Rw6G003650

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002121
Physical Location & Seq
Forward (+)
6014562 .. 6015008
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003650.1

Sequence Viewer

Length: 411 bp
ATGGGATTTGCACTAGATTACCTCAACGCCCACAATGCCGCTCGTGCCCAGGTCGGAGTCAAGCCATTGACATGGAGCAACTCTCTAGTAGCCTACGCCCAGCAATACGAAAGCAAGAGAATTGCAGACTGCAAATCGGAGCATTCTACCGGTCCCTACGGTGAGAACATTGCCGAAGCCTCGTACGCGATAACGAGCTCGAGAGCAATGGAATTATGGGTCAATGAGAAGCCGAGTTACAACTATCAGTTGAATAAATGCGTCGGAGGCCAGTGCGGTCATTATACTCGGGTAGTAATTTGGCGGAATTCGGCTCAGGTTGGGTGCGCTAGGGTTAGCAACAGTGGGTGGTGGTTCGTCACTTGCAACTACAACCCTCCCGGTAACATTGTTGGGGAACGGCCGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

136

Amino Acids

15.16

Weight (kDa)

8.61

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 8 - 124 6.8e-17 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 1 cut(s) 188
AciI CCGC 3 cut(s) 39, 276, 304
AcoI YGGCCR 1 cut(s) 401
AcsI RAATTY 1 cut(s) 307
AfaI GTAC 1 cut(s) 185
AgeI ACCGGT 1 cut(s) 149
AgsI TTSAA 1 cut(s) 253
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 200
Ama87I CYCGRG 2 cut(s) 199, 288
AoxI GGCC 2 cut(s) 268, 401
ApoI RAATTY 1 cut(s) 307
AsiGI ACCGGT 1 cut(s) 149
AspLEI GCGC 1 cut(s) 329
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 1 cut(s) 173
AvaI CYCGRG 2 cut(s) 199, 288
AvaII GGWCC 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 200
BarI GAAGNNNNNNTAC 2 cut(s) 221, 253
BauI CACGAG 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 50
BcnI CCSGG 1 cut(s) 381
BfaI CTAG 3 cut(s) 14, 86, 330
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 50, 381
Bme18I GGWCC 1 cut(s) 152
BmeT110I CYCGRG 2 cut(s) 199, 288
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 2 cut(s) 50, 381
BplI GAGNNNNNCTC 2 cut(s) 67, 99
Bpu10I CCTNAGC 1 cut(s) 315
BpuMI CCSGG 1 cut(s) 381
BsaJI CCNNGG 1 cut(s) 48
BsaWI WCCGGW 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 2 cut(s) 168, 213
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 48
BseMI GCAATG 2 cut(s) 168, 213
BseMII CTCAG 1 cut(s) 329
BseNI ACTGG 1 cut(s) 271
BseSI GKGCMC 1 cut(s) 49
BseX3I CGGCCG 1 cut(s) 401
BseYI CCCAGC 1 cut(s) 99
Bsh1236I CGCG 1 cut(s) 188
Bsh1285I CGRYCG 1 cut(s) 404
BshFI GGCC 2 cut(s) 270, 403
BshTI ACCGGT 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 200
BsiHKCI CYCGRG 2 cut(s) 199, 288
BsiSI CCGG 2 cut(s) 150, 381
BsiWI CGTACG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 142
BsnI GGCC 2 cut(s) 270, 403
BsoBI CYCGRG 2 cut(s) 199, 288
Bsp1286I GDGCHC 2 cut(s) 49, 200
BspACI CCGC 3 cut(s) 39, 276, 304
BspANI GGCC 2 cut(s) 270, 403
BspCNI CTCAG 1 cut(s) 328
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 2 cut(s) 168, 213
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 271
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 48
BssSI CACGAG 1 cut(s) 42
Bst2BI CACGAG 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 161, 344
BstDEI CTNAG 1 cut(s) 315
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 329
BstMCI CGRYCG 1 cut(s) 404
BstMWI GCNNNNNNNGC 4 cut(s) 35, 44, 185, 267
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 48, 379
BstSLI GKGCMC 1 cut(s) 49
BstUI CGCG 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 72
BstZI CGGCCG 1 cut(s) 401
BsuRI GGCC 2 cut(s) 270, 403
BtsIMutI CAGTG 2 cut(s) 278, 349
CfoI GCGC 1 cut(s) 329
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 152
CseI GACGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 184
CspAI ACCGGT 1 cut(s) 149
CviAII CATG 1 cut(s) 72
CviJI RGCY 8 cut(s) 64, 92, 179, 198, 232, 270, 314, 403
CviKI_1 RGCY 8 cut(s) 64, 92, 179, 198, 232, 270, 314, 403
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 401
EagI CGGCCG 1 cut(s) 401
EciI GGCGGA 1 cut(s) 319
Ecl136II GAGCTC 1 cut(s) 198
EclXI CGGCCG 1 cut(s) 401
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 152
Eco52I CGGCCG 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 198
Eco88I CYCGRG 2 cut(s) 199, 288
EcoICRI GAGCTC 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 1 cut(s) 75
FaiI YATR 3 cut(s) 73, 217, 285
FaqI GGGAC 1 cut(s) 138
FatI CATG 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 39
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 3 cut(s) 14, 86, 330
GlaI GCGC 1 cut(s) 328
GluI GCNGC 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 2 cut(s) 270, 403
HapII CCGG 2 cut(s) 150, 381
HgaI GACGC 1 cut(s) 250
HhaI GCGC 1 cut(s) 329
Hin1II CATG 1 cut(s) 75
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HinfI GANTC 1 cut(s) 57
HpaII CCGG 2 cut(s) 150, 381
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 3 cut(s) 56, 139, 266
Hpy188III TCNNGA 1 cut(s) 201
Hpy99I CGWCG 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 161, 344
HpyCH4V TGCA 4 cut(s) 11, 125, 132, 366
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 44, 185, 267
HpyF3I CTNAG 1 cut(s) 315
Hsp92II CATG 1 cut(s) 75
HspAI GCGC 1 cut(s) 327
LmnI GCTCC 2 cut(s) 75, 139
LpnPI CCDG 7 cut(s) 35, 62, 113, 163, 284, 302, 394
MaeI CTAG 3 cut(s) 14, 86, 330
MaeIII GTNAC 3 cut(s) 236, 358, 383
MbiI CCGCTC 1 cut(s) 41
MhlI GDGCHC 2 cut(s) 49, 200
MluCI AATT 4 cut(s) 120, 212, 297, 307
MlyI GAGTC 1 cut(s) 66
MmeI TCCRAC 2 cut(s) 34, 244
MnlI CCTC 4 cut(s) 32, 190, 260, 387
MslI CAYNNNNRTG 1 cut(s) 70
MspI CCGG 2 cut(s) 150, 381
MspR9I CCNGG 2 cut(s) 50, 381
Mva1269I GAATGC 1 cut(s) 142
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 4 cut(s) 35, 44, 185, 267
NciI CCSGG 1 cut(s) 381
NlaIII CATG 1 cut(s) 75
NlaIV GGNNCC 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 358
PaeR7I CTCGAG 1 cut(s) 199
PctI GAATGC 1 cut(s) 142
Pfl23II CGTACG 1 cut(s) 183
PinAI ACCGGT 1 cut(s) 149
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 48
PspLI CGTACG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 152
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
RseI CAYNNNNRTG 1 cut(s) 70
SacI GAGCTC 1 cut(s) 200
SatI GCNGC 1 cut(s) 39
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 2 cut(s) 50, 381
SduI GDGCHC 2 cut(s) 49, 200
SetI ASST 4 cut(s) 24, 54, 200, 321
Sfr274I CTCGAG 1 cut(s) 199
SinI GGWCC 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 199
SmiMI CAYNNNNRTG 1 cut(s) 70
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 4 cut(s) 120, 212, 297, 307
SsiI CCGC 3 cut(s) 39, 276, 304
SspMI CTAG 3 cut(s) 14, 86, 330
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 2 cut(s) 48, 379
TaaI ACNGT 2 cut(s) 161, 344
TaqI TCGA 1 cut(s) 200
TasI AATT 4 cut(s) 120, 212, 297, 307
TauI GCSGC 1 cut(s) 41
TscAI CASTG 2 cut(s) 278, 349
TseFI GTSAC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 358
TspRI CASTG 2 cut(s) 278, 349
VpaK11BI GGWCC 1 cut(s) 152
XapI RAATTY 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 199
XspI CTAG 3 cut(s) 14, 86, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.