RchiOBHm_Chr6g0247741

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002121
Physical Location & Seq
Forward (+)
3769956 .. 3770327
372 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22207

Sequence Viewer

Length: 372 bp
ATGGCTCTGGTTCTTTTACTTCTCTATGTGATAGGGTTGGCAATGGTTCCTCCCTCCTATGCCCAGAATTCACAACAAGACTACCTCAAGTCGGAGTGGCAAACATCAGTCGGAGTGGCAAACATCATGTGGGACAGCACTGTTGCTGTCTACGCTCTGAACTACACCAAGTCAAGGATCGCGGATTGCAATCTCGTCCACTCAGGAGGGCCTTACGGCGAAAATTTAGCCAAAGGCAGCGGCTCATTCACGGCCACTGCTGCGGTTAATTTGTGGGTGGCGGAAAAGCCTTACTACAACTACACTTCCAATGCTTGCACCGGCGGAAAGCAGTGCCTGCACTATACTCAAGTTGTGTGGGCAGTCTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

123

Amino Acids

13.4

Weight (kDa)

6.69

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 36 - 121 2.8e-06 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AccII CGCG 1 cut(s) 182
AciI CCGC 5 cut(s) 182, 240, 263, 281, 324
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 2 cut(s) 67, 223
AfiI CCNNNNNNNGG 2 cut(s) 91, 174
AlwI GGATC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 337
AoxI GGCC 2 cut(s) 209, 252
ApeKI GCWGC 2 cut(s) 237, 260
ApoI RAATTY 2 cut(s) 67, 223
AspS9I GGNCC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 247, 249
BceAI ACGGC 2 cut(s) 232, 267
BisI GCNGC 3 cut(s) 238, 241, 261
BlsI GCNGC 3 cut(s) 239, 242, 262
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 48
BpuEI CTTGAG 2 cut(s) 71, 333
BsaBI GATNNNNATC 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 174
Bse118I RCCGGY 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 189
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 91, 174
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 216
BseXI GCAGC 2 cut(s) 247, 249
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 2 cut(s) 211, 254
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 91, 174
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 2 cut(s) 211, 254
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 5 cut(s) 182, 240, 263, 281, 324
BspANI GGCC 2 cut(s) 211, 254
BspCNI CTCAG 1 cut(s) 215
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 320
BssMI GATC 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 142
BstAPI GCANNNNNTGC 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 316, 338
BstDEI CTNAG 1 cut(s) 202
BstFNI CGCG 1 cut(s) 182
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstMWI GCNNNNNNNGC 3 cut(s) 152, 260, 337
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 247, 249
BsuRI GGCC 2 cut(s) 211, 254
BtsI GCAGTG 2 cut(s) 255, 338
BtsIMutI CAGTG 3 cut(s) 138, 255, 338
Cac8I GCNNGC 2 cut(s) 316, 338
CaiI CAGNNNCTG 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 209
CspCI CAANNNNNGTGG 1 cut(s) 338
CviAII CATG 1 cut(s) 127
CviJI RGCY 6 cut(s) 5, 211, 230, 243, 254, 289
CviKI_1 RGCY 6 cut(s) 5, 211, 230, 243, 254, 289
DdeI CTNAG 1 cut(s) 202
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
EaeI YGGCCR 1 cut(s) 252
EciI GGCGGA 2 cut(s) 296, 339
EcoO109I RGGNCCY 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 67
FaeI CATG 1 cut(s) 130
FaiI YATR 4 cut(s) 27, 60, 128, 345
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 126
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 3 cut(s) 238, 241, 261
Fsp4HI GCNGC 3 cut(s) 238, 241, 261
GluI GCNGC 3 cut(s) 238, 241, 261
HaeIII GGCC 2 cut(s) 211, 254
HapII CCGG 1 cut(s) 321
Hin1II CATG 1 cut(s) 130
HpaII CCGG 1 cut(s) 321
Hpy166II GTNNAC 2 cut(s) 151, 199
Hpy188I TCNGA 3 cut(s) 94, 113, 159
Hpy188III TCNNGA 1 cut(s) 204
Hpy8I GTNNAC 2 cut(s) 151, 199
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 189, 318, 340
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 260, 337
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 1 cut(s) 177
LpnPI CCDG 4 cut(s) 77, 189, 334, 350
Lsp1109I GCAGC 2 cut(s) 247, 249
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MluCI AATT 3 cut(s) 67, 223, 268
MmeI TCCRAC 2 cut(s) 72, 91
MnlI CCTC 4 cut(s) 60, 64, 95, 200
MseI TTAA 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 3 cut(s) 152, 260, 337
NdeII GATC 1 cut(s) 177
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 239, 242, 262
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 337
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 238, 241, 261
Sau3AI GATC 1 cut(s) 177
Sau96I GGNCC 1 cut(s) 209
SetI ASST 1 cut(s) 87
SgrAI CRCCGGYG 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 86, 348
SmoI CTYRAG 2 cut(s) 86, 348
Sse9I AATT 3 cut(s) 67, 223, 268
SsiI CCGC 5 cut(s) 182, 240, 263, 281, 324
TaaI ACNGT 1 cut(s) 142
TasI AATT 3 cut(s) 67, 223, 268
TauI GCSGC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 3 cut(s) 145, 262, 338
TseI GCWGC 2 cut(s) 237, 260
TspRI CASTG 3 cut(s) 145, 262, 338
XapI RAATTY 2 cut(s) 67, 223
XmiI GTMKAC 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.