Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002121

Physical Location & Seq

Genomic Coordinates Forward (+)

6150946 .. 6151422

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGCTCTGGTTCTTTTACTTCTCTATGTGATAGGGTTGGCAATGGTTCCTCCCTCCTATGCCCAGAATTCACAACAAGACTACCTCAATGCACACAATGCGGCTCGCACACAAGTCGGAGTGGCAAACATCATGTGGGACAGCACTGTTGCTGCCTACGCTCTGAACTACACCAAGTCAAGGATCGCGGATTGCAATCTCGTCCACTCAGGAGGGCCTTACGGCGAAAATTTAGCCAAAGGCAGCGGCTCATTCACGGCCACTGCTGCGGTTAATTTGTGGGTGGCGGAAAAGCCTTACTACAACTACACTTCCAATGCTTGCACCGGCGGAAAGCAGTGCCTGCACTATACTCAAGTTGTGTGGGCAGAGTCTGTTAGGTTGGGGTGCGCTAGGCTTCAATGTAGCAATTTGTGGTGGTTTGTTACATGCAGCTATGATCCACCAGGCAACTACATCGGGGAGCATCCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

158

Amino Acids

17.33

Weight (kDa)

6.87

Isoelectric Point (pI)

36.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	29 - 146	2.2e-16	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50050 AT1G50050 AT1G50060
fragaria_vesca	FvH4_2g02850 FvH4_2g02921 FvH4_2g02940 FvH4_2g02950
malus_domestica	MD10G1112900.v1.1
prunus_persica	Prupe.8G152700_v2.0.a1
pyrus_communis	pycom10g09770
rosa_chinensis	RchiOBHm_Chr6g0247661 RchiOBHm_Chr6g0247731 RchiOBHm_Chr6g0247741
rosa_laevigata	RLG00000015183 RLG00000015184
rosa_multiflora	Rmu_sc0003092.1_g000034 Rmu_sc0004057.1_g000007 Rmu_sc0009569.1_g000001 Rmu_sc0009569.1_g000002 Rmu_sc0039728.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433280 Rroxscaffold_180G00433300 Rroxscaffold_180G00433310 Rroxscaffold_7G00213700 Rroxscaffold_7G00213710 Rroxscaffold_7G00213720
rosa_rugosa	Rorug05G0528100 Rorug05G0528200
rosa_samantha	Rh6AG043100 Rh6AG043200 Rh6AG043300 Rh6BG037100 Rh6BG037700 Rh6BG037900 Rh6CG036600 Rh6CG036700 Rh6DG033600 Rh6DG033700
rosa_wichuraiana	Rw6G003650 Rw6G003700 Rw6G003710 Rw6G003720 Rw6G003740 Rw6G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	188
AciI	CCGC	6 cut(s)	101, 188, 246, 269, 287, 330
AclWI	GGATC	2 cut(s)	191, 434
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	2 cut(s)	67, 229
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	1 cut(s)	435
AluI	AGCT	1 cut(s)	435
AlwI	GGATC	2 cut(s)	191, 434
AlwNI	CAGNNNCTG	2 cut(s)	343, 374
AoxI	GGCC	2 cut(s)	215, 258
ApeKI	GCWGC	4 cut(s)	152, 243, 266, 432
ApoI	RAATTY	2 cut(s)	67, 229
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	1 cut(s)	215
BbvI	GCAGC	4 cut(s)	139, 253, 255, 444
BceAI	ACGGC	2 cut(s)	238, 273
BcgI	CGANNNNNNTGC	4 cut(s)	97, 131, 439, 473
BciT130I	CCWGG	1 cut(s)	447
BfaI	CTAG	1 cut(s)	393
BisI	GCNGC	6 cut(s)	102, 153, 244, 247, 267, 433
BlsI	GCNGC	6 cut(s)	103, 154, 245, 248, 268, 434
Bme1390I	CCNGG	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	195
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	326
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	222
BseXI	GCAGC	4 cut(s)	139, 253, 255, 444
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	217, 260
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	217, 260
Bsp143I	GATC	2 cut(s)	183, 439
BspACI	CCGC	6 cut(s)	101, 188, 246, 269, 287, 330
BspANI	GGCC	2 cut(s)	217, 260
BspCNI	CTCAG	1 cut(s)	221
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	2 cut(s)	191, 434
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	2 cut(s)	183, 439
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	148
BstAPI	GCANNNNNTGC	2 cut(s)	98, 343
BstC8I	GCNNGC	3 cut(s)	106, 322, 344
BstDEI	CTNAG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	466
BstFNI	CGCG	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	2 cut(s)	186, 442
BstMBI	GATC	2 cut(s)	183, 439
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 158, 266, 343
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	445
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	4 cut(s)	139, 253, 255, 444
BsuRI	GGCC	2 cut(s)	217, 260
BtsCI	GGATG	1 cut(s)	466
BtsI	GCAGTG	2 cut(s)	261, 344
BtsIMutI	CAGTG	3 cut(s)	144, 261, 344
Cac8I	GCNNGC	3 cut(s)	106, 322, 344
CaiI	CAGNNNCTG	2 cut(s)	343, 374
CfoI	GCGC	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	1 cut(s)	215
CspCI	CAANNNNNGTGG	2 cut(s)	344, 379
CviAII	CATG	2 cut(s)	133, 429
CviJI	RGCY	9 cut(s)	5, 104, 217, 236, 249, 260, 295, 397, 435
CviKI_1	RGCY	9 cut(s)	5, 104, 217, 236, 249, 260, 295, 397, 435
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	2 cut(s)	185, 441
DpnII	GATC	2 cut(s)	183, 439
EaeI	YGGCCR	1 cut(s)	258
EciI	GGCGGA	2 cut(s)	302, 345
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	2 cut(s)	136, 432
FaiI	YATR	7 cut(s)	27, 60, 134, 351, 430, 438, 472
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	2 cut(s)	132, 428
Fnu4HI	GCNGC	6 cut(s)	102, 153, 244, 247, 267, 433
FokI	GGATG	1 cut(s)	453
Fsp4HI	GCNGC	6 cut(s)	102, 153, 244, 247, 267, 433
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	391
GluI	GCNGC	6 cut(s)	102, 153, 244, 247, 267, 433
HaeIII	GGCC	2 cut(s)	217, 260
HapII	CCGG	1 cut(s)	327
HhaI	GCGC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	136, 432
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	1 cut(s)	327
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	119, 165
Hpy188III	TCNNGA	1 cut(s)	210
Hpy8I	GTNNAC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	5 cut(s)	92, 195, 324, 346, 432
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 158, 266, 343
HpyF3I	CTNAG	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	136, 432
HspAI	GCGC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	183, 439
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	6 cut(s)	77, 195, 340, 356, 432, 459
Lsp1109I	GCAGC	4 cut(s)	139, 253, 255, 444
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	2 cut(s)	185, 441
MboI	GATC	2 cut(s)	183, 439
MluCI	AATT	4 cut(s)	67, 229, 274, 409
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	4 cut(s)	60, 64, 95, 206
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	98, 158, 266, 343
NdeII	GATC	2 cut(s)	183, 439
NlaIII	CATG	2 cut(s)	136, 432
NlaIV	GGNNCC	1 cut(s)	48
NspI	RCATGY	1 cut(s)	432
PkrI	GCNGC	6 cut(s)	103, 154, 245, 248, 268, 434
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	215
PstNI	CAGNNNCTG	2 cut(s)	343, 374
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	6 cut(s)	102, 153, 244, 247, 267, 433
Sau3AI	GATC	2 cut(s)	183, 439
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	3 cut(s)	87, 383, 437
SgrAI	CRCCGGYG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
Sse9I	AATT	4 cut(s)	67, 229, 274, 409
SsiI	CCGC	6 cut(s)	101, 188, 246, 269, 287, 330
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	148
TasI	AATT	4 cut(s)	67, 229, 274, 409
TauI	GCSGC	2 cut(s)	104, 249
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	3 cut(s)	151, 268, 344
TseI	GCWGC	4 cut(s)	152, 243, 266, 432
TspRI	CASTG	3 cut(s)	151, 268, 344
XapI	RAATTY	2 cut(s)	67, 229
XceI	RCATGY	1 cut(s)	432
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.