Rroxscaffold_7G00213700

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002121
Physical Location & Seq
Reverse (-)
64166261 .. 64168641
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00213700.1

Sequence Viewer

Length: 573 bp
ATGGCTCGTTTACGAGTTGGTGTACCAAACTTTACATGGGATGACACTATTTTGGCCTATGCTCAATGCTATGCCAATTCAAGAAGACTGCAATCTCGTGCATTTTTCGGCATGGGTCTTACGGTGAGAAGGTTGGCAATGGTTCCTCCCTCCTATGCCCAGAACTCACAACAAGACTACCTCAATGCGCACAATGCAGCTCGCACACAAGTCGGAGTGGCAAACATCATGTGGGACAGCACTGTTGCTGGCTACGCTCTGAACTACACCAAGTCAAGGATCGGGGATTGCAATCTCGTTCACTCAGGAGGGCCTTACGGCGAAAATTTAGCCAAAGGCAGCGGCTCATTCACGGCCACTGCTGCAGTGAACTTGTGGGTGGCGGAAAAGCCTTGCTACAACTACACTTCCAATGCTTGCACAGGCGGAAAGCAGTGCCTGCACTATACTCAAGTTGTGTGGGCAGAGTCTGTTAGGTTGGGGTGTGCTAGGCTTCAATGTAGCAATTTGTGGTGGTTTGTTACATGCAGCTATGATCCACCAGGCAACTACATCGGGGAGCATCCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

190

Amino Acids

21.03

Weight (kDa)

8.79

Isoelectric Point (pI)

45.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 61 - 178 1.3e-15 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 189
AciI CCGC 3 cut(s) 342, 383, 426
AclWI GGATC 2 cut(s) 287, 530
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 325
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 2 cut(s) 81, 497
AjnI CCWGG 1 cut(s) 541
AluBI AGCT 2 cut(s) 200, 531
AluI AGCT 2 cut(s) 200, 531
AlwI GGATC 2 cut(s) 287, 530
AlwNI CAGNNNCTG 2 cut(s) 439, 470
AoxI GGCC 3 cut(s) 54, 311, 354
ApeKI GCWGC 4 cut(s) 197, 339, 362, 528
ApoI RAATTY 1 cut(s) 325
AspLEI GCGC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 311
AsuHPI GGTGA 1 cut(s) 136
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 4 cut(s) 209, 349, 351, 540
BceAI ACGGC 2 cut(s) 334, 369
BcgI CGANNNNNNTGC 4 cut(s) 193, 227, 535, 569
BciT130I CCWGG 1 cut(s) 543
BfaI CTAG 1 cut(s) 489
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 5 cut(s) 198, 340, 343, 363, 529
BlsI GCNGC 5 cut(s) 199, 341, 344, 364, 530
Bme1390I CCNGG 1 cut(s) 543
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 435
BsaBI GATNNNNATC 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 1 cut(s) 543
BseGI GGATG 2 cut(s) 46, 562
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 318
BseXI GCAGC 4 cut(s) 209, 349, 351, 540
BsgI GTGCAG 1 cut(s) 425
BshFI GGCC 3 cut(s) 56, 313, 356
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 3 cut(s) 56, 313, 356
Bsp143I GATC 2 cut(s) 279, 535
BspACI CCGC 3 cut(s) 342, 383, 426
BspANI GGCC 3 cut(s) 56, 313, 356
BspCNI CTCAG 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 367
BspPI GGATC 2 cut(s) 287, 530
BsrDI GCAATG 1 cut(s) 144
BssMI GATC 2 cut(s) 279, 535
BssSI CACGAG 1 cut(s) 96
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 2 cut(s) 124, 244
BstAPI GCANNNNNTGC 1 cut(s) 439
BstC8I GCNNGC 4 cut(s) 202, 250, 418, 440
BstDEI CTNAG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 46, 562
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 2 cut(s) 282, 538
BstMBI GATC 2 cut(s) 279, 535
BstMWI GCNNNNNNNGC 4 cut(s) 194, 254, 362, 439
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 541
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 4 cut(s) 209, 349, 351, 540
BstV2I GAAGAC 1 cut(s) 91
BsuRI GGCC 3 cut(s) 56, 313, 356
BtsCI GGATG 2 cut(s) 46, 562
BtsI GCAGTG 3 cut(s) 357, 372, 440
BtsIMutI CAGTG 4 cut(s) 240, 357, 372, 440
Cac8I GCNNGC 4 cut(s) 202, 250, 418, 440
CaiI CAGNNNCTG 2 cut(s) 439, 470
CfoI GCGC 1 cut(s) 190
Cfr13I GGNCC 1 cut(s) 311
Csp6I GTAC 1 cut(s) 23
CspCI CAANNNNNGTGG 2 cut(s) 440, 475
CviAII CATG 4 cut(s) 36, 112, 229, 525
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 304
DpnI GATC 2 cut(s) 281, 537
DpnII GATC 2 cut(s) 279, 535
EaeI YGGCCR 1 cut(s) 354
EciI GGCGGA 2 cut(s) 398, 441
EcoO109I RGGNCCY 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 541
FaeI CATG 4 cut(s) 39, 115, 232, 528
FaqI GGGAC 1 cut(s) 248
FatI CATG 4 cut(s) 35, 111, 228, 524
Fnu4HI GCNGC 5 cut(s) 198, 340, 343, 363, 529
FokI GGATG 2 cut(s) 53, 549
Fsp4HI GCNGC 5 cut(s) 198, 340, 343, 363, 529
FspAI RTGCGCAY 1 cut(s) 189
FspBI CTAG 1 cut(s) 489
FspI TGCGCA 1 cut(s) 189
GlaI GCGC 1 cut(s) 189
GluI GCNGC 5 cut(s) 198, 340, 343, 363, 529
HaeIII GGCC 3 cut(s) 56, 313, 356
HhaI GCGC 1 cut(s) 190
Hin1II CATG 4 cut(s) 39, 115, 232, 528
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
HinfI GANTC 1 cut(s) 467
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 4 cut(s) 11, 23, 301, 370
Hpy188I TCNGA 2 cut(s) 215, 261
Hpy188III TCNNGA 2 cut(s) 81, 306
Hpy8I GTNNAC 4 cut(s) 11, 23, 301, 370
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 2 cut(s) 124, 244
HpyCH4V TGCA 8 cut(s) 91, 101, 197, 291, 365, 420, 442, 528
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 254, 362, 439
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 4 cut(s) 39, 115, 232, 528
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 2 cut(s) 279, 535
LmnI GCTCC 1 cut(s) 559
LpnPI CCDG 7 cut(s) 173, 234, 291, 408, 452, 528, 555
Lsp1109I GCAGC 4 cut(s) 209, 349, 351, 540
MaeI CTAG 1 cut(s) 489
MaeIII GTNAC 1 cut(s) 520
MalI GATC 2 cut(s) 281, 537
MboI GATC 2 cut(s) 279, 535
MboII GAAGA 1 cut(s) 96
MluCI AATT 3 cut(s) 76, 325, 505
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 4 cut(s) 156, 160, 191, 302
MspA1I CMGCKG 1 cut(s) 342
MspR9I CCNGG 1 cut(s) 543
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 4 cut(s) 194, 254, 362, 439
NdeII GATC 2 cut(s) 279, 535
NlaIII CATG 4 cut(s) 39, 115, 232, 528
NlaIV GGNNCC 1 cut(s) 144
NsbI TGCGCA 1 cut(s) 189
NspI RCATGY 1 cut(s) 528
PkrI GCNGC 5 cut(s) 199, 341, 344, 364, 530
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 541
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 311
PstI CTGCAG 1 cut(s) 367
PstNI CAGNNNCTG 2 cut(s) 439, 470
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SatI GCNGC 5 cut(s) 198, 340, 343, 363, 529
Sau3AI GATC 2 cut(s) 279, 535
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 1 cut(s) 543
SetI ASST 5 cut(s) 134, 183, 202, 479, 533
SfcI CTRYAG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 450
SmoI CTYRAG 1 cut(s) 450
Sse9I AATT 3 cut(s) 76, 325, 505
SsiI CCGC 3 cut(s) 342, 383, 426
SspMI CTAG 1 cut(s) 489
StyD4I CCNGG 1 cut(s) 541
TaaI ACNGT 2 cut(s) 124, 244
TasI AATT 3 cut(s) 76, 325, 505
TauI GCSGC 1 cut(s) 345
TscAI CASTG 4 cut(s) 247, 364, 372, 440
TseI GCWGC 4 cut(s) 197, 339, 362, 528
TspRI CASTG 4 cut(s) 247, 364, 372, 440
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 528
XcmI CCANNNNNNNNNTGG 1 cut(s) 33
XspI CTAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.