Rw6G003740

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002121
Physical Location & Seq
Forward (+)
6147720 .. 6148199
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003740.1

Sequence Viewer

Length: 480 bp
ATGGCTTTGATTCGTTTATTTCTCTATGTGATAGGGTTGGTAATGGTTCCTGATCCCTCCCATGTCCGGGACTCACCACAAGACTACCTCAATGTACACAATGTGGCTCGAGCACGAGTTGGAGTTGCAAACATCAGGTGGGACAACACTGTTGCCGCCTACGCTCTGAAGTACACCAAATCCAGGCTAGGGGATTGCAATCTCGTCCACTCAGGAGGGCCTTACGGAGAGAATTTAGCCAAAGGCAGCGGCTCGTTTACAGCCGCGGCTGCGGCCAATATGTGGGTGGCGGAGAAGCCTTACTACAACTACACCTCCAATGCTTGCACCGGCGGAAAGCAGTGCAGGCACTATACTCAAGTGGTGTGGGCAAAGTCTCTTAGGGTGGGGTGTGCTAGGCTTCAATGCAGGAATTCGTGGTGGTTTGTTACATGCAGCTATTATCCACCAGGCAACTACATCGGGCAGCGTCCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

159

Amino Acids

17.78

Weight (kDa)

9.49

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 30 - 147 8e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 282
AccII CGCG 1 cut(s) 266
AciI CCGC 7 cut(s) 156, 249, 264, 266, 272, 290, 333
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 2 cut(s) 232, 412
AcuI CTGAAG 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 2 cut(s) 96, 173
AfiI CCNNNNNNNGG 5 cut(s) 66, 67, 183, 189, 282
AgsI TTSAA 1 cut(s) 404
AjnI CCWGG 2 cut(s) 182, 448
AluBI AGCT 1 cut(s) 438
AluI AGCT 1 cut(s) 438
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 1 cut(s) 47
Ama87I CYCGRG 1 cut(s) 108
AoxI GGCC 2 cut(s) 218, 273
ApeKI GCWGC 4 cut(s) 246, 269, 435, 466
ApoI RAATTY 2 cut(s) 232, 412
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 68
AsuHPI GGTGA 1 cut(s) 66
AvaI CYCGRG 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 287, 319
BauI CACGAG 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 256, 258, 447
BcgI CGANNNNNNTGC 2 cut(s) 442, 476
BciT130I CCWGG 2 cut(s) 184, 450
BcnI CCSGG 1 cut(s) 68
BcoDI GTCTC 1 cut(s) 381
BfaI CTAG 2 cut(s) 188, 396
BisI GCNGC 9 cut(s) 156, 247, 250, 264, 267, 270, 273, 436, 467
BlsI GCNGC 9 cut(s) 157, 248, 251, 265, 268, 271, 274, 437, 468
Bme1390I CCNGG 3 cut(s) 68, 184, 450
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 3 cut(s) 68, 184, 450
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 68
BsaBI GATNNNNATC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 67, 183, 189, 282
Bse118I RCCGGY 1 cut(s) 329
Bse8I GATNNNNATC 1 cut(s) 198
BseBI CCWGG 2 cut(s) 184, 450
BseDI CCNNGG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 5 cut(s) 66, 67, 183, 189, 282
BseMII CTCAG 1 cut(s) 225
BseXI GCAGC 3 cut(s) 256, 258, 447
BsgI GTGCAG 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 266
BshFI GGCC 2 cut(s) 220, 275
BsiHKAI GWGCWC 1 cut(s) 115
BsiHKCI CYCGRG 1 cut(s) 108
BsiSI CCGG 2 cut(s) 67, 330
BslFI GGGAC 2 cut(s) 83, 155
BslI CCNNNNNNNGG 5 cut(s) 66, 67, 183, 189, 282
BsmAI GTCTC 1 cut(s) 381
BsmFI GGGAC 2 cut(s) 83, 155
BsnI GGCC 2 cut(s) 220, 275
BsoBI CYCGRG 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 115
Bsp1407I TGTACA 1 cut(s) 94
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 7 cut(s) 156, 249, 264, 266, 272, 290, 333
BspANI GGCC 2 cut(s) 220, 275
BspCNI CTCAG 1 cut(s) 224
BspFNI CGCG 1 cut(s) 266
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 52
BssSI CACGAG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 184, 450
Bst4CI ACNGT 1 cut(s) 151
BstAUI TGTACA 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 325, 347
BstDEI CTNAG 2 cut(s) 211, 380
BstDSI CCRYGG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 266
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 4 cut(s) 161, 269, 272, 346
BstNI CCWGG 2 cut(s) 184, 450
BstNSI RCATGY 1 cut(s) 435
BstSCI CCNGG 3 cut(s) 66, 182, 448
BstUI CGCG 1 cut(s) 266
BstV1I GCAGC 3 cut(s) 256, 258, 447
BsuRI GGCC 2 cut(s) 220, 275
BtgI CCRYGG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 2 cut(s) 147, 347
Cac8I GCNNGC 2 cut(s) 325, 347
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 218
Cfr42I CCGCGG 1 cut(s) 267
CseI GACGC 1 cut(s) 458
Csp6I GTAC 2 cut(s) 95, 172
CspCI CAANNNNNGTGG 2 cut(s) 347, 382
CviAII CATG 2 cut(s) 62, 432
CviQI GTAC 2 cut(s) 95, 172
DdeI CTNAG 2 cut(s) 211, 380
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
DraIII CACNNNGTG 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 273
EciI GGCGGA 2 cut(s) 305, 348
Eco57I CTGAAG 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 2 cut(s) 182, 448
FaeI CATG 2 cut(s) 65, 435
FaiI YATR 6 cut(s) 27, 63, 281, 354, 433, 475
FaqI GGGAC 2 cut(s) 83, 155
FatI CATG 2 cut(s) 61, 431
Fnu4HI GCNGC 9 cut(s) 156, 247, 250, 264, 267, 270, 273, 436, 467
Fsp4HI GCNGC 9 cut(s) 156, 247, 250, 264, 267, 270, 273, 436, 467
FspBI CTAG 2 cut(s) 188, 396
GluI GCNGC 9 cut(s) 156, 247, 250, 264, 267, 270, 273, 436, 467
HaeIII GGCC 2 cut(s) 220, 275
HapII CCGG 2 cut(s) 67, 330
HgaI GACGC 1 cut(s) 458
Hin1II CATG 2 cut(s) 65, 435
HinfI GANTC 2 cut(s) 10, 71
HpaII CCGG 2 cut(s) 67, 330
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 4 cut(s) 97, 174, 208, 258
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 50, 213
Hpy8I GTNNAC 4 cut(s) 97, 174, 208, 258
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4V TGCA 6 cut(s) 128, 198, 327, 345, 408, 435
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 269, 272, 346
HpyF3I CTNAG 2 cut(s) 211, 380
Hsp92II CATG 2 cut(s) 65, 435
KspI CCGCGG 1 cut(s) 267
Kzo9I GATC 1 cut(s) 52
Lsp1109I GCAGC 3 cut(s) 256, 258, 447
MaeI CTAG 2 cut(s) 188, 396
MaeIII GTNAC 1 cut(s) 427
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 2 cut(s) 232, 412
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 4 cut(s) 67, 98, 209, 325
MspA1I CMGCKG 2 cut(s) 249, 266
MspI CCGG 2 cut(s) 67, 330
MspR9I CCNGG 3 cut(s) 68, 184, 450
MvaI CCWGG 2 cut(s) 184, 450
MvnI CGCG 1 cut(s) 266
MwoI GCNNNNNNNGC 4 cut(s) 161, 269, 272, 346
NciI CCSGG 1 cut(s) 68
NdeII GATC 1 cut(s) 52
NlaIII CATG 2 cut(s) 65, 435
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 1 cut(s) 435
PaeR7I CTCGAG 1 cut(s) 108
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 282
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 9 cut(s) 157, 248, 251, 265, 268, 271, 274, 437, 468
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 2 cut(s) 182, 448
PspGI CCWGG 2 cut(s) 182, 448
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 218
PspXI VCTCGAGB 1 cut(s) 108
RsaI GTAC 2 cut(s) 96, 173
RsaNI GTAC 2 cut(s) 95, 172
SacII CCGCGG 1 cut(s) 267
SatI GCNGC 9 cut(s) 156, 247, 250, 264, 267, 270, 273, 436, 467
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 68, 184, 450
SduI GDGCHC 1 cut(s) 115
SetI ASST 4 cut(s) 90, 140, 317, 440
Sfr274I CTCGAG 1 cut(s) 108
Sfr303I CCGCGG 1 cut(s) 267
SgrAI CRCCGGYG 1 cut(s) 329
SgrBI CCGCGG 1 cut(s) 267
SlaI CTCGAG 1 cut(s) 108
SmlI CTYRAG 2 cut(s) 108, 357
SmoI CTYRAG 2 cut(s) 108, 357
Sse9I AATT 2 cut(s) 232, 412
SsiI CCGC 7 cut(s) 156, 249, 264, 266, 272, 290, 333
SspMI CTAG 2 cut(s) 188, 396
StyD4I CCNGG 3 cut(s) 66, 182, 448
TaaI ACNGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 109
TasI AATT 2 cut(s) 232, 412
TatI WGTACW 2 cut(s) 94, 171
TauI GCSGC 5 cut(s) 158, 252, 266, 269, 275
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 2 cut(s) 154, 347
TseI GCWGC 4 cut(s) 246, 269, 435, 466
TspGWI ACGGA 1 cut(s) 240
TspRI CASTG 2 cut(s) 154, 347
Van91I CCANNNNNTGG 1 cut(s) 282
XapI RAATTY 2 cut(s) 232, 412
XceI RCATGY 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XhoI CTCGAG 1 cut(s) 108
XspI CTAG 2 cut(s) 188, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.