FvH4_2g02950

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002121
Physical Location & Seq
Forward (+)
2297260 .. 2297739
480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02950.t1

Sequence Viewer

Length: 480 bp
ATGGCTTTATTTGTTGCATTTCTTTGTCTCATTGGGTTGGCAGCTGTTCATCCCTCACATGCTCAAAACTCACAACAAGACTACCTCAATGCACATAACACTGCTCGCGCCCATGTTGGGGTGGCAAACATCATATGGGACAGCACGGTCGCCGCTTACGCTCAGAACTACGCCAATTCGAGGATCGCAGACTGCAACCTCGTGCATTCCGGAGGGCCTTATGGCGAAAATTTGGCAAAAGGAAGTAGCTCAGCCTTGACAGGCACGGCTGCAGTGAACTTGTGGGTGGCCGAGAAGCCTTACTATAACTACACTTCCAATTCTTGCACTGGTGGACAACAGTGTCTGCACTATACTCAGGTGGTTTGGGCAAACTCCATTAGATTGGGGTGTGCTAGAGTCCAATGCACCAATACGTGGTGGTTTGTCACATGTAACTATGATCCCCCAGGCAACTACGTTGGACAACTTCCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

160

Amino Acids

17.27

Weight (kDa)

6.97

Isoelectric Point (pI)

32.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 29 - 147 2.5e-17 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 146, 342
AccB7I CCANNNNNTGG 1 cut(s) 417
AccII CGCG 1 cut(s) 108
AccIII TCCGGA 1 cut(s) 209
AciI CCGC 1 cut(s) 153
AclWI GGATC 2 cut(s) 191, 437
AcoI YGGCCR 1 cut(s) 288
AcsI RAATTY 1 cut(s) 229
AfiI CCNNNNNNNGG 4 cut(s) 117, 118, 180, 417
AflIII ACRYGT 1 cut(s) 431
AjnI CCWGG 1 cut(s) 448
AluBI AGCT 2 cut(s) 44, 249
AluI AGCT 2 cut(s) 44, 249
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 191, 437
AlwNI CAGNNNCTG 1 cut(s) 346
Aor13HI TCCGGA 1 cut(s) 209
AoxI GGCC 2 cut(s) 215, 288
ApeKI GCWGC 2 cut(s) 41, 269
ApoI RAATTY 1 cut(s) 229
AspLEI GCGC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 215
BauI CACGAG 1 cut(s) 200
BbvI GCAGC 2 cut(s) 53, 256
BceAI ACGGC 1 cut(s) 282
BciT130I CCWGG 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 3 cut(s) 42, 153, 270
BlpI GCTNAGC 1 cut(s) 250
BlsI GCNGC 3 cut(s) 43, 154, 271
Bme1390I CCNGG 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 448
BsaWI WCCGGW 1 cut(s) 209
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 118, 180, 417
Bse1I ACTGG 1 cut(s) 334
BseAI TCCGGA 1 cut(s) 209
BseBI CCWGG 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 4 cut(s) 117, 118, 180, 417
BseMII CTCAG 3 cut(s) 176, 264, 371
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 2 cut(s) 53, 256
BsgI GTGCAG 1 cut(s) 332
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 217, 290
BsiEI CGRYCG 1 cut(s) 150
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 4 cut(s) 117, 118, 180, 417
BsmAI GTCTC 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 2 cut(s) 217, 290
Bsp13I TCCGGA 1 cut(s) 209
Bsp143I GATC 2 cut(s) 183, 442
Bsp1720I GCTNAGC 1 cut(s) 250
BspACI CCGC 1 cut(s) 153
BspANI GGCC 2 cut(s) 217, 290
BspCNI CTCAG 3 cut(s) 175, 263, 370
BspEI TCCGGA 1 cut(s) 209
BspFNI CGCG 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 2 cut(s) 191, 437
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 2 cut(s) 183, 442
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 450
Bst4CI ACNGT 2 cut(s) 148, 342
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 162, 250, 357
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 110
BstKTI GATC 2 cut(s) 186, 445
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 183, 442
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 450
BstNSI RCATGY 2 cut(s) 62, 435
BstSCI CCNGG 1 cut(s) 448
BstSFI CTRYAG 1 cut(s) 270
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 53, 256
BstXI CCANNNNNNTGG 1 cut(s) 385
BsuRI GGCC 2 cut(s) 217, 290
BtsCI GGATG 1 cut(s) 49
BtsI GCAGTG 2 cut(s) 99, 279
BtsIMutI CAGTG 4 cut(s) 99, 279, 327, 347
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 1 cut(s) 110
Cfr13I GGNCC 1 cut(s) 215
CviAII CATG 3 cut(s) 59, 113, 432
CviJI RGCY 8 cut(s) 5, 44, 217, 249, 254, 269, 290, 298
CviKI_1 RGCY 8 cut(s) 5, 44, 217, 249, 254, 269, 290, 298
DdeI CTNAG 3 cut(s) 162, 250, 357
DpnI GATC 2 cut(s) 185, 444
DpnII GATC 2 cut(s) 183, 442
DrdI GACNNNNNNGTC 2 cut(s) 146, 342
DseDI GACNNNNNNGTC 2 cut(s) 146, 342
EaeI YGGCCR 1 cut(s) 288
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 448
FaeI CATG 3 cut(s) 62, 116, 435
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 58, 112, 431
FauNDI CATATG 1 cut(s) 134
Fnu4HI GCNGC 3 cut(s) 42, 153, 270
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 42, 153, 270
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 109
GluI GCNGC 3 cut(s) 42, 153, 270
HaeIII GGCC 2 cut(s) 217, 290
HapII CCGG 1 cut(s) 210
HhaI GCGC 1 cut(s) 110
Hin1II CATG 3 cut(s) 62, 116, 435
Hin6I GCGC 1 cut(s) 108
HinP1I GCGC 1 cut(s) 108
HinfI GANTC 1 cut(s) 399
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 2 cut(s) 277, 335
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 2 cut(s) 277, 335
HpyCH4III ACNGT 2 cut(s) 148, 342
HpyCH4IV ACGT 2 cut(s) 416, 459
HpyCH4V TGCA 8 cut(s) 17, 92, 195, 205, 272, 327, 349, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 3 cut(s) 162, 250, 357
HpySE526I ACGT 2 cut(s) 416, 459
Hsp92II CATG 3 cut(s) 62, 116, 435
HspAI GCGC 1 cut(s) 108
Kpn2I TCCGGA 1 cut(s) 209
Kzo9I GATC 2 cut(s) 183, 442
LpnPI CCDG 6 cut(s) 223, 246, 315, 344, 435, 462
Lsp1109I GCAGC 2 cut(s) 53, 256
MaeI CTAG 1 cut(s) 396
MaeII ACGT 2 cut(s) 416, 459
MaeIII GTNAC 2 cut(s) 427, 434
MalI GATC 2 cut(s) 185, 444
MboI GATC 2 cut(s) 183, 442
MluCI AATT 3 cut(s) 175, 229, 319
MlyI GAGTC 1 cut(s) 408
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 5 cut(s) 64, 95, 174, 206, 209
MroI TCCGGA 1 cut(s) 209
MseI TTAA 1 cut(s) 478
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 450
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 450
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeI CATATG 1 cut(s) 134
NdeII GATC 2 cut(s) 183, 442
NlaIII CATG 3 cut(s) 62, 116, 435
NmeAIII GCCGAG 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 2 cut(s) 62, 435
PciI ACATGT 1 cut(s) 431
PctI GAATGC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 417
PkrI GCNGC 3 cut(s) 43, 154, 271
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
Ppu21I YACGTR 1 cut(s) 417
PscI ACATGT 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 448
PspGI CCWGG 1 cut(s) 448
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 478
SatI GCNGC 3 cut(s) 42, 153, 270
Sau3AI GATC 2 cut(s) 183, 442
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 1 cut(s) 450
SetI ASST 7 cut(s) 46, 87, 201, 251, 363, 419, 462
SfcI CTRYAG 1 cut(s) 270
Sse9I AATT 3 cut(s) 175, 229, 319
SsiI CCGC 1 cut(s) 153
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 448
TaaI ACNGT 2 cut(s) 148, 342
TaiI ACGT 2 cut(s) 419, 462
TaqI TCGA 1 cut(s) 179
TasI AATT 3 cut(s) 175, 229, 319
TauI GCSGC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 478
Tru9I TTAA 1 cut(s) 478
TscAI CASTG 4 cut(s) 106, 279, 334, 347
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 2 cut(s) 41, 269
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 4 cut(s) 106, 279, 334, 347
Van91I CCANNNNNTGG 1 cut(s) 417
XapI RAATTY 1 cut(s) 229
XceI RCATGY 2 cut(s) 62, 435
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.