 524
NdeII GATC 1 cut(s) 224
NlaIII CATG 2 cut(s) 336, 669
NsbI TGCGCA 1 cut(s) 117
NsiI ATGCAT 4 cut(s) 334, 338, 457, 667
NspI RCATGY 2 cut(s) 336, 669
OliI CACNNNNGTG 1 cut(s) 368
PaeI GCATGC 2 cut(s) 336, 669
PctI GAATGC 1 cut(s) 187
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 286
PflFI GACNNNGTC 1 cut(s) 149
PkrI GCNGC 6 cut(s) 160, 203, 280, 463, 526, 632
PsiI TTATAA 1 cut(s) 679
PstI CTGCAG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 149
RseI CAYNNNNRTG 2 cut(s) 349, 368
SalI GTCGAC 1 cut(s) 194
SaqAI TTAA 2 cut(s) 93, 297
SatI GCNGC 6 cut(s) 159, 202, 279, 462, 525, 631
Sau3AI GATC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 346
SfaNI GCATC 3 cut(s) 442, 464, 652
SfcI CTRYAG 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 349, 368
SphI GCATGC 2 cut(s) 336, 669
SsiI CCGC 4 cut(s) 108, 158, 279, 426
SspMI CTAG 3 cut(s) 186, 242, 405
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 1 cut(s) 604
TaqI TCGA 1 cut(s) 195
TauI GCSGC 2 cut(s) 161, 281
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 2 cut(s) 93, 297
Tru9I TTAA 2 cut(s) 93, 297
TscAI CASTG 2 cut(s) 328, 580
TseI GCWGC 4 cut(s) 201, 461, 524, 630
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 2 cut(s) 328, 580
Tth111I GACNNNGTC 1 cut(s) 149
VneI GTGCAC 1 cut(s) 342
XceI RCATGY 2 cut(s) 336, 669
XmiI GTMKAC 1 cut(s) 195
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 3 cut(s) 186, 242, 405
Zsp2I ATGCAT 4 cut(s) 334, 338, 457, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.