Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002121

Physical Location & Seq

Genomic Coordinates Reverse (-)

12977433 .. 12977881

Gene Structure 449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCACTAGGTCAAGTTCATCCGTCTCATGCTCAAAACTCACAGCAAGACTTCCTCAACGCACACAACGCGGCGCGAGCGCAAATCTACGTGCCGGATATCGTGTGGGACAACTCCGTGTCGGCGTATGCTCAAAACTCCGCCAACTCGAGAATTGGTGACTGCAATTTGGTGCATTCAAATTCCAACGGGACTTACGGCAAGAACTTTGCGAAAGGGAGTGGCTCGTTCACGGGCGTGGCGGCTGTGACCTTGTGGGTGGCGGAGAAGCCTAACTACGATTACAACTCTAATTCTTGTGTGGGCAGCAATTTGGGGTGTGCTAGGGTTCAGTGCACCAACGGGTGGTGGTTTGTGACTTGCAACTATTCCCCACCTGGAAACTACGTTGGGCAACGTCCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

136

Amino Acids

14.61

Weight (kDa)

7.66

Isoelectric Point (pI)

22.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50050 AT1G50050 AT1G50060
fragaria_vesca	FvH4_2g02850 FvH4_2g02921 FvH4_2g02940 FvH4_2g02950
malus_domestica	MD10G1112900.v1.1
prunus_persica	Prupe.8G152700_v2.0.a1
pyrus_communis	pycom10g09770
rosa_chinensis	RchiOBHm_Chr6g0247661 RchiOBHm_Chr6g0247731 RchiOBHm_Chr6g0247741
rosa_laevigata	RLG00000015183 RLG00000015184
rosa_multiflora	Rmu_sc0003092.1_g000034 Rmu_sc0004057.1_g000007 Rmu_sc0009569.1_g000001 Rmu_sc0009569.1_g000002 Rmu_sc0039728.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433280 Rroxscaffold_180G00433300 Rroxscaffold_180G00433310 Rroxscaffold_7G00213700 Rroxscaffold_7G00213710 Rroxscaffold_7G00213720
rosa_rugosa	Rorug05G0528100 Rorug05G0528200
rosa_samantha	Rh6AG043100 Rh6AG043200 Rh6AG043300 Rh6BG037100 Rh6BG037700 Rh6BG037900 Rh6CG036600 Rh6CG036700 Rh6DG033600 Rh6DG033700
rosa_wichuraiana	Rw6G003650 Rw6G003700 Rw6G003710 Rw6G003720 Rw6G003740 Rw6G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccII	CGCG	2 cut(s)	71, 76
AciI	CCGC	4 cut(s)	71, 141, 242, 263
AcsI	RAATTY	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	236
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	30
Alw44I	GTGCAC	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	148
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	306
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	76, 82
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	148
BaeGI	GKGCMC	1 cut(s)	338
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	318
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	8, 324
BisI	GCNGC	3 cut(s)	72, 243, 307
BlsI	GCNGC	3 cut(s)	73, 244, 308
Bme1390I	CCNGG	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	91
Bsc4I	CCNNNNNNNGG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	1 cut(s)	345
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	1 cut(s)	318
Bsh1236I	CGCG	2 cut(s)	71, 76
BsiHKAI	GWGCWC	1 cut(s)	338
BsiHKCI	CYCGRG	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	2 cut(s)	122, 205
BslI	CCNNNNNNNGG	1 cut(s)	345
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	122, 205
BsmI	GAATGC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	338
BspACI	CCGC	4 cut(s)	71, 141, 242, 263
BspFNI	CGCG	2 cut(s)	71, 76
Bst2UI	CCWGG	1 cut(s)	378
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	19
BstFNI	CGCG	2 cut(s)	71, 76
BstHHI	GCGC	2 cut(s)	76, 82
BstMAI	GTCTC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 77
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	338
BstUI	CGCG	2 cut(s)	71, 76
BstV1I	GCAGC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	2 cut(s)	76, 82
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	3 cut(s)	225, 245, 271
CviKI_1	RGCY	3 cut(s)	225, 245, 271
EciI	GGCGGA	2 cut(s)	130, 278
Eco32I	GATATC	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	376
EcoRV	GATATC	1 cut(s)	100
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	1 cut(s)	32
FaiI	YATR	2 cut(s)	30, 129
FaqI	GGGAC	2 cut(s)	122, 205
FatI	CATG	1 cut(s)	28
Fnu4HI	GCNGC	3 cut(s)	72, 243, 307
FokI	GGATG	1 cut(s)	6
Fsp4HI	GCNGC	3 cut(s)	72, 243, 307
FspBI	CTAG	2 cut(s)	8, 324
GlaI	GCGC	2 cut(s)	75, 81
GluI	GCNGC	3 cut(s)	72, 243, 307
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	2 cut(s)	76, 82
Hin1II	CATG	1 cut(s)	32
Hin6I	GCGC	2 cut(s)	74, 80
HinP1I	GCGC	2 cut(s)	74, 80
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	231, 336
Hpy188III	TCNNGA	1 cut(s)	150
Hpy8I	GTNNAC	2 cut(s)	231, 336
HpyCH4IV	ACGT	3 cut(s)	90, 387, 397
HpyCH4V	TGCA	4 cut(s)	165, 175, 336, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 77
HpySE526I	ACGT	3 cut(s)	90, 387, 397
Hsp92II	CATG	1 cut(s)	32
HspAI	GCGC	2 cut(s)	74, 80
LpnPI	CCDG	3 cut(s)	108, 363, 390
Lsp1109I	GCAGC	1 cut(s)	318
MaeI	CTAG	2 cut(s)	8, 324
MaeII	ACGT	3 cut(s)	90, 387, 397
MaeIII	GTNAC	3 cut(s)	158, 247, 355
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	5 cut(s)	153, 166, 181, 292, 310
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	378
Mva1269I	GAATGC	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	2 cut(s)	71, 76
MwoI	GCNNNNNNNGC	2 cut(s)	68, 77
NlaIII	CATG	1 cut(s)	32
NmuCI	GTSAC	3 cut(s)	158, 247, 355
OliI	CACNNNNGTG	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	148
PctI	GAATGC	1 cut(s)	175
PflMI	CCANNNNNTGG	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	73, 244, 308
Ppu21I	YACGTR	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	3 cut(s)	72, 243, 307
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	6 cut(s)	13, 93, 254, 379, 390, 400
Sfr274I	CTCGAG	1 cut(s)	148
SlaI	CTCGAG	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	5 cut(s)	153, 166, 181, 292, 310
SsiI	CCGC	4 cut(s)	71, 141, 242, 263
SspMI	CTAG	2 cut(s)	8, 324
StyD4I	CCNGG	1 cut(s)	376
TaiI	ACGT	3 cut(s)	93, 390, 400
TaqI	TCGA	1 cut(s)	149
TasI	AATT	5 cut(s)	153, 166, 181, 292, 310
TauI	GCSGC	2 cut(s)	74, 245
TscAI	CASTG	1 cut(s)	338
TseFI	GTSAC	3 cut(s)	158, 247, 355
TseI	GCWGC	1 cut(s)	306
Tsp45I	GTSAC	3 cut(s)	158, 247, 355
TspDTI	ATGAA	1 cut(s)	8
TspGWI	ACGGA	2 cut(s)	12, 106
TspRI	CASTG	1 cut(s)	338
Van91I	CCANNNNNTGG	1 cut(s)	345
VneI	GTGCAC	1 cut(s)	334
XapI	RAATTY	1 cut(s)	181
XhoI	CTCGAG	1 cut(s)	148
XspI	CTAG	2 cut(s)	8, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.