Rh6BG037100

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002121
Physical Location & Seq
Forward (+)
6201840 .. 6202190
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG037100.1

Sequence Viewer

Length: 351 bp
ATGGGATTTGCACTAGTCCACATCTCCCTTGCCCAAAACAACCCTCAGGATTACCTCAACACCCACAATGCCGCTCGTGCCCAGGTCGGAGTCAAGCCATTGACATGGAGCAACTCTCTAGTAGCCTACGCCCAGCAATACGCAAGCAAGAGAATTGCAGACTGCAAATCGGAGCATTCTACCGGTCCCTACGGTGAGAACATTGCCGAAGCCTCGTACGCGATAACGAGCTCGAGAGCAATGGAATTATGGGTCAATGAGAAGCCGAGTTACAACTATCAGTTGAATAAATGCGTCGGAGGCCAGTGTGGTCATTATACTCGGGTAGTAATTTGGCGGAATTCGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

116

Amino Acids

12.88

Weight (kDa)

8.83

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 19 - 110 1.7e-11 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 221
AciI CCGC 2 cut(s) 72, 337
AcsI RAATTY 1 cut(s) 340
AfaI GTAC 1 cut(s) 218
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 1 cut(s) 286
AhlI ACTAGT 1 cut(s) 13
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 233
Ama87I CYCGRG 2 cut(s) 232, 321
AoxI GGCC 1 cut(s) 301
ApoI RAATTY 1 cut(s) 340
AsiGI ACCGGT 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 206
AvaI CYCGRG 2 cut(s) 232, 321
AvaII GGWCC 1 cut(s) 185
AxyI CCTNAGG 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 233
BarI GAAGNNNNNNTAC 2 cut(s) 254, 286
BauI CACGAG 1 cut(s) 75
Bbv12I GWGCWC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 83
BcuI ACTAGT 1 cut(s) 13
BfaI CTAG 2 cut(s) 14, 119
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 185
BmeT110I CYCGRG 2 cut(s) 232, 321
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 182
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 304
Bse21I CCTNAGG 1 cut(s) 45
Bse3DI GCAATG 2 cut(s) 201, 246
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 81
BseMI GCAATG 2 cut(s) 201, 246
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 82
BseYI CCCAGC 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 303
BshTI ACCGGT 1 cut(s) 182
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 2 cut(s) 232, 321
BsiSI CCGG 1 cut(s) 183
BsiWI CGTACG 1 cut(s) 216
BslFI GGGAC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 303
BsoBI CYCGRG 2 cut(s) 232, 321
Bsp1286I GDGCHC 2 cut(s) 82, 233
BspACI CCGC 2 cut(s) 72, 337
BspANI GGCC 1 cut(s) 303
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 187
BsrBI CCGCTC 1 cut(s) 74
BsrDI GCAATG 2 cut(s) 201, 246
BsrFI RCCGGY 1 cut(s) 182
BsrI ACTGG 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 81
BssSI CACGAG 1 cut(s) 75
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 45, 348
BstFNI CGCG 1 cut(s) 221
BstMWI GCNNNNNNNGC 3 cut(s) 77, 218, 300
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 82
BstUI CGCG 1 cut(s) 221
BstXI CCANNNNNNTGG 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 45
BsuRI GGCC 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 217
CspAI ACCGGT 1 cut(s) 182
CviAII CATG 1 cut(s) 105
CviJI RGCY 7 cut(s) 97, 125, 212, 231, 265, 303, 347
CviKI_1 RGCY 7 cut(s) 97, 125, 212, 231, 265, 303, 347
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 2 cut(s) 45, 348
Ecl136II GAGCTC 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 231
Eco81I CCTNAGG 1 cut(s) 45
Eco88I CYCGRG 2 cut(s) 232, 321
EcoICRI GAGCTC 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 340
EcoRII CCWGG 1 cut(s) 81
EcoT38I GRGCYC 1 cut(s) 233
FaeI CATG 1 cut(s) 108
FaiI YATR 3 cut(s) 106, 250, 318
FaqI GGGAC 1 cut(s) 171
FatI CATG 1 cut(s) 104
Fnu4HI GCNGC 1 cut(s) 72
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 14, 119
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 136
HaeIII GGCC 1 cut(s) 303
HapII CCGG 1 cut(s) 183
HgaI GACGC 1 cut(s) 283
Hin1II CATG 1 cut(s) 108
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 89, 172, 299
Hpy188III TCNNGA 2 cut(s) 47, 234
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 299
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 3 cut(s) 11, 158, 165
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 218, 300
HpyF3I CTNAG 2 cut(s) 45, 348
Hsp92II CATG 1 cut(s) 108
LmnI GCTCC 2 cut(s) 108, 172
LpnPI CCDG 6 cut(s) 32, 68, 95, 146, 196, 317
MaeI CTAG 2 cut(s) 14, 119
MaeIII GTNAC 1 cut(s) 269
MbiI CCGCTC 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 82, 233
MluCI AATT 4 cut(s) 153, 245, 330, 340
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 2 cut(s) 67, 277
MnlI CCTC 4 cut(s) 54, 65, 223, 293
MslI CAYNNNNRTG 1 cut(s) 103
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 83
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 77, 218, 300
NlaIII CATG 1 cut(s) 108
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 291
PaeR7I CTCGAG 1 cut(s) 232
PctI GAATGC 1 cut(s) 175
Pfl23II CGTACG 1 cut(s) 216
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp124BI GAGCTC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 132
PspGI CCWGG 1 cut(s) 81
PspLI CGTACG 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 185
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 103
SacI GAGCTC 1 cut(s) 233
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 2 cut(s) 82, 233
SetI ASST 3 cut(s) 57, 87, 233
Sfr274I CTCGAG 1 cut(s) 232
SinI GGWCC 1 cut(s) 185
SlaI CTCGAG 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SpeI ACTAGT 1 cut(s) 13
Sse9I AATT 4 cut(s) 153, 245, 330, 340
SsiI CCGC 2 cut(s) 72, 337
SspMI CTAG 2 cut(s) 14, 119
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 233
TasI AATT 4 cut(s) 153, 245, 330, 340
TauI GCSGC 1 cut(s) 74
TscAI CASTG 1 cut(s) 311
TspRI CASTG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 340
XhoI CTCGAG 1 cut(s) 232
XspI CTAG 2 cut(s) 14, 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.