Rorug05G0528100

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002121
Physical Location & Seq
Reverse (-)
71742238 .. 71744745
2508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0528100.1

Sequence Viewer

Length: 789 bp
ATGGGTCGGTCCACTTTCTCCTCGGACGATATTGTAATAAAGTCTCAAAATGATAACAAACTGTACAGATTAATCAAGCTTGAGAATGGCCTCACTGCATTGCTCATTCATGACCCTGAGATATACTCACAAGGGTATATGTGGAACATATGCTCTTCATGGGGAGTACAAAGTTTCCAGTTGAAAATGAGATATGCTTTCATCGAGTACATGTGCTTTTCTCCTGATGCTAACCTCATTAGAGATGTCAGTATGAAGAATAAGACTGAAACAAACTCTGTTATTGAGCCGGCAGAGGGGATTGAGTCCATCAGATTGAGAGCATTAATAGATCTTTTTGATGAAATTATAGACGAACCATTTTATGATCAACTAAGGACGAAGGAGCAGCTGGGATATGTTCAGTGTGACTGGAAGGTGATATCCGGTGTTTTTGTCTTTTATTTCATAGTTCAGTCATCGGAGTACAACCCAATTTACTTGCAGCGGAGAGTTGACAACTTTATGAATGGTCTGGAAGACATTGATTATCCGGGTAAAAGGTATACATTTGACTATGCAAAGAGGGTGGCAGAAGAGCTCAGCAGTCTACAGAAGGAGGATGTTGTCAACTTTTACAAGACGTACTTGCAACAATCATCTCCCAAGCATCAGAGACTTGCCATTCGTGTTTGGGGTTGCAAAACTGACTTGAAAGAAGCTGCAGAATCGCGACGGGAGTCTGTGCAGGTCATTGAAGACCTTGAAGCGTTTAAGATGTCATCTGTGTTCTATCCTAACGGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

262

Amino Acids

30.68

Weight (kDa)

5.09

Isoelectric Point (pI)

69.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PqqF-like_C_4 PF22456 112 - 172 4.4e-13 PQQ synthase PqqF-like, C-terminal lobe domain 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 718
AccI GTMKAC 2 cut(s) 545, 589
AccII CGCG 1 cut(s) 712
AciI CCGC 1 cut(s) 487
AfaI GTAC 5 cut(s) 65, 168, 209, 467, 626
AfiI CCNNNNNNNGG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 210
AgsI TTSAA 4 cut(s) 184, 694, 737, 746
AluBI AGCT 4 cut(s) 79, 391, 580, 701
AluI AGCT 4 cut(s) 79, 391, 580, 701
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 2 cut(s) 48, 649
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 388, 484, 701
ArsI GACNNNNNNTTYG 2 cut(s) 648, 680
AseI ATTAAT 2 cut(s) 71, 326
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 534
AsuHPI GGTGA 1 cut(s) 430
AvaII GGWCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 582
BbsI GAAGAC 2 cut(s) 525, 744
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 3 cut(s) 400, 496, 688
BccI CCATC 1 cut(s) 317
BclI TGATCA 1 cut(s) 367
BcnI CCSGG 1 cut(s) 534
BcoDI GTCTC 2 cut(s) 48, 649
BfmI CTRYAG 2 cut(s) 590, 702
BfuAI ACCTGC 1 cut(s) 718
BglII AGATCT 1 cut(s) 331
BisI GCNGC 3 cut(s) 389, 485, 702
BlpI GCTNAGC 1 cut(s) 581
BlsI GCNGC 3 cut(s) 390, 486, 703
Bme1390I CCNGG 1 cut(s) 534
Bme18I GGWCC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 534
BmsI GCATC 2 cut(s) 217, 658
BoxI GACNNNNGTC 1 cut(s) 718
BpiI GAAGAC 2 cut(s) 525, 744
BplI GAGNNNNNCTC 2 cut(s) 110, 142
Bpu1102I GCTNAGC 1 cut(s) 581
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 2 cut(s) 178, 416
Bse3DI GCAATG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 607
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMI GCAATG 1 cut(s) 98
BseMII CTCAG 2 cut(s) 108, 595
BseNI ACTGG 2 cut(s) 178, 416
BseRI GAGGAG 1 cut(s) 10
BseXI GCAGC 3 cut(s) 400, 496, 688
BseYI CCCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 746
Bsh1236I CGCG 1 cut(s) 712
BshFI GGCC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 3 cut(s) 290, 426, 533
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 2 cut(s) 48, 649
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 582
Bsp1407I TGTACA 1 cut(s) 63
Bsp143I GATC 2 cut(s) 331, 367
Bsp1720I GCTNAGC 1 cut(s) 581
Bsp68I TCGCGA 1 cut(s) 712
BspACI CCGC 1 cut(s) 487
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 2 cut(s) 109, 594
BspFNI CGCG 1 cut(s) 712
BspHI TCATGA 1 cut(s) 109
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 718
BspQI GCTCTTC 2 cut(s) 160, 570
BsrDI GCAATG 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 289
BsrGI TGTACA 1 cut(s) 63
BsrI ACTGG 2 cut(s) 178, 416
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 331, 367
BssNAI GTATAC 1 cut(s) 546
Bst1107I GTATAC 1 cut(s) 546
Bst4CI ACNGT 2 cut(s) 63, 782
Bst6I CTCTTC 2 cut(s) 160, 570
BstAUI TGTACA 1 cut(s) 63
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 3 cut(s) 117, 374, 581
BstF5I GGATG 1 cut(s) 607
BstFNI CGCG 1 cut(s) 712
BstKTI GATC 2 cut(s) 334, 370
BstMAI GTCTC 2 cut(s) 48, 649
BstMBI GATC 2 cut(s) 331, 367
BstNSI RCATGY 1 cut(s) 214
BstPAI GACNNNNGTC 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 532
BstSFI CTRYAG 2 cut(s) 590, 702
BstUI CGCG 1 cut(s) 712
BstV1I GCAGC 3 cut(s) 400, 496, 688
BstV2I GAAGAC 2 cut(s) 525, 744
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BstZ17I GTATAC 1 cut(s) 546
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 607
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 93, 410
BtuMI TCGCGA 1 cut(s) 712
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 1 cut(s) 291
CciI TCATGA 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 9
Csp6I GTAC 5 cut(s) 64, 167, 208, 466, 625
CspCI CAANNNNNGTGG 2 cut(s) 549, 584
CviAII CATG 3 cut(s) 110, 159, 211
CviJI RGCY 6 cut(s) 79, 90, 289, 391, 580, 701
CviKI_1 RGCY 6 cut(s) 79, 90, 289, 391, 580, 701
CviQI GTAC 5 cut(s) 64, 167, 208, 466, 625
DdeI CTNAG 3 cut(s) 117, 374, 581
DpnI GATC 2 cut(s) 333, 369
DpnII GATC 2 cut(s) 331, 367
Eam1104I CTCTTC 2 cut(s) 160, 570
EarI CTCTTC 2 cut(s) 160, 570
Ecl136II GAGCTC 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 582
Eco32I GATATC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 9
Eco53kI GAGCTC 1 cut(s) 580
EcoICRI GAGCTC 1 cut(s) 580
EcoRV GATATC 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 582
FaeI CATG 3 cut(s) 113, 162, 214
FalI AAGNNNNNCTT 2 cut(s) 611, 643
FatI CATG 3 cut(s) 109, 158, 210
FauNDI CATATG 1 cut(s) 149
FbaI TGATCA 1 cut(s) 367
FblI GTMKAC 2 cut(s) 545, 589
Fnu4HI GCNGC 3 cut(s) 389, 485, 702
FokI GGATG 1 cut(s) 614
FriOI GRGCYC 1 cut(s) 582
Fsp4HI GCNGC 3 cut(s) 389, 485, 702
GluI GCNGC 3 cut(s) 389, 485, 702
GsaI CCCAGC 1 cut(s) 395
HaeIII GGCC 1 cut(s) 90
HapII CCGG 3 cut(s) 290, 426, 533
Hin1II CATG 3 cut(s) 113, 162, 214
HincII GTYRAC 2 cut(s) 496, 610
HindII GTYRAC 2 cut(s) 496, 610
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 3 cut(s) 305, 707, 719
HpaII CCGG 3 cut(s) 290, 426, 533
HphI GGTGA 1 cut(s) 430
Hpy166II GTNNAC 5 cut(s) 12, 496, 546, 590, 610
Hpy188I TCNGA 4 cut(s) 25, 314, 463, 654
Hpy188III TCNNGA 4 cut(s) 110, 224, 515, 711
Hpy8I GTNNAC 5 cut(s) 12, 496, 546, 590, 610
Hpy99I CGWCG 1 cut(s) 717
HpyAV CCTTC 3 cut(s) 376, 409, 589
HpyCH4III ACNGT 2 cut(s) 63, 782
HpyCH4IV ACGT 1 cut(s) 623
HpyCH4V TGCA 7 cut(s) 98, 484, 560, 631, 681, 704, 727
HpyF3I CTNAG 3 cut(s) 117, 374, 581
HpySE526I ACGT 1 cut(s) 623
Hsp92II CATG 3 cut(s) 113, 162, 214
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 367
Kzo9I GATC 2 cut(s) 331, 367
LguI GCTCTTC 2 cut(s) 160, 570
LmnI GCTCC 1 cut(s) 385
Lsp1109I GCAGC 3 cut(s) 400, 496, 688
LweI GCATC 2 cut(s) 217, 658
MaeII ACGT 1 cut(s) 623
MaeIII GTNAC 1 cut(s) 407
MalI GATC 2 cut(s) 333, 369
MboI GATC 2 cut(s) 331, 367
MboII GAAGA 5 cut(s) 147, 268, 530, 587, 749
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 2 cut(s) 345, 474
MlyI GAGTC 2 cut(s) 314, 728
MnlI CCTC 6 cut(s) 31, 101, 245, 289, 558, 592
MroNI GCCGGC 1 cut(s) 289
MseI TTAA 3 cut(s) 71, 326, 753
MspA1I CMGCKG 2 cut(s) 391, 487
MspI CCGG 3 cut(s) 290, 426, 533
MspR9I CCNGG 1 cut(s) 534
MvnI CGCG 1 cut(s) 712
NaeI GCCGGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 534
NdeI CATATG 1 cut(s) 149
NdeII GATC 2 cut(s) 331, 367
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 3 cut(s) 113, 162, 214
NmuCI GTSAC 1 cut(s) 407
NruI TCGCGA 1 cut(s) 712
NspI RCATGY 1 cut(s) 214
PagI TCATGA 1 cut(s) 109
PciI ACATGT 1 cut(s) 210
PciSI GCTCTTC 2 cut(s) 160, 570
PdiI GCCGGC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 707
PkrI GCNGC 3 cut(s) 390, 486, 703
PleI GAGTC 2 cut(s) 313, 727
PpsI GAGTC 2 cut(s) 313, 727
PscI ACATGT 1 cut(s) 210
PshAI GACNNNNGTC 1 cut(s) 718
PshBI ATTAAT 2 cut(s) 71, 326
Psp124BI GAGCTC 1 cut(s) 582
PspFI CCCAGC 1 cut(s) 391
PspPI GGNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 1 cut(s) 331
PvuII CAGCTG 1 cut(s) 391
RruI TCGCGA 1 cut(s) 712
RsaI GTAC 5 cut(s) 65, 168, 209, 467, 626
RsaNI GTAC 5 cut(s) 64, 167, 208, 466, 625
SacI GAGCTC 1 cut(s) 582
SapI GCTCTTC 2 cut(s) 160, 570
SaqAI TTAA 3 cut(s) 71, 326, 753
SatI GCNGC 3 cut(s) 389, 485, 702
Sau3AI GATC 2 cut(s) 331, 367
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 2 cut(s) 314, 728
ScrFI CCNGG 1 cut(s) 534
SduI GDGCHC 1 cut(s) 582
SfaNI GCATC 2 cut(s) 217, 658
SfcI CTRYAG 2 cut(s) 590, 702
SinI GGWCC 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
Sse9I AATT 2 cut(s) 345, 474
SsiI CCGC 1 cut(s) 487
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 1 cut(s) 532
TaaI ACNGT 2 cut(s) 63, 782
TaiI ACGT 1 cut(s) 626
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 345, 474
TatI WGTACW 4 cut(s) 63, 166, 207, 465
TfiI GAWTC 1 cut(s) 707
Tru1I TTAA 3 cut(s) 71, 326, 753
Tru9I TTAA 3 cut(s) 71, 326, 753
TscAI CASTG 2 cut(s) 100, 410
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 3 cut(s) 388, 484, 701
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 7 cut(s) 98, 147, 190, 269, 357, 436, 521
TspRI CASTG 2 cut(s) 100, 410
VpaK11BI GGWCC 1 cut(s) 9
VspI ATTAAT 2 cut(s) 71, 326
XceI RCATGY 1 cut(s) 214
XmiI GTMKAC 2 cut(s) 545, 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.