Rh6AG043300

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002121
Physical Location & Seq
Forward (+)
6367874 .. 6368816
943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG043300.1

Sequence Viewer

Length: 477 bp
ATGGCTCTGGTTCTTTTACTTCTCTATGTGATAGGGTTGGCAATGGTTCCTCCCTCCTATGCCCAGAATTCACAACAAGACTACCTCAATGCACACAATGCGGCTCGCACACAAGTAGGAGTGGCAAACATCATGTGGGACAGCACTGTTGCTGCCTACGCTCTGAACTACACCAAGTCAAGGATCGGGGATTGTAATCTCGTCCACTCAGGAGGGCCTTACGGCGAAAATTTAGCCAAAGGCAGCGGCTCATTCACGGCCACTGCTGCAGTGAATTTGTGGGTGGCGGAAAAGCCTTACTACAACTACACTTCCAATGCTTGCACCGGCGGAAAGCAGTGCCTGCACTATACTCAAGTTGTGTGGGCAGAGTCTGTTAGGTTGGGGTGTGCTAGGCTTCAATGTAGCAATTTGTGGTGGTTTGTTACATGCAGCTATGATCCACCAGGCAACTACATCGGGGAGCATCCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

158

Amino Acids

17.31

Weight (kDa)

6.87

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 29 - 146 1.8e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 101, 246, 287, 330
AclWI GGATC 2 cut(s) 191, 434
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 3 cut(s) 67, 229, 274
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 1 cut(s) 445
AluBI AGCT 1 cut(s) 435
AluI AGCT 1 cut(s) 435
AlwI GGATC 2 cut(s) 191, 434
AlwNI CAGNNNCTG 2 cut(s) 343, 374
AoxI GGCC 2 cut(s) 215, 258
ApeKI GCWGC 4 cut(s) 152, 243, 266, 432
ApoI RAATTY 3 cut(s) 67, 229, 274
AspS9I GGNCC 1 cut(s) 215
BbvI GCAGC 4 cut(s) 139, 253, 255, 444
BceAI ACGGC 2 cut(s) 238, 273
BcgI CGANNNNNNTGC 2 cut(s) 439, 473
BciT130I CCWGG 1 cut(s) 447
BfaI CTAG 1 cut(s) 393
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
BlsI GCNGC 6 cut(s) 103, 154, 245, 248, 268, 434
Bme1390I CCNGG 1 cut(s) 447
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 447
BpuEI CTTGAG 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse118I RCCGGY 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 447
BseGI GGATG 1 cut(s) 466
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 4 cut(s) 139, 253, 255, 444
BsgI GTGCAG 1 cut(s) 329
BshFI GGCC 2 cut(s) 217, 260
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 2 cut(s) 217, 260
Bsp143I GATC 2 cut(s) 183, 439
BspACI CCGC 4 cut(s) 101, 246, 287, 330
BspANI GGCC 2 cut(s) 217, 260
BspCNI CTCAG 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 48
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 2 cut(s) 191, 434
BsrDI GCAATG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 326
BssMI GATC 2 cut(s) 183, 439
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 1 cut(s) 148
BstAPI GCANNNNNTGC 2 cut(s) 98, 343
BstC8I GCNNGC 3 cut(s) 106, 322, 344
BstDEI CTNAG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 2 cut(s) 186, 442
BstMBI GATC 2 cut(s) 183, 439
BstMWI GCNNNNNNNGC 4 cut(s) 98, 158, 266, 343
BstNI CCWGG 1 cut(s) 447
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 4 cut(s) 139, 253, 255, 444
BsuRI GGCC 2 cut(s) 217, 260
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 3 cut(s) 261, 276, 344
BtsIMutI CAGTG 4 cut(s) 144, 261, 276, 344
Cac8I GCNNGC 3 cut(s) 106, 322, 344
CaiI CAGNNNCTG 2 cut(s) 343, 374
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 344, 379
CviAII CATG 2 cut(s) 133, 429
CviJI RGCY 9 cut(s) 5, 104, 217, 236, 249, 260, 295, 397, 435
CviKI_1 RGCY 9 cut(s) 5, 104, 217, 236, 249, 260, 295, 397, 435
DdeI CTNAG 1 cut(s) 208
DpnI GATC 2 cut(s) 185, 441
DpnII GATC 2 cut(s) 183, 439
EaeI YGGCCR 1 cut(s) 258
EciI GGCGGA 2 cut(s) 302, 345
EcoO109I RGGNCCY 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 445
FaeI CATG 2 cut(s) 136, 432
FaiI YATR 7 cut(s) 27, 60, 134, 351, 430, 438, 472
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 132, 428
Fnu4HI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
FokI GGATG 1 cut(s) 453
Fsp4HI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
FspBI CTAG 1 cut(s) 393
GluI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
HaeIII GGCC 2 cut(s) 217, 260
HapII CCGG 1 cut(s) 327
Hin1II CATG 2 cut(s) 136, 432
HinfI GANTC 1 cut(s) 371
HpaII CCGG 1 cut(s) 327
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 210
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 5 cut(s) 92, 269, 324, 346, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 158, 266, 343
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 2 cut(s) 136, 432
Kzo9I GATC 2 cut(s) 183, 439
LmnI GCTCC 1 cut(s) 463
LpnPI CCDG 6 cut(s) 77, 195, 340, 356, 432, 459
Lsp1109I GCAGC 4 cut(s) 139, 253, 255, 444
MaeI CTAG 1 cut(s) 393
MaeIII GTNAC 1 cut(s) 424
MalI GATC 2 cut(s) 185, 441
MboI GATC 2 cut(s) 183, 439
MluCI AATT 4 cut(s) 67, 229, 274, 409
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 4 cut(s) 60, 64, 95, 206
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 4 cut(s) 98, 158, 266, 343
NdeII GATC 2 cut(s) 183, 439
NlaIII CATG 2 cut(s) 136, 432
NlaIV GGNNCC 1 cut(s) 48
NspI RCATGY 1 cut(s) 432
PkrI GCNGC 6 cut(s) 103, 154, 245, 248, 268, 434
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 215
PstI CTGCAG 1 cut(s) 271
PstNI CAGNNNCTG 2 cut(s) 343, 374
SatI GCNGC 6 cut(s) 102, 153, 244, 247, 267, 433
Sau3AI GATC 2 cut(s) 183, 439
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 447
SetI ASST 3 cut(s) 87, 383, 437
SfcI CTRYAG 1 cut(s) 267
SgrAI CRCCGGYG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
Sse9I AATT 4 cut(s) 67, 229, 274, 409
SsiI CCGC 4 cut(s) 101, 246, 287, 330
SspMI CTAG 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 148
TasI AATT 4 cut(s) 67, 229, 274, 409
TauI GCSGC 2 cut(s) 104, 249
TscAI CASTG 4 cut(s) 151, 268, 276, 344
TseI GCWGC 4 cut(s) 152, 243, 266, 432
TspRI CASTG 4 cut(s) 151, 268, 276, 344
XapI RAATTY 3 cut(s) 67, 229, 274
XceI RCATGY 1 cut(s) 432
XspI CTAG 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.