Rw6G003700

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0002121
Physical Location & Seq
Forward (+)
6129084 .. 6129599
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003700.1

Sequence Viewer

Length: 516 bp
ATGCAAAATATTTTCATCAATATGGTTTCCCTTCTTGCCGTACTACTCAGTTTCATGGGCTTGACAACGGTACTGCTGGTTCAACCATCCCGTGCGCAAAATTCACAACAAGACTACGTCGATGCTCACAACGCGGCTCGTTTACAAGTTGGTGTACCAAATGTTACATGGGACGCCAGCGTTGCGGCCTATGTTCAATGCTACGCCAACTCAAGAATCAGGGACTGCAGTCTCGTGAATTCCCGTGGGCCTTACGGTGAGAACTTGGCCTACGGCTATGGCAGCAGCTCATTCACAAGCGCCGACGCCGTGAACTTGTGGCTTGCGGAGAAGCCTTACTACAACCACACCTCCAATTCTTGTGTTGGTGGACAGTGTCTGCACTATACTCAAGTGATTTGGCACTACTCTATCAGGCTGGGGTGTGCTAGGGTCCAATGCAGCAACAATGGGTGGTGGTATGTCACCTGCAACTATGATCCACCGGGCAACTACTACGGCAAGCGTCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

171

Amino Acids

19.15

Weight (kDa)

8.15

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 40 - 159 2.5e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 476
Acc16I TGCGCA 1 cut(s) 96
Acc36I ACCTGC 1 cut(s) 476
AccII CGCG 1 cut(s) 134
AciI CCGC 3 cut(s) 134, 185, 326
AclWI GGATC 1 cut(s) 473
AcsI RAATTY 2 cut(s) 100, 238
AcyI GRCGYC 2 cut(s) 174, 306
AfaI GTAC 3 cut(s) 42, 72, 156
AgsI TTSAA 2 cut(s) 83, 197
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 236
AlwI GGATC 1 cut(s) 473
AlwNI CAGNNNCTG 2 cut(s) 225, 379
AoxI GGCC 3 cut(s) 186, 248, 267
ApeKI GCWGC 3 cut(s) 282, 285, 441
ApoI RAATTY 2 cut(s) 100, 238
AspLEI GCGC 2 cut(s) 97, 302
AspS9I GGNCC 2 cut(s) 248, 433
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 269, 457
AvaII GGWCC 1 cut(s) 433
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BauI CACGAG 1 cut(s) 233
BbvI GCAGC 3 cut(s) 294, 297, 453
BccI CCATC 1 cut(s) 94
BceAI ACGGC 4 cut(s) 23, 289, 293, 514
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 429
BfmI CTRYAG 1 cut(s) 226
BfoI RGCGCY 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 5 cut(s) 135, 186, 283, 286, 442
BlsI GCNGC 5 cut(s) 136, 187, 284, 287, 443
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 433
BmgT120I GGNCC 2 cut(s) 248, 433
BmiI GGNNCC 1 cut(s) 434
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 112
BoxI GACNNNNGTC 1 cut(s) 228
BpuEI CTTGAG 2 cut(s) 196, 375
BpuMI CCSGG 1 cut(s) 486
BsaHI GRCGYC 2 cut(s) 174, 306
BsaJI CCNNGG 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 61
BseXI GCAGC 3 cut(s) 294, 297, 453
BseYI CCCAGC 1 cut(s) 418
BsgI GTGCAG 1 cut(s) 365
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 3 cut(s) 188, 250, 269
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 3 cut(s) 185, 236, 492
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 3 cut(s) 185, 236, 492
BsnI GGCC 3 cut(s) 188, 250, 269
Bsp143I GATC 1 cut(s) 478
BspACI CCGC 3 cut(s) 134, 185, 326
BspANI GGCC 3 cut(s) 188, 250, 269
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 1 cut(s) 434
BspMAI CTGCAG 1 cut(s) 230
BspMI ACCTGC 1 cut(s) 476
BspPI GGATC 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 244
BssMI GATC 1 cut(s) 478
BssNI GRCGYC 2 cut(s) 174, 306
BssSI CACGAG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 233
Bst4CI ACNGT 3 cut(s) 70, 257, 375
BstACI GRCGYC 2 cut(s) 174, 306
BstC8I GCNNGC 3 cut(s) 178, 324, 503
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 97, 302
BstKTI GATC 1 cut(s) 481
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 478
BstMWI GCNNNNNNNGC 3 cut(s) 131, 182, 282
BstPAI GACNNNNGTC 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 226
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 3 cut(s) 294, 297, 453
BsuRI GGCC 3 cut(s) 188, 250, 269
BtgI CCRYGG 1 cut(s) 244
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 1 cut(s) 380
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 3 cut(s) 178, 324, 503
CaiI CAGNNNCTG 2 cut(s) 225, 379
CfoI GCGC 2 cut(s) 97, 302
Cfr13I GGNCC 2 cut(s) 248, 433
CseI GACGC 3 cut(s) 182, 314, 494
Csp6I GTAC 3 cut(s) 41, 71, 155
CviAII CATG 2 cut(s) 55, 168
CviQI GTAC 3 cut(s) 41, 71, 155
DdeI CTNAG 1 cut(s) 47
DpnI GATC 1 cut(s) 480
DpnII GATC 1 cut(s) 478
Eco47I GGWCC 1 cut(s) 433
EcoRI GAATTC 1 cut(s) 238
FaeI CATG 2 cut(s) 58, 171
FaiI YATR 8 cut(s) 23, 56, 169, 192, 279, 387, 462, 477
FaqI GGGAC 3 cut(s) 185, 236, 492
FatI CATG 2 cut(s) 54, 167
Fnu4HI GCNGC 5 cut(s) 135, 186, 283, 286, 442
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 5 cut(s) 135, 186, 283, 286, 442
FspBI CTAG 1 cut(s) 429
FspI TGCGCA 1 cut(s) 96
GlaI GCGC 2 cut(s) 96, 301
GluI GCNGC 5 cut(s) 135, 186, 283, 286, 442
GsaI CCCAGC 1 cut(s) 422
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 3 cut(s) 188, 250, 269
HapII CCGG 1 cut(s) 485
HgaI GACGC 3 cut(s) 182, 314, 494
HhaI GCGC 2 cut(s) 97, 302
Hin1I GRCGYC 2 cut(s) 174, 306
Hin1II CATG 2 cut(s) 58, 171
Hin6I GCGC 2 cut(s) 95, 300
HinP1I GCGC 2 cut(s) 95, 300
HinfI GANTC 1 cut(s) 216
HpaII CCGG 1 cut(s) 485
HphI GGTGA 2 cut(s) 269, 457
Hpy166II GTNNAC 4 cut(s) 143, 155, 313, 371
Hpy188III TCNNGA 2 cut(s) 213, 235
Hpy8I GTNNAC 4 cut(s) 143, 155, 313, 371
Hpy99I CGWCG 2 cut(s) 122, 308
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 3 cut(s) 70, 257, 375
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 5 cut(s) 4, 228, 382, 441, 471
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 182, 282
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 2 cut(s) 174, 306
Hsp92II CATG 2 cut(s) 58, 171
HspAI GCGC 2 cut(s) 95, 300
Kzo9I GATC 1 cut(s) 478
LpnPI CCDG 7 cut(s) 62, 190, 205, 400, 404, 481, 498
Lsp1109I GCAGC 3 cut(s) 294, 297, 453
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 429
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 163, 463
MalI GATC 1 cut(s) 480
MboI GATC 1 cut(s) 478
MluCI AATT 3 cut(s) 100, 238, 355
MnlI CCTC 1 cut(s) 361
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 1 cut(s) 486
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 131, 182, 282
NciI CCSGG 1 cut(s) 486
NdeII GATC 1 cut(s) 478
NlaIII CATG 2 cut(s) 58, 171
NlaIV GGNNCC 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 463
NsbI TGCGCA 1 cut(s) 96
PaqCI CACCTGC 1 cut(s) 476
PfeI GAWTC 1 cut(s) 216
PflFI GACNNNGTC 2 cut(s) 116, 375
PkrI GCNGC 5 cut(s) 136, 187, 284, 287, 443
PshAI GACNNNNGTC 1 cut(s) 228
PspFI CCCAGC 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 434
PspPI GGNCC 2 cut(s) 248, 433
PsrI GAACNNNNNNTAC 4 cut(s) 63, 95, 254, 286
PstI CTGCAG 1 cut(s) 230
PstNI CAGNNNCTG 2 cut(s) 225, 379
PsyI GACNNNGTC 2 cut(s) 116, 375
RsaI GTAC 3 cut(s) 42, 72, 156
RsaNI GTAC 3 cut(s) 41, 71, 155
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 5 cut(s) 135, 186, 283, 286, 442
Sau3AI GATC 1 cut(s) 478
Sau96I GGNCC 2 cut(s) 248, 433
ScrFI CCNGG 1 cut(s) 486
SetI ASST 4 cut(s) 120, 290, 353, 470
SfaNI GCATC 1 cut(s) 112
SfcI CTRYAG 1 cut(s) 226
SinI GGWCC 1 cut(s) 433
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 211, 390
SmoI CTYRAG 2 cut(s) 211, 390
Sse9I AATT 3 cut(s) 100, 238, 355
SsiI CCGC 3 cut(s) 134, 185, 326
SspI AATATT 1 cut(s) 10
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 484
TaaI ACNGT 3 cut(s) 70, 257, 375
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 120
TasI AATT 3 cut(s) 100, 238, 355
TauI GCSGC 2 cut(s) 137, 188
TfiI GAWTC 1 cut(s) 216
TscAI CASTG 1 cut(s) 380
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 3 cut(s) 282, 285, 441
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 2 cut(s) 4, 43
TspRI CASTG 1 cut(s) 380
Tth111I GACNNNGTC 2 cut(s) 116, 375
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 2 cut(s) 100, 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 165
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.