Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002121

Physical Location & Seq

Genomic Coordinates Forward (+)

3486058 .. 3487337

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG036600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCTTTGATTCGTTTATTTCTCTATGTGATAGGGTTGGTAATGGTTCCTGATCCCTCCCATGTCCGGGACTCACCACAAGACTACCTCAATGTACACAATGTGGCTCGAGCACGAGTTGGAGTGGCAAACATCAGGTGGGACAACACTGTTGCCGCCTACGCTCTGAAGTACACCAAGTCGAGGCTAGGGGATTGCAATCTCGTCCACTCAGGAGGGCCTTACGGCGAGAATTTAGCCAAAGGCAGCGGCTCGTTTACGGCCGCAGCTGCGGCCAATATGTGGGTGGCGGAGAAGCCTTACTACAACTACACCTCCAATGCTTGCACCGGCGGAAAGCAGTGCAGGCACTATACTCAAGTGGTGTGGGCAAAGTCTGTTAGGGTGGGGTGTGCTAGGCTTCAATGCAGGAATTCGTGGTGGTTTGTTACATGCAGCTATTATCCACCAGGCAACTACATCGGGCAGCGCCCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

159

Amino Acids

17.77

Weight (kDa)

9.49

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAP	PF00188	30 - 147	2.2e-16	Cysteine-rich secretory protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50050 AT1G50050 AT1G50060
fragaria_vesca	FvH4_2g02850 FvH4_2g02921 FvH4_2g02940 FvH4_2g02950
malus_domestica	MD10G1112900.v1.1
prunus_persica	Prupe.8G152700_v2.0.a1
pyrus_communis	pycom10g09770
rosa_chinensis	RchiOBHm_Chr6g0247661 RchiOBHm_Chr6g0247731 RchiOBHm_Chr6g0247741
rosa_laevigata	RLG00000015183 RLG00000015184
rosa_multiflora	Rmu_sc0003092.1_g000034 Rmu_sc0004057.1_g000007 Rmu_sc0009569.1_g000001 Rmu_sc0009569.1_g000002 Rmu_sc0039728.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433280 Rroxscaffold_180G00433300 Rroxscaffold_180G00433310 Rroxscaffold_7G00213700 Rroxscaffold_7G00213710 Rroxscaffold_7G00213720
rosa_rugosa	Rorug05G0528100 Rorug05G0528200
rosa_samantha	Rh6AG043100 Rh6AG043200 Rh6AG043300 Rh6BG037100 Rh6BG037700 Rh6BG037900 Rh6CG036600 Rh6CG036700 Rh6DG033600 Rh6DG033700
rosa_wichuraiana	Rw6G003650 Rw6G003700 Rw6G003710 Rw6G003720 Rw6G003740 Rw6G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	282
AciI	CCGC	6 cut(s)	156, 249, 264, 272, 290, 333
AclWI	GGATC	1 cut(s)	47
AcoI	YGGCCR	2 cut(s)	261, 273
AcsI	RAATTY	2 cut(s)	232, 412
AcuI	CTGAAG	1 cut(s)	188
AdeI	CACNNNGTG	1 cut(s)	103
AfaI	GTAC	2 cut(s)	96, 173
AfiI	CCNNNNNNNGG	4 cut(s)	66, 67, 183, 282
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	2 cut(s)	269, 438
AluI	AGCT	2 cut(s)	269, 438
Alw21I	GWGCWC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	47
Ama87I	CYCGRG	1 cut(s)	108
AoxI	GGCC	3 cut(s)	218, 261, 273
ApeKI	GCWGC	5 cut(s)	246, 266, 269, 435, 466
ApoI	RAATTY	2 cut(s)	232, 412
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	66
AvaI	CYCGRG	1 cut(s)	108
BarI	GAAGNNNNNNTAC	2 cut(s)	287, 319
BauI	CACGAG	1 cut(s)	114
Bbv12I	GWGCWC	1 cut(s)	115
BbvI	GCAGC	4 cut(s)	256, 258, 278, 447
BceAI	ACGGC	2 cut(s)	241, 276
BcgI	CGANNNNNNTGC	2 cut(s)	442, 476
BciT130I	CCWGG	1 cut(s)	450
BcnI	CCSGG	1 cut(s)	68
BfaI	CTAG	2 cut(s)	188, 396
BfoI	RGCGCY	1 cut(s)	472
BisI	GCNGC	9 cut(s)	156, 247, 250, 264, 267, 270, 273, 436, 467
BlsI	GCNGC	9 cut(s)	157, 248, 251, 265, 268, 271, 274, 437, 468
Bme1390I	CCNGG	2 cut(s)	68, 450
BmeT110I	CYCGRG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	68, 450
BpuEI	CTTGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 67, 183, 282
Bse118I	RCCGGY	1 cut(s)	329
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	450
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	4 cut(s)	66, 67, 183, 282
BseMII	CTCAG	1 cut(s)	225
BseX3I	CGGCCG	1 cut(s)	261
BseXI	GCAGC	4 cut(s)	256, 258, 278, 447
BsgI	GTGCAG	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	264
BshFI	GGCC	3 cut(s)	220, 263, 275
BsiEI	CGRYCG	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	67, 330
BslFI	GGGAC	2 cut(s)	83, 155
BslI	CCNNNNNNNGG	4 cut(s)	66, 67, 183, 282
BsmFI	GGGAC	2 cut(s)	83, 155
BsnI	GGCC	3 cut(s)	220, 263, 275
BsoBI	CYCGRG	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	6 cut(s)	156, 249, 264, 272, 290, 333
BspANI	GGCC	3 cut(s)	220, 263, 275
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	47
BsrFI	RCCGGY	1 cut(s)	329
BsrGI	TGTACA	1 cut(s)	94
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	1 cut(s)	52
BssSI	CACGAG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	1 cut(s)	151
BstAUI	TGTACA	1 cut(s)	94
BstC8I	GCNNGC	2 cut(s)	325, 347
BstDEI	CTNAG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	472
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstMCI	CGRYCG	1 cut(s)	264
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 269, 272, 346
BstNI	CCWGG	1 cut(s)	450
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	66, 448
BstV1I	GCAGC	4 cut(s)	256, 258, 278, 447
BstZI	CGGCCG	1 cut(s)	261
BsuRI	GGCC	3 cut(s)	220, 263, 275
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	2 cut(s)	147, 347
Cac8I	GCNNGC	2 cut(s)	325, 347
CfoI	GCGC	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	95, 172
CspCI	CAANNNNNGTGG	2 cut(s)	347, 382
CviAII	CATG	2 cut(s)	62, 432
CviQI	GTAC	2 cut(s)	95, 172
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
DraIII	CACNNNGTG	1 cut(s)	103
EaeI	YGGCCR	2 cut(s)	261, 273
EagI	CGGCCG	1 cut(s)	261
EciI	GGCGGA	2 cut(s)	305, 348
EclXI	CGGCCG	1 cut(s)	261
Eco52I	CGGCCG	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	412
EcoRII	CCWGG	1 cut(s)	448
FaeI	CATG	2 cut(s)	65, 435
FaiI	YATR	6 cut(s)	27, 63, 281, 354, 433, 475
FaqI	GGGAC	2 cut(s)	83, 155
FatI	CATG	2 cut(s)	61, 431
Fnu4HI	GCNGC	9 cut(s)	156, 247, 250, 264, 267, 270, 273, 436, 467
Fsp4HI	GCNGC	9 cut(s)	156, 247, 250, 264, 267, 270, 273, 436, 467
FspBI	CTAG	2 cut(s)	188, 396
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	9 cut(s)	156, 247, 250, 264, 267, 270, 273, 436, 467
HaeII	RGCGCY	1 cut(s)	472
HaeIII	GGCC	3 cut(s)	220, 263, 275
HapII	CCGG	2 cut(s)	67, 330
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	2 cut(s)	65, 435
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HinfI	GANTC	2 cut(s)	10, 71
HpaII	CCGG	2 cut(s)	67, 330
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	4 cut(s)	97, 174, 208, 258
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	2 cut(s)	50, 213
Hpy8I	GTNNAC	4 cut(s)	97, 174, 208, 258
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	198, 327, 345, 408, 435
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 269, 272, 346
HpyF3I	CTNAG	1 cut(s)	211
Hsp92II	CATG	2 cut(s)	65, 435
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	9 cut(s)	63, 80, 121, 198, 331, 343, 394, 435, 462
Lsp1109I	GCAGC	4 cut(s)	256, 258, 278, 447
MaeI	CTAG	2 cut(s)	188, 396
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	2 cut(s)	232, 412
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	5 cut(s)	67, 98, 177, 209, 325
MspA1I	CMGCKG	2 cut(s)	249, 269
MspI	CCGG	2 cut(s)	67, 330
MspR9I	CCNGG	2 cut(s)	68, 450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	4 cut(s)	161, 269, 272, 346
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	65, 435
NlaIV	GGNNCC	1 cut(s)	48
NspI	RCATGY	1 cut(s)	435
PaeR7I	CTCGAG	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	66
PkrI	GCNGC	9 cut(s)	157, 248, 251, 265, 268, 271, 274, 437, 468
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	218
PspXI	VCTCGAGB	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	96, 173
RsaNI	GTAC	2 cut(s)	95, 172
SatI	GCNGC	9 cut(s)	156, 247, 250, 264, 267, 270, 273, 436, 467
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	2 cut(s)	68, 450
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	5 cut(s)	90, 140, 271, 317, 440
Sfr274I	CTCGAG	1 cut(s)	108
SgrAI	CRCCGGYG	1 cut(s)	329
SlaI	CTCGAG	1 cut(s)	108
SmlI	CTYRAG	2 cut(s)	108, 357
SmoI	CTYRAG	2 cut(s)	108, 357
Sse9I	AATT	2 cut(s)	232, 412
SsiI	CCGC	6 cut(s)	156, 249, 264, 272, 290, 333
SspMI	CTAG	2 cut(s)	188, 396
StyD4I	CCNGG	2 cut(s)	66, 448
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	2 cut(s)	109, 182
TasI	AATT	2 cut(s)	232, 412
TatI	WGTACW	2 cut(s)	94, 171
TauI	GCSGC	4 cut(s)	158, 252, 266, 275
TfiI	GAWTC	1 cut(s)	10
TscAI	CASTG	2 cut(s)	154, 347
TseI	GCWGC	5 cut(s)	246, 266, 269, 435, 466
TspRI	CASTG	2 cut(s)	154, 347
Van91I	CCANNNNNTGG	1 cut(s)	282
XapI	RAATTY	2 cut(s)	232, 412
XceI	RCATGY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	108
XspI	CTAG	2 cut(s)	188, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.