Rroxscaffold_180G00433310

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
OG0002121
Physical Location & Seq
Reverse (-)
147985 .. 148362
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_180G00433310.1

Sequence Viewer

Length: 378 bp
ATGGGCTTGACAACGGTACTGCTGGTTCAACCCTCCCATGCGCAAAATTCACAACAAGACTACGTCGATGCTCACAACGCGGCTTGTTTACAAGTTGGTGTACCAAATGTTACATGGGACGACACCGTTGCGGCCTATGCTCAATCCTACGCCAACTCAAGAATCAGGGACTGCAGTCTCGTGCATTCGCATGGGCCTTACGGTGAGAACTTGGCCTACGGCTATGGCAGCAGCTCGTTCACAAGCGCCGACGCTGAGAACTTGTGGCTTGCGGAGAAGCCTTACTACAACCACACCTCCAATTCCTGTGTTGGTGGACAGTGTCTGCACTATACTCAAGTGATTTGGCGCTACTCTATCAGGCTGTGGGTGTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

125

Amino Acids

13.88

Weight (kDa)

5.75

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 22 - 117 3.5e-09 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 42
AccII CGCG 1 cut(s) 80
AciI CCGC 3 cut(s) 80, 131, 272
AcsI RAATTY 1 cut(s) 46
AfaI GTAC 2 cut(s) 18, 102
AgsI TTSAA 1 cut(s) 29
AluBI AGCT 1 cut(s) 234
AluI AGCT 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 2 cut(s) 171, 325
AoxI GGCC 3 cut(s) 132, 194, 213
ApeKI GCWGC 2 cut(s) 228, 231
ApoI RAATTY 1 cut(s) 46
AspLEI GCGC 3 cut(s) 43, 248, 351
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 215
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
BauI CACGAG 1 cut(s) 179
BbvI GCAGC 2 cut(s) 240, 243
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 376
BfmI CTRYAG 1 cut(s) 172
BfoI RGCGCY 2 cut(s) 249, 352
BisI GCNGC 4 cut(s) 81, 132, 229, 232
BlsI GCNGC 4 cut(s) 82, 133, 230, 233
BmgT120I GGNCC 1 cut(s) 194
BmsI GCATC 1 cut(s) 58
BoxI GACNNNNGTC 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 142, 321
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
BseMII CTCAG 1 cut(s) 246
BseXI GCAGC 2 cut(s) 240, 243
BsgI GTGCAG 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 3 cut(s) 134, 196, 215
BslFI GGGAC 2 cut(s) 131, 182
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 2 cut(s) 131, 182
BsmI GAATGC 1 cut(s) 184
BsnI GGCC 3 cut(s) 134, 196, 215
BspACI CCGC 3 cut(s) 80, 131, 272
BspANI GGCC 3 cut(s) 134, 196, 215
BspCNI CTCAG 1 cut(s) 247
BspFNI CGCG 1 cut(s) 80
BspMAI CTGCAG 1 cut(s) 176
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst4CI ACNGT 4 cut(s) 16, 127, 203, 321
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 255
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 2 cut(s) 249, 352
BstHHI GCGC 3 cut(s) 43, 248, 351
BstMAI GTCTC 1 cut(s) 182
BstMWI GCNNNNNNNGC 3 cut(s) 77, 137, 228
BstPAI GACNNNNGTC 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 172
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 240, 243
BsuRI GGCC 3 cut(s) 134, 196, 215
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 2 cut(s) 171, 325
CfoI GCGC 3 cut(s) 43, 248, 351
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 17, 101
CviAII CATG 3 cut(s) 38, 114, 191
CviQI GTAC 2 cut(s) 17, 101
DdeI CTNAG 1 cut(s) 255
FaeI CATG 3 cut(s) 41, 117, 194
FaiI YATR 6 cut(s) 39, 115, 138, 192, 225, 333
FaqI GGGAC 2 cut(s) 131, 182
FatI CATG 3 cut(s) 37, 113, 190
Fnu4HI GCNGC 4 cut(s) 81, 132, 229, 232
Fsp4HI GCNGC 4 cut(s) 81, 132, 229, 232
FspBI CTAG 1 cut(s) 376
FspI TGCGCA 1 cut(s) 42
GlaI GCGC 3 cut(s) 42, 247, 350
GluI GCNGC 4 cut(s) 81, 132, 229, 232
HaeII RGCGCY 2 cut(s) 249, 352
HaeIII GGCC 3 cut(s) 134, 196, 215
HgaI GACGC 1 cut(s) 260
HhaI GCGC 3 cut(s) 43, 248, 351
Hin1II CATG 3 cut(s) 41, 117, 194
Hin6I GCGC 3 cut(s) 41, 246, 349
HinP1I GCGC 3 cut(s) 41, 246, 349
HinfI GANTC 1 cut(s) 162
HphI GGTGA 1 cut(s) 215
Hpy166II GTNNAC 4 cut(s) 89, 101, 240, 317
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 4 cut(s) 89, 101, 240, 317
Hpy99I CGWCG 2 cut(s) 68, 254
HpyCH4III ACNGT 4 cut(s) 16, 127, 203, 321
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 3 cut(s) 174, 184, 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 137, 228
HpyF3I CTNAG 1 cut(s) 255
HpySE526I ACGT 1 cut(s) 63
Hsp92II CATG 3 cut(s) 41, 117, 194
HspAI GCGC 3 cut(s) 41, 246, 349
LpnPI CCDG 4 cut(s) 8, 151, 319, 346
Lsp1109I GCAGC 2 cut(s) 240, 243
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 376
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 109
MluCI AATT 2 cut(s) 46, 301
MnlI CCTC 2 cut(s) 43, 307
MslI CAYNNNNRTG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 184
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 77, 137, 228
NlaIII CATG 3 cut(s) 41, 117, 194
NsbI TGCGCA 1 cut(s) 42
PctI GAATGC 1 cut(s) 184
PfeI GAWTC 1 cut(s) 162
PflFI GACNNNGTC 2 cut(s) 62, 321
PkrI GCNGC 4 cut(s) 82, 133, 230, 233
PshAI GACNNNNGTC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 194
PsrI GAACNNNNNNTAC 4 cut(s) 9, 41, 200, 232
PstI CTGCAG 1 cut(s) 176
PstNI CAGNNNCTG 2 cut(s) 171, 325
PsyI GACNNNGTC 2 cut(s) 62, 321
RsaI GTAC 2 cut(s) 18, 102
RsaNI GTAC 2 cut(s) 17, 101
RseI CAYNNNNRTG 1 cut(s) 189
SatI GCNGC 4 cut(s) 81, 132, 229, 232
Sau96I GGNCC 1 cut(s) 194
SetI ASST 3 cut(s) 66, 236, 299
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 189
SmlI CTYRAG 2 cut(s) 157, 336
SmoI CTYRAG 2 cut(s) 157, 336
Sse9I AATT 2 cut(s) 46, 301
SsiI CCGC 3 cut(s) 80, 131, 272
SspMI CTAG 1 cut(s) 376
TaaI ACNGT 4 cut(s) 16, 127, 203, 321
TaiI ACGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 66
TasI AATT 2 cut(s) 46, 301
TauI GCSGC 2 cut(s) 83, 134
TfiI GAWTC 1 cut(s) 162
TscAI CASTG 1 cut(s) 326
TseI GCWGC 2 cut(s) 228, 231
TspRI CASTG 1 cut(s) 326
Tth111I GACNNNGTC 2 cut(s) 62, 321
XapI RAATTY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XspI CTAG 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.