RLG00000015184

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002121
Physical Location & Seq
Reverse (-)
62756573 .. 62760104
3532 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015184

Sequence Viewer

Length: 657 bp
ATGCGCAAAATTCACAACAAGACTACGTCGATGCATGCTCACAACGCCGCTCGTTTACAAGTTGGTGTACCAAATGTTACATGGGACGACACCGTTGCGGCCTATGGTCAATGCTACGCCAACTCAAGAATCAGGGACTGCAGTCTCGTGCATTCCCGTGGGCCGTACGGCTGGGGTGTGCTTGGGTCCAATGCAGCAACAATGGGTGGTGGGTTGGTAATGGTTCCTGATCGCTCCTATGTCCGGGACTCACCACAAGACTACCTCAACGTACACAATGTGGCTCGAGCACGAGTTGGAGTGGCAAACATCAGGTGGGACAACACTGTTGCCTCCTACGCTCTGAAGTACACCAAGTCGAGGCTAGAGGATTGCAATCTCGTCCACTCAGGAGGGCCTTACGGCGAGAATTTAGCCAAAGGCAGCGGCTCGTTTACAGCCGCGGCTGCGGCCAATATGTGGGTGGCGGAGAAGCCTTACTACAACTACACCTCCAATGCTTGCACAGGCGGAAAGCAGTGCAGGCACTATACTCAAGTGGTGTGGGCAAAGTCTGTTAGGGTGGGGTGTGCTAGGCTTCAATGCAGGAATTCGTGGTGGTTTGTTACATGCAGCTATTATCCACCAGGCAACTACATCGGGCAGCGCCCATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

219

Amino Acids

24.14

Weight (kDa)

9.51

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 89 - 206 5.9e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB7I CCANNNNNTGG 1 cut(s) 459
AccBSI CCGCTC 1 cut(s) 50
AccII CGCG 1 cut(s) 443
AciI CCGC 8 cut(s) 48, 98, 426, 441, 443, 449, 467, 510
AcoI YGGCCR 1 cut(s) 450
AcsI RAATTY 3 cut(s) 9, 409, 589
AcuI CTGAAG 1 cut(s) 365
AdeI CACNNNGTG 1 cut(s) 280
AfaI GTAC 4 cut(s) 69, 167, 273, 350
AfiI CCNNNNNNNGG 3 cut(s) 243, 360, 459
AgsI TTSAA 1 cut(s) 581
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 1 cut(s) 615
AluI AGCT 1 cut(s) 615
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 285
AoxI GGCC 4 cut(s) 99, 161, 395, 450
ApeKI GCWGC 5 cut(s) 194, 423, 446, 612, 643
ApoI RAATTY 3 cut(s) 9, 409, 589
AspLEI GCGC 2 cut(s) 6, 648
AspS9I GGNCC 3 cut(s) 161, 186, 395
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 285
AvaII GGWCC 1 cut(s) 186
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BauI CACGAG 2 cut(s) 146, 291
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 206, 433, 435, 624
BceAI ACGGC 3 cut(s) 148, 184, 418
BcgI CGANNNNNNTGC 4 cut(s) 77, 111, 619, 653
BciT130I CCWGG 1 cut(s) 627
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 2 cut(s) 365, 573
BfmI CTRYAG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 649
Bme1390I CCNGG 2 cut(s) 245, 627
Bme18I GGWCC 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 285
BmgT120I GGNCC 3 cut(s) 161, 186, 395
BmiI GGNNCC 2 cut(s) 187, 225
BmrFI CCNGG 2 cut(s) 245, 627
BmsI GCATC 1 cut(s) 21
BoxI GACNNNNGTC 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 109, 519
BpuMI CCSGG 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 375
BsaJI CCNNGG 2 cut(s) 157, 441
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 360, 459
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 157, 441
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 3 cut(s) 243, 360, 459
BseMII CTCAG 1 cut(s) 402
BseXI GCAGC 4 cut(s) 206, 433, 435, 624
BseYI CCCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 541
Bsh1236I CGCG 1 cut(s) 443
BshFI GGCC 4 cut(s) 101, 163, 397, 452
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 285
BsiSI CCGG 1 cut(s) 244
BsiWI CGTACG 1 cut(s) 165
BslFI GGGAC 4 cut(s) 98, 149, 260, 332
BslI CCNNNNNNNGG 3 cut(s) 243, 360, 459
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 4 cut(s) 98, 149, 260, 332
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 4 cut(s) 101, 163, 397, 452
BsoBI CYCGRG 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 8 cut(s) 48, 98, 426, 441, 443, 449, 467, 510
BspANI GGCC 4 cut(s) 101, 163, 397, 452
BspCNI CTCAG 1 cut(s) 401
BspFNI CGCG 1 cut(s) 443
BspLI GGNNCC 2 cut(s) 187, 225
BspMAI CTGCAG 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 157, 441
BssMI GATC 1 cut(s) 229
BssSI CACGAG 2 cut(s) 146, 291
Bst2BI CACGAG 2 cut(s) 146, 291
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 2 cut(s) 94, 328
BstC8I GCNNGC 3 cut(s) 36, 502, 524
BstDEI CTNAG 1 cut(s) 388
BstDSI CCRYGG 2 cut(s) 157, 441
BstFNI CGCG 1 cut(s) 443
BstH2I RGCGCY 1 cut(s) 649
BstHHI GCGC 2 cut(s) 6, 648
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 5 cut(s) 44, 338, 446, 449, 523
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 2 cut(s) 38, 612
BstPAI GACNNNNGTC 1 cut(s) 141
BstSCI CCNGG 2 cut(s) 243, 625
BstSFI CTRYAG 1 cut(s) 139
BstUI CGCG 1 cut(s) 443
BstV1I GCAGC 4 cut(s) 206, 433, 435, 624
BsuRI GGCC 4 cut(s) 101, 163, 397, 452
BtgI CCRYGG 2 cut(s) 157, 441
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 2 cut(s) 324, 524
Cac8I GCNNGC 3 cut(s) 36, 502, 524
CaiI CAGNNNCTG 1 cut(s) 138
CfoI GCGC 2 cut(s) 6, 648
Cfr13I GGNCC 3 cut(s) 161, 186, 395
Cfr42I CCGCGG 1 cut(s) 444
Csp6I GTAC 4 cut(s) 68, 166, 272, 349
CspCI CAANNNNNGTGG 2 cut(s) 524, 559
CviAII CATG 3 cut(s) 35, 81, 609
CviQI GTAC 4 cut(s) 68, 166, 272, 349
DdeI CTNAG 1 cut(s) 388
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DraIII CACNNNGTG 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 450
EciI GGCGGA 2 cut(s) 482, 525
Eco47I GGWCC 1 cut(s) 186
Eco57I CTGAAG 1 cut(s) 365
Eco88I CYCGRG 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 625
EcoT22I ATGCAT 1 cut(s) 36
FaeI CATG 3 cut(s) 38, 84, 612
FaiI YATR 8 cut(s) 36, 82, 105, 240, 458, 531, 610, 652
FaqI GGGAC 4 cut(s) 98, 149, 260, 332
FatI CATG 3 cut(s) 34, 80, 608
FspBI CTAG 2 cut(s) 365, 573
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 647
GsaI CCCAGC 1 cut(s) 175
HaeII RGCGCY 1 cut(s) 649
HaeIII GGCC 4 cut(s) 101, 163, 397, 452
HapII CCGG 1 cut(s) 244
HhaI GCGC 2 cut(s) 6, 648
Hin1II CATG 3 cut(s) 38, 84, 612
Hin6I GCGC 2 cut(s) 4, 646
HinP1I GCGC 2 cut(s) 4, 646
HinfI GANTC 2 cut(s) 129, 248
HpaII CCGG 1 cut(s) 244
HphI GGTGA 1 cut(s) 243
Hpy166II GTNNAC 6 cut(s) 56, 68, 274, 351, 385, 435
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 3 cut(s) 126, 227, 390
Hpy8I GTNNAC 6 cut(s) 56, 68, 274, 351, 385, 435
Hpy99I CGWCG 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 94, 328
HpyCH4IV ACGT 2 cut(s) 26, 270
HpyCH4V TGCA 9 cut(s) 34, 141, 151, 194, 375, 504, 522, 585, 612
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 338, 446, 449, 523
HpyF3I CTNAG 1 cut(s) 388
HpySE526I ACGT 2 cut(s) 26, 270
Hsp92II CATG 3 cut(s) 38, 84, 612
HspAI GCGC 2 cut(s) 4, 646
KspI CCGCGG 1 cut(s) 444
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 4 cut(s) 206, 433, 435, 624
LweI GCATC 1 cut(s) 21
MaeI CTAG 2 cut(s) 365, 573
MaeII ACGT 2 cut(s) 26, 270
MaeIII GTNAC 2 cut(s) 76, 604
MalI GATC 1 cut(s) 231
MbiI CCGCTC 1 cut(s) 50
MboI GATC 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 3 cut(s) 9, 409, 589
MlyI GAGTC 1 cut(s) 242
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 6 cut(s) 275, 343, 354, 361, 386, 502
Mph1103I ATGCAT 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 426, 443
MspI CCGG 1 cut(s) 244
MspR9I CCNGG 2 cut(s) 245, 627
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 5 cut(s) 44, 338, 446, 449, 523
NciI CCSGG 1 cut(s) 245
NdeII GATC 1 cut(s) 229
NlaIII CATG 3 cut(s) 38, 84, 612
NlaIV GGNNCC 2 cut(s) 187, 225
NsbI TGCGCA 1 cut(s) 5
NsiI ATGCAT 1 cut(s) 36
NspI RCATGY 2 cut(s) 38, 612
PaeI GCATGC 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 285
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 1 cut(s) 129
Pfl23II CGTACG 1 cut(s) 165
PflFI GACNNNGTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 459
PfoI TCCNGGA 1 cut(s) 243
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PshAI GACNNNNGTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 625
PspFI CCCAGC 1 cut(s) 171
PspGI CCWGG 1 cut(s) 625
PspLI CGTACG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 187, 225
PspPI GGNCC 3 cut(s) 161, 186, 395
PspXI VCTCGAGB 1 cut(s) 285
PstI CTGCAG 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 138
PsyI GACNNNGTC 1 cut(s) 25
RsaI GTAC 4 cut(s) 69, 167, 273, 350
RsaNI GTAC 4 cut(s) 68, 166, 272, 349
RseI CAYNNNNRTG 1 cut(s) 156
SacII CCGCGG 1 cut(s) 444
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 3 cut(s) 161, 186, 395
SchI GAGTC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 245, 627
SduI GDGCHC 1 cut(s) 292
SetI ASST 6 cut(s) 29, 267, 273, 317, 494, 617
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 139
Sfr274I CTCGAG 1 cut(s) 285
Sfr303I CCGCGG 1 cut(s) 444
SgrBI CCGCGG 1 cut(s) 444
SinI GGWCC 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 3 cut(s) 124, 285, 534
SmoI CTYRAG 3 cut(s) 124, 285, 534
SphI GCATGC 1 cut(s) 38
Sse9I AATT 3 cut(s) 9, 409, 589
SsiI CCGC 8 cut(s) 48, 98, 426, 441, 443, 449, 467, 510
SspMI CTAG 2 cut(s) 365, 573
StyD4I CCNGG 2 cut(s) 243, 625
TaaI ACNGT 2 cut(s) 94, 328
TaiI ACGT 2 cut(s) 29, 273
TaqI TCGA 3 cut(s) 29, 286, 359
TasI AATT 3 cut(s) 9, 409, 589
TatI WGTACW 1 cut(s) 348
TauI GCSGC 6 cut(s) 50, 101, 429, 443, 446, 452
TfiI GAWTC 1 cut(s) 129
TscAI CASTG 2 cut(s) 331, 524
TseI GCWGC 5 cut(s) 194, 423, 446, 612, 643
TspRI CASTG 2 cut(s) 331, 524
Tth111I GACNNNGTC 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 186
XapI RAATTY 3 cut(s) 9, 409, 589
XceI RCATGY 2 cut(s) 38, 612
XcmI CCANNNNNNNNNTGG 2 cut(s) 78, 460
XhoI CTCGAG 1 cut(s) 285
XspI CTAG 2 cut(s) 365, 573
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.