Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003092.1

Orthogroup ID

OG0002121

Physical Location & Seq

Genomic Coordinates Reverse (-)

74260 .. 74703

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003092.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgggatttgcactagtccacatctcccttgcccaaaacaaccctcaggattacctcaacgcccacaatgccgctcgtgcccaggtcggagtcaagccattgacatggagcaactctctagtagcctacgcccagcaatacgcaagcaagagaattgcagactgcaaatcggagcattctaccggtccctacggtgagaacattgccgaagcctcgtacgcgataacgagctcgagagcaatggaattatgggtcaatgagaagccgagttacaactatcagttgaataaatgcgtcggaggccagtgcggtcattatactcgggtagtaatttggcggaattcggctcaggttgggtgcgctagggttagcaacagtgggtggtggttcgtcacttgcaactacaaccctcccggtaacattgttggggaaaggccgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

147

Amino Acids

16.31

Weight (kDa)

8.84

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50050 AT1G50050 AT1G50060
fragaria_vesca	FvH4_2g02850 FvH4_2g02921 FvH4_2g02940 FvH4_2g02950
malus_domestica	MD10G1112900.v1.1
prunus_persica	Prupe.8G152700_v2.0.a1
pyrus_communis	pycom10g09770
rosa_chinensis	RchiOBHm_Chr6g0247661 RchiOBHm_Chr6g0247731 RchiOBHm_Chr6g0247741
rosa_laevigata	RLG00000015183 RLG00000015184
rosa_multiflora	Rmu_sc0003092.1_g000034 Rmu_sc0004057.1_g000007 Rmu_sc0009569.1_g000001 Rmu_sc0009569.1_g000002 Rmu_sc0039728.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433280 Rroxscaffold_180G00433300 Rroxscaffold_180G00433310 Rroxscaffold_7G00213700 Rroxscaffold_7G00213710 Rroxscaffold_7G00213720
rosa_rugosa	Rorug05G0528100 Rorug05G0528200
rosa_samantha	Rh6AG043100 Rh6AG043200 Rh6AG043300 Rh6BG037100 Rh6BG037700 Rh6BG037900 Rh6CG036600 Rh6CG036700 Rh6DG033600 Rh6DG033700
rosa_wichuraiana	Rw6G003650 Rw6G003700 Rw6G003710 Rw6G003720 Rw6G003740 Rw6G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	74
AccII	CGCG	1 cut(s)	221
AciI	CCGC	3 cut(s)	72, 309, 337
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	1 cut(s)	218
AgeI	ACCGGT	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	286
AhlI	ACTAGT	1 cut(s)	13
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	231
AluI	AGCT	1 cut(s)	231
Alw21I	GWGCWC	1 cut(s)	233
Ama87I	CYCGRG	2 cut(s)	232, 321
AoxI	GGCC	2 cut(s)	301, 434
ApoI	RAATTY	1 cut(s)	340
AsiGI	ACCGGT	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	206
AvaI	CYCGRG	2 cut(s)	232, 321
AvaII	GGWCC	1 cut(s)	185
AxyI	CCTNAGG	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	233
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BauI	CACGAG	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	83
BcnI	CCSGG	1 cut(s)	414
BcuI	ACTAGT	1 cut(s)	13
BfaI	CTAG	3 cut(s)	14, 119, 363
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	83, 414
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	2 cut(s)	232, 321
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	83, 414
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	304
Bse21I	CCTNAGG	1 cut(s)	45
Bse3DI	GCAATG	2 cut(s)	201, 246
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	81
BseMI	GCAATG	2 cut(s)	201, 246
BseMII	CTCAG	2 cut(s)	59, 362
BseNI	ACTGG	1 cut(s)	304
BseSI	GKGCMC	1 cut(s)	82
BseYI	CCCAGC	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	221
BshFI	GGCC	2 cut(s)	303, 436
BshTI	ACCGGT	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	2 cut(s)	232, 321
BsiSI	CCGG	2 cut(s)	183, 414
BsiWI	CGTACG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	171
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	303, 436
BsoBI	CYCGRG	2 cut(s)	232, 321
Bsp1286I	GDGCHC	2 cut(s)	82, 233
BspACI	CCGC	3 cut(s)	72, 309, 337
BspANI	GGCC	2 cut(s)	303, 436
BspCNI	CTCAG	2 cut(s)	58, 361
BspFNI	CGCG	1 cut(s)	221
BspLI	GGNNCC	1 cut(s)	187
BsrBI	CCGCTC	1 cut(s)	74
BsrDI	GCAATG	2 cut(s)	201, 246
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	75
Bst2BI	CACGAG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	2 cut(s)	194, 377
BstC8I	GCNNGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	45, 348
BstFNI	CGCG	1 cut(s)	221
BstHHI	GCGC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 77, 218, 300
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	81, 412
BstSLI	GKGCMC	1 cut(s)	82
BstUI	CGCG	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	105
Bsu36I	CCTNAGG	1 cut(s)	45
BsuRI	GGCC	2 cut(s)	303, 436
BtsIMutI	CAGTG	2 cut(s)	311, 382
Cac8I	GCNNGC	1 cut(s)	145
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	1 cut(s)	217
CspAI	ACCGGT	1 cut(s)	182
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	8 cut(s)	97, 125, 212, 231, 265, 303, 347, 436
CviKI_1	RGCY	8 cut(s)	97, 125, 212, 231, 265, 303, 347, 436
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	45, 348
EciI	GGCGGA	1 cut(s)	352
Ecl136II	GAGCTC	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	185
Eco53kI	GAGCTC	1 cut(s)	231
Eco81I	CCTNAGG	1 cut(s)	45
Eco88I	CYCGRG	2 cut(s)	232, 321
EcoICRI	GAGCTC	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	233
FaeI	CATG	1 cut(s)	108
FaiI	YATR	3 cut(s)	106, 250, 318
FaqI	GGGAC	1 cut(s)	171
FatI	CATG	1 cut(s)	104
Fnu4HI	GCNGC	1 cut(s)	72
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	3 cut(s)	14, 119, 363
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	1 cut(s)	72
GsaI	CCCAGC	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	303, 436
HapII	CCGG	2 cut(s)	183, 414
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	108
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	2 cut(s)	183, 414
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	3 cut(s)	89, 172, 299
Hpy188III	TCNNGA	2 cut(s)	47, 234
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	299
HpyCH4III	ACNGT	2 cut(s)	194, 377
HpyCH4V	TGCA	4 cut(s)	11, 158, 165, 399
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 77, 218, 300
HpyF3I	CTNAG	2 cut(s)	45, 348
Hsp92II	CATG	1 cut(s)	108
HspAI	GCGC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	108, 172
LpnPI	CCDG	8 cut(s)	32, 68, 95, 146, 196, 317, 335, 427
MaeI	CTAG	3 cut(s)	14, 119, 363
MaeIII	GTNAC	3 cut(s)	269, 391, 416
MbiI	CCGCTC	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	82, 233
MluCI	AATT	4 cut(s)	153, 245, 330, 340
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	2 cut(s)	67, 277
MnlI	CCTC	5 cut(s)	54, 65, 223, 293, 420
MslI	CAYNNNNRTG	1 cut(s)	103
MspI	CCGG	2 cut(s)	183, 414
MspR9I	CCNGG	2 cut(s)	83, 414
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	83
MvnI	CGCG	1 cut(s)	221
MwoI	GCNNNNNNNGC	4 cut(s)	68, 77, 218, 300
NciI	CCSGG	1 cut(s)	414
NlaIII	CATG	1 cut(s)	108
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	232
PctI	GAATGC	1 cut(s)	175
Pfl23II	CGTACG	1 cut(s)	216
PinAI	ACCGGT	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	81
PspFI	CCCAGC	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	81
PspLI	CGTACG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	233
SatI	GCNGC	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	83, 414
SduI	GDGCHC	2 cut(s)	82, 233
SetI	ASST	4 cut(s)	57, 87, 233, 354
Sfr274I	CTCGAG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	103
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SpeI	ACTAGT	1 cut(s)	13
Sse9I	AATT	4 cut(s)	153, 245, 330, 340
SsiI	CCGC	3 cut(s)	72, 309, 337
SspMI	CTAG	3 cut(s)	14, 119, 363
SstI	GAGCTC	1 cut(s)	233
StyD4I	CCNGG	2 cut(s)	81, 412
TaaI	ACNGT	2 cut(s)	194, 377
TaqI	TCGA	1 cut(s)	233
TasI	AATT	4 cut(s)	153, 245, 330, 340
TauI	GCSGC	1 cut(s)	74
TscAI	CASTG	2 cut(s)	311, 382
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspRI	CASTG	2 cut(s)	311, 382
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	232
XspI	CTAG	3 cut(s)	14, 119, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.