Rh6AG043200

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002121
Physical Location & Seq
Forward (+)
6364775 .. 6365212
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG043200.1

Sequence Viewer

Length: 438 bp
ATGGTTCCTGATCCCTCCCATGTCCGGGACTCACCACAAGACTACCTCAATGTACACAATGTGGCTCGAGCACGAGTTGGAGTTGCAAACATCAGGTGGGACAACACTGTTGCCGCCTACGCTCTGAAGTACACCAAGTCGAGGCTAGGGGATTGCAATCTCGTCCACTCAGGAGGGCCTTACGGAGAGAATTTAGCCAAAGGCAGCGGCTCGTTTACAGCCGCGGCTGCAGCCAATATGTGGGTGGCGGAGAAGCCTTACTACAACTACACCTCCAATGCTTGCACCGGCGGAAAGCAGTGCAGGCACTATACTCAAGTGGTGTGGGCAAAGTCTGTTAGGGTGGGGTGTGCTAGGCTTCAATGCAGGAATTCGTGGTGGTTTGTTACATGCAGCTATTATCCACCAGGCAACTACATCGGGCAGCGCCCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

145

Amino Acids

16.16

Weight (kDa)

9.41

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 16 - 133 1.6e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AccII CGCG 1 cut(s) 224
AciI CCGC 6 cut(s) 114, 207, 222, 224, 248, 291
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 2 cut(s) 190, 370
AcuI CTGAAG 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 61
AfaI GTAC 2 cut(s) 54, 131
AfiI CCNNNNNNNGG 4 cut(s) 24, 25, 141, 240
AgsI TTSAA 1 cut(s) 362
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 1 cut(s) 396
AluI AGCT 1 cut(s) 396
Alw21I GWGCWC 1 cut(s) 73
AlwI GGATC 1 cut(s) 5
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 5 cut(s) 204, 227, 230, 393, 424
ApoI RAATTY 2 cut(s) 190, 370
AspLEI GCGC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 66
BarI GAAGNNNNNNTAC 2 cut(s) 245, 277
BauI CACGAG 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 4 cut(s) 214, 216, 242, 405
BcgI CGANNNNNNTGC 2 cut(s) 400, 434
BciT130I CCWGG 1 cut(s) 408
BcnI CCSGG 1 cut(s) 26
BfaI CTAG 2 cut(s) 146, 354
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 430
BisI GCNGC 9 cut(s) 114, 205, 208, 222, 225, 228, 231, 394, 425
BlsI GCNGC 9 cut(s) 115, 206, 209, 223, 226, 229, 232, 395, 426
Bme1390I CCNGG 2 cut(s) 26, 408
BmeT110I CYCGRG 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 26, 408
BpuEI CTTGAG 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 26
BsaBI GATNNNNATC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 4 cut(s) 24, 25, 141, 240
Bse118I RCCGGY 1 cut(s) 287
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 222
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 4 cut(s) 24, 25, 141, 240
BseMII CTCAG 1 cut(s) 183
BseXI GCAGC 4 cut(s) 214, 216, 242, 405
BsgI GTGCAG 1 cut(s) 322
Bsh1236I CGCG 1 cut(s) 224
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 2 cut(s) 25, 288
BslFI GGGAC 2 cut(s) 41, 113
BslI CCNNNNNNNGG 4 cut(s) 24, 25, 141, 240
BsmFI GGGAC 2 cut(s) 41, 113
BsnI GGCC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 66
Bsp1286I GDGCHC 1 cut(s) 73
Bsp1407I TGTACA 1 cut(s) 52
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 6 cut(s) 114, 207, 222, 224, 248, 291
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 182
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 232
BspPI GGATC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 287
BsrGI TGTACA 1 cut(s) 52
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 10
BssSI CACGAG 1 cut(s) 72
Bst2BI CACGAG 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 283, 305
BstDEI CTNAG 1 cut(s) 169
BstDSI CCRYGG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 4 cut(s) 119, 227, 230, 304
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 2 cut(s) 24, 406
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 214, 216, 242, 405
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 105, 305
Cac8I GCNNGC 2 cut(s) 283, 305
CfoI GCGC 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 176
Cfr42I CCGCGG 1 cut(s) 225
Csp6I GTAC 2 cut(s) 53, 130
CspCI CAANNNNNGTGG 2 cut(s) 305, 340
CviAII CATG 2 cut(s) 20, 390
CviQI GTAC 2 cut(s) 53, 130
DdeI CTNAG 1 cut(s) 169
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 61
EciI GGCGGA 2 cut(s) 263, 306
Eco57I CTGAAG 1 cut(s) 146
Eco88I CYCGRG 1 cut(s) 66
EcoO109I RGGNCCY 1 cut(s) 176
EcoRI GAATTC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 406
FaeI CATG 2 cut(s) 23, 393
FaiI YATR 5 cut(s) 21, 239, 312, 391, 433
FaqI GGGAC 2 cut(s) 41, 113
FatI CATG 2 cut(s) 19, 389
Fnu4HI GCNGC 9 cut(s) 114, 205, 208, 222, 225, 228, 231, 394, 425
Fsp4HI GCNGC 9 cut(s) 114, 205, 208, 222, 225, 228, 231, 394, 425
FspBI CTAG 2 cut(s) 146, 354
GlaI GCGC 1 cut(s) 428
GluI GCNGC 9 cut(s) 114, 205, 208, 222, 225, 228, 231, 394, 425
HaeII RGCGCY 1 cut(s) 430
HaeIII GGCC 1 cut(s) 178
HapII CCGG 2 cut(s) 25, 288
HhaI GCGC 1 cut(s) 429
Hin1II CATG 2 cut(s) 23, 393
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HinfI GANTC 1 cut(s) 29
HpaII CCGG 2 cut(s) 25, 288
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 4 cut(s) 55, 132, 166, 216
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 2 cut(s) 8, 171
Hpy8I GTNNAC 4 cut(s) 55, 132, 166, 216
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 7 cut(s) 86, 156, 230, 285, 303, 366, 393
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 227, 230, 304
HpyF3I CTNAG 1 cut(s) 169
Hsp92II CATG 2 cut(s) 23, 393
HspAI GCGC 1 cut(s) 427
KspI CCGCGG 1 cut(s) 225
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 9 cut(s) 21, 38, 79, 156, 289, 301, 352, 393, 420
Lsp1109I GCAGC 4 cut(s) 214, 216, 242, 405
MaeI CTAG 2 cut(s) 146, 354
MaeIII GTNAC 1 cut(s) 385
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 2 cut(s) 190, 370
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 5 cut(s) 25, 56, 135, 167, 283
MspA1I CMGCKG 2 cut(s) 207, 224
MspI CCGG 2 cut(s) 25, 288
MspR9I CCNGG 2 cut(s) 26, 408
MvaI CCWGG 1 cut(s) 408
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 4 cut(s) 119, 227, 230, 304
NciI CCSGG 1 cut(s) 26
NdeII GATC 1 cut(s) 10
NlaIII CATG 2 cut(s) 23, 393
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 393
PaeR7I CTCGAG 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 240
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 9 cut(s) 115, 206, 209, 223, 226, 229, 232, 395, 426
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 176
PspXI VCTCGAGB 1 cut(s) 66
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 2 cut(s) 54, 131
RsaNI GTAC 2 cut(s) 53, 130
SacII CCGCGG 1 cut(s) 225
SatI GCNGC 9 cut(s) 114, 205, 208, 222, 225, 228, 231, 394, 425
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 26, 408
SduI GDGCHC 1 cut(s) 73
SetI ASST 4 cut(s) 48, 98, 275, 398
SfcI CTRYAG 1 cut(s) 228
Sfr274I CTCGAG 1 cut(s) 66
Sfr303I CCGCGG 1 cut(s) 225
SgrAI CRCCGGYG 1 cut(s) 287
SgrBI CCGCGG 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 66
SmlI CTYRAG 2 cut(s) 66, 315
SmoI CTYRAG 2 cut(s) 66, 315
Sse9I AATT 2 cut(s) 190, 370
SsiI CCGC 6 cut(s) 114, 207, 222, 224, 248, 291
SspMI CTAG 2 cut(s) 146, 354
StyD4I CCNGG 2 cut(s) 24, 406
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 2 cut(s) 67, 140
TasI AATT 2 cut(s) 190, 370
TatI WGTACW 2 cut(s) 52, 129
TauI GCSGC 4 cut(s) 116, 210, 224, 227
TscAI CASTG 2 cut(s) 112, 305
TseI GCWGC 5 cut(s) 204, 227, 230, 393, 424
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 2 cut(s) 112, 305
Van91I CCANNNNNTGG 1 cut(s) 240
XapI RAATTY 2 cut(s) 190, 370
XceI RCATGY 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XhoI CTCGAG 1 cut(s) 66
XspI CTAG 2 cut(s) 146, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.