Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0002121

Physical Location & Seq

Genomic Coordinates Reverse (-)

16557898 .. 16558371

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G152700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTTTGTGTTTTGTACTTCTTTGCCTCACGTCTCTGGTGCTTCATCCCTCCCATGCCCAAAACTCCCAGCAAGACTACCTCAATGCACACAATGTGGCACGTGAGCAAGTCGGCGTCCCGAACATCACGTGGGACAGCACCGTCGAGGCCTATGCTCAGAACTATGCCAACTCCAGAGCTGCAGATTGCAACCTGGTGCATTCAAATGGGACTTATGGTGAGAATTTGGCAGAGGGGAGTGGCTCATTTACAGGCACATCTGCTGTGAACTTGTGGGTGGCAGAGAAGCCTAACTATAACTACACCTCAAACTCTTGTGTTGGAGGGCAGCAGTGCCTGCATTATACTCAAGTAGTTTGGAAAAACTCTGTTAGGCTGGGGTGTGCTAGGGTTAAGTGCAGCAATGGGTTGTGGTTTGTGACTTGCAACTATGACCCTCCTGGCAACTATGTTGGGCAGCGTCCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

158

Amino Acids

17.25

Weight (kDa)

6.48

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50050 AT1G50050 AT1G50060
fragaria_vesca	FvH4_2g02850 FvH4_2g02921 FvH4_2g02940 FvH4_2g02950
malus_domestica	MD10G1112900.v1.1
prunus_persica	Prupe.8G152700_v2.0.a1
pyrus_communis	pycom10g09770
rosa_chinensis	RchiOBHm_Chr6g0247661 RchiOBHm_Chr6g0247731 RchiOBHm_Chr6g0247741
rosa_laevigata	RLG00000015183 RLG00000015184
rosa_multiflora	Rmu_sc0003092.1_g000034 Rmu_sc0004057.1_g000007 Rmu_sc0009569.1_g000001 Rmu_sc0009569.1_g000002 Rmu_sc0039728.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433280 Rroxscaffold_180G00433300 Rroxscaffold_180G00433310 Rroxscaffold_7G00213700 Rroxscaffold_7G00213710 Rroxscaffold_7G00213720
rosa_rugosa	Rorug05G0528100 Rorug05G0528200
rosa_samantha	Rh6AG043100 Rh6AG043200 Rh6AG043300 Rh6BG037100 Rh6BG037700 Rh6BG037900 Rh6CG036600 Rh6CG036700 Rh6DG033600 Rh6DG033700
rosa_wichuraiana	Rw6G003650 Rw6G003700 Rw6G003710 Rw6G003720 Rw6G003740 Rw6G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	226
AcvI	CACGTG	2 cut(s)	104, 132
AcyI	GRCGYC	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	207
AjiI	CACGTC	1 cut(s)	33
AjnI	CCWGG	2 cut(s)	195, 442
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	39
AlwNI	CAGNNNCTG	1 cut(s)	340
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	4 cut(s)	182, 331, 402, 460
ApoI	RAATTY	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	233
BbrPI	CACGTG	2 cut(s)	104, 132
BbvI	GCAGC	3 cut(s)	169, 343, 414
BcgI	CGANNNNNNTGC	2 cut(s)	137, 171
BciT130I	CCWGG	2 cut(s)	197, 444
BcoDI	GTCTC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	4 cut(s)	183, 332, 403, 461
BlsI	GCNGC	4 cut(s)	184, 333, 404, 462
Bme1390I	CCNGG	2 cut(s)	197, 444
BmgBI	CACGTC	1 cut(s)	33
BmrFI	CCNGG	2 cut(s)	197, 444
BpmI	CTGGAG	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	336
BsaAI	YACGTR	2 cut(s)	104, 132
BsaHI	GRCGYC	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	197, 444
BseGI	GGATG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	1 cut(s)	173
BseXI	GCAGC	3 cut(s)	169, 343, 414
BseYI	CCCAGC	2 cut(s)	69, 379
BsgI	GTGCAG	1 cut(s)	421
BshFI	GGCC	1 cut(s)	152
BslFI	GGGAC	3 cut(s)	104, 149, 226
BsmAI	GTCTC	1 cut(s)	39
BsmBI	CGTCTC	1 cut(s)	39
BsmFI	GGGAC	3 cut(s)	104, 149, 226
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	172
BspMAI	CTGCAG	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	197, 444
Bst4CI	ACNGT	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstBAI	YACGTR	2 cut(s)	104, 132
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	2 cut(s)	197, 444
BstSCI	CCNGG	2 cut(s)	195, 442
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	169, 343, 414
BsuRI	GGCC	1 cut(s)	152
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	46
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	341
CaiI	CAGNNNCTG	1 cut(s)	340
CseI	GACGC	2 cut(s)	106, 452
CsiI	ACCWGGT	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	1 cut(s)	56
CviJI	RGCY	6 cut(s)	5, 152, 182, 246, 292, 379
CviKI_1	RGCY	6 cut(s)	5, 152, 182, 246, 292, 379
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	1 cut(s)	159
DraIII	CACNNNGTG	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eco147I	AGGCCT	1 cut(s)	152
Eco72I	CACGTG	2 cut(s)	104, 132
EcoRII	CCWGG	2 cut(s)	195, 442
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	1 cut(s)	59
FaiI	YATR	8 cut(s)	57, 156, 168, 219, 300, 348, 435, 453
FaqI	GGGAC	3 cut(s)	104, 149, 226
FatI	CATG	1 cut(s)	55
Fnu4HI	GCNGC	4 cut(s)	183, 332, 403, 461
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	4 cut(s)	183, 332, 403, 461
FspBI	CTAG	1 cut(s)	390
GluI	GCNGC	4 cut(s)	183, 332, 403, 461
GsaI	CCCAGC	2 cut(s)	73, 383
GsuI	CTGGAG	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	2 cut(s)	106, 452
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	2 cut(s)	121, 177
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	3 cut(s)	32, 103, 131
HpyCH4V	TGCA	7 cut(s)	89, 185, 192, 202, 343, 402, 429
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	3 cut(s)	32, 103, 131
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	59
Lsp1109I	GCAGC	3 cut(s)	169, 343, 414
MabI	ACCWGGT	1 cut(s)	195
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	3 cut(s)	32, 103, 131
MaeIII	GTNAC	1 cut(s)	421
MluCI	AATT	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	8 cut(s)	38, 61, 92, 142, 229, 319, 320, 450
MseI	TTAA	2 cut(s)	396, 472
MslI	CAYNNNNRTG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	197, 444
Mva1269I	GAATGC	1 cut(s)	202
MvaI	CCWGG	2 cut(s)	197, 444
MwoI	GCNNNNNNNGC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	152
PctI	GAATGC	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	184, 333, 404, 462
PmaCI	CACGTG	2 cut(s)	104, 132
PmlI	CACGTG	2 cut(s)	104, 132
Ppu21I	YACGTR	2 cut(s)	104, 132
Psp6I	CCWGG	2 cut(s)	195, 442
PspCI	CACGTG	2 cut(s)	104, 132
PspFI	CCCAGC	2 cut(s)	69, 379
PspGI	CCWGG	2 cut(s)	195, 442
PstI	CTGCAG	1 cut(s)	187
PstNI	CAGNNNCTG	1 cut(s)	340
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	396, 472
SatI	GCNGC	4 cut(s)	183, 332, 403, 461
ScrFI	CCNGG	2 cut(s)	197, 444
SetI	ASST	7 cut(s)	35, 84, 106, 134, 184, 198, 311
SexAI	ACCWGGT	1 cut(s)	195
SfcI	CTRYAG	1 cut(s)	183
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	1 cut(s)	226
SseBI	AGGCCT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	195, 442
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	3 cut(s)	35, 106, 134
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	226
TatI	WGTACW	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	396, 472
Tru9I	TTAA	2 cut(s)	396, 472
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	4 cut(s)	182, 331, 402, 460
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	341
XapI	RAATTY	1 cut(s)	226
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.