Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039728.1

Orthogroup ID

OG0002121

Physical Location & Seq

Genomic Coordinates Reverse (-)

869 .. 1306

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039728.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggttcctgatccctcccatgtccgggactcaccacaagactacctcaatgtacacaatgtggctcgagcacgagttggagttgcaaacatcaggtgggacaacactgttgccgcctacgctctgaagtacaccaagtcgaggctaggggattgcaatctcgtccactcaggagggccttacggagagaatttagccaaaggcagcggctcgtttacggccgcggctgcggccaatatgtgggtggcggagaagccttactacaactacacctccaatgcttgcaccggcggaaagcagtgcaggcactatactcaagtggtgtgggcaaagtctcttagggtggggtgtgctaggcttcaatgcaggaattcgtggtggtttgttacatgcagctattatccaccaggcaactacatcgggcagcgtccatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

145

Amino Acids

16.18

Weight (kDa)

9.41

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50050 AT1G50050 AT1G50060
fragaria_vesca	FvH4_2g02850 FvH4_2g02921 FvH4_2g02940 FvH4_2g02950
malus_domestica	MD10G1112900.v1.1
prunus_persica	Prupe.8G152700_v2.0.a1
pyrus_communis	pycom10g09770
rosa_chinensis	RchiOBHm_Chr6g0247661 RchiOBHm_Chr6g0247731 RchiOBHm_Chr6g0247741
rosa_laevigata	RLG00000015183 RLG00000015184
rosa_multiflora	Rmu_sc0003092.1_g000034 Rmu_sc0004057.1_g000007 Rmu_sc0009569.1_g000001 Rmu_sc0009569.1_g000002 Rmu_sc0039728.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433280 Rroxscaffold_180G00433300 Rroxscaffold_180G00433310 Rroxscaffold_7G00213700 Rroxscaffold_7G00213710 Rroxscaffold_7G00213720
rosa_rugosa	Rorug05G0528100 Rorug05G0528200
rosa_samantha	Rh6AG043100 Rh6AG043200 Rh6AG043300 Rh6BG037100 Rh6BG037700 Rh6BG037900 Rh6CG036600 Rh6CG036700 Rh6DG033600 Rh6DG033700
rosa_wichuraiana	Rw6G003650 Rw6G003700 Rw6G003710 Rw6G003720 Rw6G003740 Rw6G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	240
AccII	CGCG	1 cut(s)	224
AciI	CCGC	7 cut(s)	114, 207, 222, 224, 230, 248, 291
AclWI	GGATC	1 cut(s)	5
AcoI	YGGCCR	2 cut(s)	219, 231
AcsI	RAATTY	2 cut(s)	190, 370
AcuI	CTGAAG	1 cut(s)	146
AdeI	CACNNNGTG	1 cut(s)	61
AfaI	GTAC	2 cut(s)	54, 131
AfiI	CCNNNNNNNGG	4 cut(s)	24, 25, 141, 240
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	406
AluBI	AGCT	1 cut(s)	396
AluI	AGCT	1 cut(s)	396
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	5
Ama87I	CYCGRG	1 cut(s)	66
AoxI	GGCC	3 cut(s)	176, 219, 231
ApeKI	GCWGC	4 cut(s)	204, 227, 393, 424
ApoI	RAATTY	2 cut(s)	190, 370
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	66
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
BauI	CACGAG	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	3 cut(s)	214, 216, 405
BceAI	ACGGC	1 cut(s)	234
BcgI	CGANNNNNNTGC	2 cut(s)	400, 434
BciT130I	CCWGG	1 cut(s)	408
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	2 cut(s)	146, 354
BisI	GCNGC	9 cut(s)	114, 205, 208, 222, 225, 228, 231, 394, 425
BlsI	GCNGC	9 cut(s)	115, 206, 209, 223, 226, 229, 232, 395, 426
Bme1390I	CCNGG	2 cut(s)	26, 408
BmeT110I	CYCGRG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	26, 408
BpuEI	CTTGAG	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 25, 141, 240
Bse118I	RCCGGY	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	4 cut(s)	24, 25, 141, 240
BseMII	CTCAG	1 cut(s)	183
BseX3I	CGGCCG	1 cut(s)	219
BseXI	GCAGC	3 cut(s)	214, 216, 405
BsgI	GTGCAG	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	178, 221, 233
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	25, 288
BslFI	GGGAC	2 cut(s)	41, 113
BslI	CCNNNNNNNGG	4 cut(s)	24, 25, 141, 240
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	2 cut(s)	41, 113
BsnI	GGCC	3 cut(s)	178, 221, 233
BsoBI	CYCGRG	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp1407I	TGTACA	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	7 cut(s)	114, 207, 222, 224, 230, 248, 291
BspANI	GGCC	3 cut(s)	178, 221, 233
BspCNI	CTCAG	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	10
BssSI	CACGAG	1 cut(s)	72
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	109
BstAUI	TGTACA	1 cut(s)	52
BstC8I	GCNNGC	2 cut(s)	283, 305
BstDEI	CTNAG	2 cut(s)	169, 338
BstDSI	CCRYGG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	10
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 227, 230, 304
BstNI	CCWGG	1 cut(s)	408
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	24, 406
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	3 cut(s)	214, 216, 405
BstZI	CGGCCG	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	178, 221, 233
BtgI	CCRYGG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	105, 305
Cac8I	GCNNGC	2 cut(s)	283, 305
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	176
Cfr42I	CCGCGG	1 cut(s)	225
CseI	GACGC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	53, 130
CspCI	CAANNNNNGTGG	2 cut(s)	305, 340
CviAII	CATG	2 cut(s)	20, 390
CviQI	GTAC	2 cut(s)	53, 130
DdeI	CTNAG	2 cut(s)	169, 338
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
DraIII	CACNNNGTG	1 cut(s)	61
EaeI	YGGCCR	2 cut(s)	219, 231
EagI	CGGCCG	1 cut(s)	219
EciI	GGCGGA	2 cut(s)	263, 306
EclXI	CGGCCG	1 cut(s)	219
Eco52I	CGGCCG	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	66
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	406
FaeI	CATG	2 cut(s)	23, 393
FaiI	YATR	5 cut(s)	21, 239, 312, 391, 433
FaqI	GGGAC	2 cut(s)	41, 113
FatI	CATG	2 cut(s)	19, 389
Fnu4HI	GCNGC	9 cut(s)	114, 205, 208, 222, 225, 228, 231, 394, 425
Fsp4HI	GCNGC	9 cut(s)	114, 205, 208, 222, 225, 228, 231, 394, 425
FspBI	CTAG	2 cut(s)	146, 354
GluI	GCNGC	9 cut(s)	114, 205, 208, 222, 225, 228, 231, 394, 425
HaeIII	GGCC	3 cut(s)	178, 221, 233
HapII	CCGG	2 cut(s)	25, 288
HgaI	GACGC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	23, 393
HinfI	GANTC	1 cut(s)	29
HpaII	CCGG	2 cut(s)	25, 288
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	4 cut(s)	55, 132, 166, 216
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	8, 171
Hpy8I	GTNNAC	4 cut(s)	55, 132, 166, 216
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	6 cut(s)	86, 156, 285, 303, 366, 393
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 227, 230, 304
HpyF3I	CTNAG	2 cut(s)	169, 338
Hsp92II	CATG	2 cut(s)	23, 393
KspI	CCGCGG	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	10
LpnPI	CCDG	9 cut(s)	21, 38, 79, 156, 289, 301, 352, 393, 420
Lsp1109I	GCAGC	3 cut(s)	214, 216, 405
MaeI	CTAG	2 cut(s)	146, 354
MaeIII	GTNAC	1 cut(s)	385
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	2 cut(s)	190, 370
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	5 cut(s)	25, 56, 135, 167, 283
MspA1I	CMGCKG	2 cut(s)	207, 224
MspI	CCGG	2 cut(s)	25, 288
MspR9I	CCNGG	2 cut(s)	26, 408
MvaI	CCWGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	4 cut(s)	119, 227, 230, 304
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	2 cut(s)	23, 393
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	393
PaeR7I	CTCGAG	1 cut(s)	66
PflMI	CCANNNNNTGG	1 cut(s)	240
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	9 cut(s)	115, 206, 209, 223, 226, 229, 232, 395, 426
PleI	GAGTC	1 cut(s)	23
PpsI	GAGTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	406
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	176
PspXI	VCTCGAGB	1 cut(s)	66
RsaI	GTAC	2 cut(s)	54, 131
RsaNI	GTAC	2 cut(s)	53, 130
SacII	CCGCGG	1 cut(s)	225
SatI	GCNGC	9 cut(s)	114, 205, 208, 222, 225, 228, 231, 394, 425
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	2 cut(s)	26, 408
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	4 cut(s)	48, 98, 275, 398
Sfr274I	CTCGAG	1 cut(s)	66
Sfr303I	CCGCGG	1 cut(s)	225
SgrAI	CRCCGGYG	1 cut(s)	287
SgrBI	CCGCGG	1 cut(s)	225
SlaI	CTCGAG	1 cut(s)	66
SmlI	CTYRAG	2 cut(s)	66, 315
SmoI	CTYRAG	2 cut(s)	66, 315
Sse9I	AATT	2 cut(s)	190, 370
SsiI	CCGC	7 cut(s)	114, 207, 222, 224, 230, 248, 291
SspMI	CTAG	2 cut(s)	146, 354
StyD4I	CCNGG	2 cut(s)	24, 406
TaaI	ACNGT	1 cut(s)	109
TaqI	TCGA	2 cut(s)	67, 140
TasI	AATT	2 cut(s)	190, 370
TatI	WGTACW	2 cut(s)	52, 129
TauI	GCSGC	5 cut(s)	116, 210, 224, 227, 233
TscAI	CASTG	2 cut(s)	112, 305
TseI	GCWGC	4 cut(s)	204, 227, 393, 424
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	2 cut(s)	112, 305
Van91I	CCANNNNNTGG	1 cut(s)	240
XapI	RAATTY	2 cut(s)	190, 370
XceI	RCATGY	1 cut(s)	393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XhoI	CTCGAG	1 cut(s)	66
XspI	CTAG	2 cut(s)	146, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.