FvH4_2g02850

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002121
Physical Location & Seq
Forward (+)
2248574 .. 2249058
485 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02850.t1

Sequence Viewer

Length: 387 bp
ATGGAGTCAACAATCAAATCATCCTTGGTCGGAGTCAAGCCACTGACATGGAGCAACTCACTAGCAGCCTACGCCCAGCAATACGCCAGAAAGAGAATTCCAGACTGCAAACTGGAGCATTCTACCGGTCCCTACGGCGAAAACATTGCCGAAGCATCGTACGCCATTACCGGCTCCAAAGCAGTGGAACTATGGATCGATGAGAAGCCGAGCTACAACTATCAGATGAATAAATGCGTTGGAGGCCAGTGCGGCCATTATACTCAGGTGGTTTGGCGCAATTCGGCTCAGGTTGGATGCGCTAGGGTTAAGTGCAACAATGGGTGGTGGTTCGTCACTTGCAACTACAATCCTCCCGGCAACATTGTTGGGGAACGACCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

129

Amino Acids

14.3

Weight (kDa)

8.74

Isoelectric Point (pI)

25.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 11 - 116 1.9e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 252
AclWI GGATC 1 cut(s) 203
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 96
AfaI GTAC 1 cut(s) 161
AgeI ACCGGT 1 cut(s) 125
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
AlwI GGATC 1 cut(s) 203
AoxI GGCC 2 cut(s) 244, 253
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 1 cut(s) 96
AsiGI ACCGGT 1 cut(s) 125
AspLEI GCGC 2 cut(s) 279, 302
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 357
AvaII GGWCC 1 cut(s) 128
BarI GAAGNNNNNNTAC 2 cut(s) 197, 229
BbvI GCAGC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BcnI CCSGG 1 cut(s) 357
BfaI CTAG 2 cut(s) 62, 303
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 2 cut(s) 66, 253
BlsI GCNGC 2 cut(s) 67, 254
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 130, 175
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 164, 287
BpmI CTGGAG 1 cut(s) 134
Bpu10I CCTNAGC 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 357
Bsa29I ATCGAT 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 1 cut(s) 125
Bse118I RCCGGY 2 cut(s) 125, 170
Bse1I ACTGG 2 cut(s) 117, 247
Bse3DI GCAATG 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 20, 302
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 278, 302
BseNI ACTGG 2 cut(s) 117, 247
BseXI GCAGC 1 cut(s) 77
BseYI CCCAGC 1 cut(s) 75
BshFI GGCC 2 cut(s) 246, 255
BshTI ACCGGT 1 cut(s) 125
BshVI ATCGAT 1 cut(s) 198
BsiSI CCGG 3 cut(s) 126, 171, 357
BsiWI CGTACG 1 cut(s) 159
BslFI GGGAC 1 cut(s) 114
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 118
BsnI GGCC 2 cut(s) 246, 255
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 1 cut(s) 252
BspANI GGCC 2 cut(s) 246, 255
BspCNI CTCAG 2 cut(s) 277, 301
BspDI ATCGAT 1 cut(s) 198
BspLI GGNNCC 2 cut(s) 130, 175
BspPI GGATC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 144
BsrFI RCCGGY 2 cut(s) 125, 170
BsrI ACTGG 2 cut(s) 117, 247
BssAI RCCGGY 2 cut(s) 125, 170
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 195
BssT1I CCWWGG 1 cut(s) 24
BstDEI CTNAG 2 cut(s) 264, 288
BstF5I GGATG 2 cut(s) 20, 302
BstHHI GCGC 2 cut(s) 279, 302
BstKTI GATC 1 cut(s) 198
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 4 cut(s) 71, 161, 243, 252
BstSCI CCNGG 1 cut(s) 355
BstV1I GCAGC 1 cut(s) 77
BstXI CCANNNNNNTGG 2 cut(s) 48, 184
Bsu15I ATCGAT 1 cut(s) 198
BsuRI GGCC 2 cut(s) 246, 255
BsuTUI ATCGAT 1 cut(s) 198
BtsCI GGATG 2 cut(s) 20, 302
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 3 cut(s) 41, 189, 254
CfoI GCGC 2 cut(s) 279, 302
Cfr10I RCCGGY 2 cut(s) 125, 170
Cfr13I GGNCC 1 cut(s) 128
ClaI ATCGAT 1 cut(s) 198
Csp6I GTAC 1 cut(s) 160
CspAI ACCGGT 1 cut(s) 125
CviAII CATG 1 cut(s) 48
CviJI RGCY 8 cut(s) 40, 68, 174, 208, 213, 246, 255, 287
CviKI_1 RGCY 8 cut(s) 40, 68, 174, 208, 213, 246, 255, 287
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 264, 288
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 24
Eco47I GGWCC 1 cut(s) 128
EcoRI GAATTC 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 51
FaiI YATR 3 cut(s) 49, 193, 261
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 66, 253
FokI GGATG 2 cut(s) 7, 309
Fsp4HI GCNGC 2 cut(s) 66, 253
FspBI CTAG 2 cut(s) 62, 303
GlaI GCGC 2 cut(s) 278, 301
GluI GCNGC 2 cut(s) 66, 253
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 2 cut(s) 246, 255
HapII CCGG 3 cut(s) 126, 171, 357
HhaI GCGC 2 cut(s) 279, 302
Hin1II CATG 1 cut(s) 51
Hin6I GCGC 2 cut(s) 277, 300
HinP1I GCGC 2 cut(s) 277, 300
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 2 cut(s) 5, 33
HpaII CCGG 3 cut(s) 126, 171, 357
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 2 cut(s) 32, 225
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 108, 315, 342
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 161, 243, 252
HpyF3I CTNAG 2 cut(s) 264, 288
Hsp92II CATG 1 cut(s) 51
HspAI GCGC 2 cut(s) 277, 300
Kzo9I GATC 1 cut(s) 195
LmnI GCTCC 3 cut(s) 51, 115, 179
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 164, 287
MaeI CTAG 2 cut(s) 62, 303
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 197
MboI GATC 1 cut(s) 195
MluCI AATT 2 cut(s) 96, 280
MlyI GAGTC 2 cut(s) 14, 42
MmeI TCCRAC 3 cut(s) 10, 220, 274
MnlI CCTC 2 cut(s) 236, 363
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 46
MspI CCGG 3 cut(s) 126, 171, 357
MspR9I CCNGG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 118
MwoI GCNNNNNNNGC 4 cut(s) 71, 161, 243, 252
NciI CCSGG 1 cut(s) 357
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 51
NlaIV GGNNCC 2 cut(s) 130, 175
NmeAIII GCCGAG 1 cut(s) 234
NmuCI GTSAC 1 cut(s) 334
PctI GAATGC 1 cut(s) 118
Pfl23II CGTACG 1 cut(s) 159
PinAI ACCGGT 1 cut(s) 125
PkrI GCNGC 2 cut(s) 67, 254
PleI GAGTC 2 cut(s) 13, 41
PpsI GAGTC 2 cut(s) 13, 41
PspFI CCCAGC 1 cut(s) 75
PspLI CGTACG 1 cut(s) 159
PspN4I GGNNCC 2 cut(s) 130, 175
PspPI GGNCC 1 cut(s) 128
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 2 cut(s) 66, 253
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 2 cut(s) 14, 42
ScrFI CCNGG 1 cut(s) 357
SetI ASST 3 cut(s) 215, 270, 294
SfaNI GCATC 2 cut(s) 164, 287
SfiI GGCCNNNNNGGCC 1 cut(s) 252
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 46
Sse9I AATT 2 cut(s) 96, 280
SsiI CCGC 1 cut(s) 252
SspMI CTAG 2 cut(s) 62, 303
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 24
TaqI TCGA 1 cut(s) 198
TasI AATT 2 cut(s) 96, 280
TauI GCSGC 1 cut(s) 255
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 3 cut(s) 48, 189, 254
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 242
TspRI CASTG 3 cut(s) 48, 189, 254
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 1 cut(s) 96
XspI CTAG 2 cut(s) 62, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.