Rroxscaffold_7G00213720

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002121
Physical Location & Seq
Reverse (-)
64173278 .. 64173739
462 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213720.1

Sequence Viewer

Length: 462 bp
ATGGGCTTGACAACGGTACTGCTGGTTCAACCCTCCCATGCGCAAAATTCACAACAAGACTACGTCGATGCTCACAACGCGGCTCGTTTACAAGTTGGTGTACCAAATGTTACATGGGACGACACCGTTGCGGCCTATGCTCAATGCTACGCCAACTCAAGAATCAGGGACTGCAGTCTCATGCATTCGCATGGGCCTTACGGTGAGAACTTGGCCTACGGCTATGGCAGCAGCTCGTTCACAAGCGCCGACGCTGACAACTTGTGGCTTGCGGAGAAGCCTTACTACAACCACACCTCCAATTCCTGTGTTGGTGGACAGTGTCTGCACTATACTCAAGTGATTTGGCGCTACTCTATCAGGCTGGGGTGTGCTAGGGTCCAATGCAGCAACAGTGGGTGGTGGTATGTCACCTGCAACTATGATCCACCGGGCAGCTACTGCGGCAAGCGTCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

153

Amino Acids

17.08

Weight (kDa)

6.56

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 22 - 141 2e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 422
Acc16I TGCGCA 1 cut(s) 42
Acc36I ACCTGC 1 cut(s) 422
AccII CGCG 1 cut(s) 80
AciI CCGC 4 cut(s) 80, 131, 272, 444
AclWI GGATC 1 cut(s) 419
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 2 cut(s) 18, 102
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 2 cut(s) 234, 438
AluI AGCT 2 cut(s) 234, 438
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 1 cut(s) 419
AlwNI CAGNNNCTG 3 cut(s) 171, 325, 441
AoxI GGCC 3 cut(s) 132, 194, 213
ApeKI GCWGC 4 cut(s) 228, 231, 387, 435
ApoI RAATTY 1 cut(s) 46
AspLEI GCGC 3 cut(s) 43, 248, 351
AspS9I GGNCC 2 cut(s) 194, 379
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 215, 403
AvaII GGWCC 1 cut(s) 379
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
BbvI GCAGC 4 cut(s) 240, 243, 399, 447
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcnI CCSGG 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 172
BfoI RGCGCY 2 cut(s) 249, 352
BfuAI ACCTGC 1 cut(s) 422
BisI GCNGC 7 cut(s) 81, 132, 229, 232, 388, 436, 445
BlsI GCNGC 7 cut(s) 82, 133, 230, 233, 389, 437, 446
Bme1390I CCNGG 1 cut(s) 432
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 194, 379
BmiI GGNNCC 1 cut(s) 380
BmrFI CCNGG 1 cut(s) 432
BmsI GCATC 1 cut(s) 58
BoxI GACNNNNGTC 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 142, 321
BpuMI CCSGG 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
BseXI GCAGC 4 cut(s) 240, 243, 399, 447
BseYI CCCAGC 1 cut(s) 364
BsgI GTGCAG 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 3 cut(s) 134, 196, 215
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 3 cut(s) 131, 182, 438
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 3 cut(s) 131, 182, 438
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 3 cut(s) 134, 196, 215
Bsp143I GATC 1 cut(s) 424
BspACI CCGC 4 cut(s) 80, 131, 272, 444
BspANI GGCC 3 cut(s) 134, 196, 215
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 380
BspMAI CTGCAG 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 422
BspPI GGATC 1 cut(s) 419
BssMI GATC 1 cut(s) 424
Bst4CI ACNGT 5 cut(s) 16, 127, 203, 321, 395
BstAPI GCANNNNNTGC 1 cut(s) 441
BstC8I GCNNGC 2 cut(s) 270, 449
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 2 cut(s) 249, 352
BstHHI GCGC 3 cut(s) 43, 248, 351
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 5 cut(s) 77, 137, 228, 441, 444
BstPAI GACNNNNGTC 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 172
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 4 cut(s) 240, 243, 399, 447
BsuRI GGCC 3 cut(s) 134, 196, 215
BtsIMutI CAGTG 2 cut(s) 326, 400
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 2 cut(s) 270, 449
CaiI CAGNNNCTG 3 cut(s) 171, 325, 441
CfoI GCGC 3 cut(s) 43, 248, 351
Cfr13I GGNCC 2 cut(s) 194, 379
CseI GACGC 2 cut(s) 260, 440
Csp6I GTAC 2 cut(s) 17, 101
CviAII CATG 4 cut(s) 38, 114, 181, 191
CviQI GTAC 2 cut(s) 17, 101
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 186
FaeI CATG 4 cut(s) 41, 117, 184, 194
FaiI YATR 9 cut(s) 39, 115, 138, 182, 192, 225, 333, 408, 423
FaqI GGGAC 3 cut(s) 131, 182, 438
FatI CATG 4 cut(s) 37, 113, 180, 190
Fnu4HI GCNGC 7 cut(s) 81, 132, 229, 232, 388, 436, 445
Fsp4HI GCNGC 7 cut(s) 81, 132, 229, 232, 388, 436, 445
FspBI CTAG 1 cut(s) 375
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 3 cut(s) 42, 247, 350
GluI GCNGC 7 cut(s) 81, 132, 229, 232, 388, 436, 445
GsaI CCCAGC 1 cut(s) 368
HaeII RGCGCY 2 cut(s) 249, 352
HaeIII GGCC 3 cut(s) 134, 196, 215
HapII CCGG 1 cut(s) 431
HgaI GACGC 2 cut(s) 260, 440
HhaI GCGC 3 cut(s) 43, 248, 351
Hin1II CATG 4 cut(s) 41, 117, 184, 194
Hin6I GCGC 3 cut(s) 41, 246, 349
HinP1I GCGC 3 cut(s) 41, 246, 349
HinfI GANTC 1 cut(s) 162
HpaII CCGG 1 cut(s) 431
HphI GGTGA 2 cut(s) 215, 403
Hpy166II GTNNAC 4 cut(s) 89, 101, 240, 317
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 4 cut(s) 89, 101, 240, 317
Hpy99I CGWCG 2 cut(s) 68, 254
HpyCH4III ACNGT 5 cut(s) 16, 127, 203, 321, 395
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 5 cut(s) 174, 184, 328, 387, 417
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 137, 228, 441, 444
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 4 cut(s) 41, 117, 184, 194
HspAI GCGC 3 cut(s) 41, 246, 349
Kzo9I GATC 1 cut(s) 424
LpnPI CCDG 7 cut(s) 8, 151, 319, 346, 350, 427, 444
Lsp1109I GCAGC 4 cut(s) 240, 243, 399, 447
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 375
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 109, 409
MalI GATC 1 cut(s) 426
MboI GATC 1 cut(s) 424
MluCI AATT 2 cut(s) 46, 301
MnlI CCTC 2 cut(s) 43, 307
Mph1103I ATGCAT 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 189
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 432
Mva1269I GAATGC 1 cut(s) 184
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 5 cut(s) 77, 137, 228, 441, 444
NciI CCSGG 1 cut(s) 432
NdeII GATC 1 cut(s) 424
NlaIII CATG 4 cut(s) 41, 117, 184, 194
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 409
NsbI TGCGCA 1 cut(s) 42
NsiI ATGCAT 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 422
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 162
PflFI GACNNNGTC 2 cut(s) 62, 321
PkrI GCNGC 7 cut(s) 82, 133, 230, 233, 389, 437, 446
PshAI GACNNNNGTC 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 2 cut(s) 194, 379
PsrI GAACNNNNNNTAC 4 cut(s) 9, 41, 200, 232
PstI CTGCAG 1 cut(s) 176
PstNI CAGNNNCTG 3 cut(s) 171, 325, 441
PsyI GACNNNGTC 2 cut(s) 62, 321
RsaI GTAC 2 cut(s) 18, 102
RsaNI GTAC 2 cut(s) 17, 101
RseI CAYNNNNRTG 1 cut(s) 189
SatI GCNGC 7 cut(s) 81, 132, 229, 232, 388, 436, 445
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 2 cut(s) 194, 379
ScrFI CCNGG 1 cut(s) 432
SetI ASST 5 cut(s) 66, 236, 299, 416, 440
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 172
SinI GGWCC 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 157, 336
SmoI CTYRAG 2 cut(s) 157, 336
Sse9I AATT 2 cut(s) 46, 301
SsiI CCGC 4 cut(s) 80, 131, 272, 444
SspMI CTAG 1 cut(s) 375
StyD4I CCNGG 1 cut(s) 430
TaaI ACNGT 5 cut(s) 16, 127, 203, 321, 395
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 46, 301
TauI GCSGC 3 cut(s) 83, 134, 447
TfiI GAWTC 1 cut(s) 162
TscAI CASTG 2 cut(s) 326, 400
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 4 cut(s) 228, 231, 387, 435
Tsp45I GTSAC 1 cut(s) 409
TspRI CASTG 2 cut(s) 326, 400
Tth111I GACNNNGTC 2 cut(s) 62, 321
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XspI CTAG 1 cut(s) 375
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.