Rh6AG043100

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002121
Physical Location & Seq
Forward (+)
6362541 .. 6363038
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG043100.1

Sequence Viewer

Length: 498 bp
ATGGTTTACCTTCTTGCCGTACTACTCAGTTTCATGGGCTTGACAACGGTACTGCTGGTTCAACCCTCCCATGCGCAAAATTCACAACAAGACTACGTCGATGCTCACAACGCGGCTCGTTTACAAGTTGGTGTACCAAATGTTACATGGGACGCCACCGTTGCGGCCTATGCTCAATGCTACGCCAACTCAAGAATCAGGGACTACAGTCTCGTGCATTCCCGTGGGCCTTACGGTGAGAACTTGGCCTACGGCTATGGCAGCAGCTCATTCACAAGCGCCGACGCCGTGAACTTGTGGCTTGCGGAGAAGCCTTACTACAACCACACCTCCAATTCTTGTGTTGGTGGACAGTGTCTGCACTATACTCAAGTGATTTGGCACTACTCTATCAGGCTGGGGTGTGCTAGGGTCGACCAATGCAGCAACAATGGGTGGTGGTATGTCACCTGCAACTATGATCCACCGGGCAACTACTACGGCAAGCGTCCCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

165

Amino Acids

18.53

Weight (kDa)

6.98

Isoelectric Point (pI)

32.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 33 - 153 5.6e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 458
Acc16I TGCGCA 1 cut(s) 75
Acc36I ACCTGC 1 cut(s) 458
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 113
AciI CCGC 3 cut(s) 113, 164, 305
AclWI GGATC 1 cut(s) 455
AcsI RAATTY 1 cut(s) 79
AcyI GRCGYC 2 cut(s) 153, 285
AfaI GTAC 3 cut(s) 21, 51, 135
AgsI TTSAA 1 cut(s) 62
AluBI AGCT 1 cut(s) 267
AluI AGCT 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 358
AoxI GGCC 3 cut(s) 165, 227, 246
ApeKI GCWGC 3 cut(s) 261, 264, 423
ApoI RAATTY 1 cut(s) 79
AspLEI GCGC 2 cut(s) 76, 281
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 248, 439
BarI GAAGNNNNNNTAC 2 cut(s) 302, 334
BauI CACGAG 1 cut(s) 212
BbvI GCAGC 3 cut(s) 273, 276, 435
BceAI ACGGC 4 cut(s) 2, 268, 272, 496
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 205
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 458
BisI GCNGC 5 cut(s) 114, 165, 262, 265, 424
BlsI GCNGC 5 cut(s) 115, 166, 263, 266, 425
Bme1390I CCNGG 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 468
BmsI GCATC 1 cut(s) 91
BoxI GACNNNNGTC 1 cut(s) 207
BpuEI CTTGAG 2 cut(s) 175, 354
BpuMI CCSGG 1 cut(s) 468
BsaHI GRCGYC 2 cut(s) 153, 285
BsaJI CCNNGG 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
BseDI CCNNGG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 40
BseXI GCAGC 3 cut(s) 273, 276, 435
BseYI CCCAGC 1 cut(s) 397
BsgI GTGCAG 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 3 cut(s) 167, 229, 248
BsiSI CCGG 1 cut(s) 467
BslFI GGGAC 3 cut(s) 164, 215, 474
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 3 cut(s) 164, 215, 474
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 3 cut(s) 167, 229, 248
Bsp143I GATC 1 cut(s) 460
BspACI CCGC 3 cut(s) 113, 164, 305
BspANI GGCC 3 cut(s) 167, 229, 248
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 1 cut(s) 113
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 455
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 1 cut(s) 460
BssNI GRCGYC 2 cut(s) 153, 285
BssSI CACGAG 1 cut(s) 212
Bst2BI CACGAG 1 cut(s) 212
Bst4CI ACNGT 5 cut(s) 49, 160, 209, 236, 354
BstACI GRCGYC 2 cut(s) 153, 285
BstC8I GCNNGC 2 cut(s) 303, 485
BstDEI CTNAG 1 cut(s) 26
BstDSI CCRYGG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 113
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 2 cut(s) 76, 281
BstKTI GATC 1 cut(s) 463
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 4 cut(s) 110, 161, 170, 261
BstPAI GACNNNNGTC 1 cut(s) 207
BstSCI CCNGG 1 cut(s) 466
BstSFI CTRYAG 1 cut(s) 205
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 3 cut(s) 273, 276, 435
BsuRI GGCC 3 cut(s) 167, 229, 248
BtgI CCRYGG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 359
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 303, 485
CaiI CAGNNNCTG 1 cut(s) 358
CfoI GCGC 2 cut(s) 76, 281
Cfr13I GGNCC 1 cut(s) 227
CseI GACGC 3 cut(s) 161, 293, 476
Csp6I GTAC 3 cut(s) 20, 50, 134
CviAII CATG 3 cut(s) 34, 71, 147
CviQI GTAC 3 cut(s) 20, 50, 134
DdeI CTNAG 1 cut(s) 26
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
FaeI CATG 3 cut(s) 37, 74, 150
FaiI YATR 8 cut(s) 35, 72, 148, 171, 258, 366, 444, 459
FaqI GGGAC 3 cut(s) 164, 215, 474
FatI CATG 3 cut(s) 33, 70, 146
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 5 cut(s) 114, 165, 262, 265, 424
Fsp4HI GCNGC 5 cut(s) 114, 165, 262, 265, 424
FspBI CTAG 1 cut(s) 408
FspI TGCGCA 1 cut(s) 75
GlaI GCGC 2 cut(s) 75, 280
GluI GCNGC 5 cut(s) 114, 165, 262, 265, 424
GsaI CCCAGC 1 cut(s) 401
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 167, 229, 248
HapII CCGG 1 cut(s) 467
HgaI GACGC 3 cut(s) 161, 293, 476
HhaI GCGC 2 cut(s) 76, 281
Hin1I GRCGYC 2 cut(s) 153, 285
Hin1II CATG 3 cut(s) 37, 74, 150
Hin6I GCGC 2 cut(s) 74, 279
HinP1I GCGC 2 cut(s) 74, 279
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 1 cut(s) 195
HpaII CCGG 1 cut(s) 467
HphI GGTGA 2 cut(s) 248, 439
Hpy166II GTNNAC 6 cut(s) 7, 122, 134, 292, 350, 415
Hpy188III TCNNGA 1 cut(s) 192
Hpy8I GTNNAC 6 cut(s) 7, 122, 134, 292, 350, 415
Hpy99I CGWCG 2 cut(s) 101, 287
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 5 cut(s) 49, 160, 209, 236, 354
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 4 cut(s) 217, 361, 423, 453
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 161, 170, 261
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 2 cut(s) 153, 285
Hsp92II CATG 3 cut(s) 37, 74, 150
HspAI GCGC 2 cut(s) 74, 279
Kzo9I GATC 1 cut(s) 460
LpnPI CCDG 6 cut(s) 41, 184, 379, 383, 463, 480
Lsp1109I GCAGC 3 cut(s) 273, 276, 435
LweI GCATC 1 cut(s) 91
MaeI CTAG 1 cut(s) 408
MaeII ACGT 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 142, 445
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MluCI AATT 2 cut(s) 79, 334
MnlI CCTC 2 cut(s) 76, 340
MslI CAYNNNNRTG 1 cut(s) 222
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 217
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 4 cut(s) 110, 161, 170, 261
NciI CCSGG 1 cut(s) 468
NdeII GATC 1 cut(s) 460
NlaIII CATG 3 cut(s) 37, 74, 150
NmuCI GTSAC 1 cut(s) 445
NsbI TGCGCA 1 cut(s) 75
PaqCI CACCTGC 1 cut(s) 458
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 1 cut(s) 195
PflFI GACNNNGTC 2 cut(s) 95, 354
PkrI GCNGC 5 cut(s) 115, 166, 263, 266, 425
PshAI GACNNNNGTC 1 cut(s) 207
PspFI CCCAGC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 227
PsrI GAACNNNNNNTAC 4 cut(s) 42, 74, 233, 265
PstNI CAGNNNCTG 1 cut(s) 358
PsyI GACNNNGTC 2 cut(s) 95, 354
RsaI GTAC 3 cut(s) 21, 51, 135
RsaNI GTAC 3 cut(s) 20, 50, 134
RseI CAYNNNNRTG 1 cut(s) 222
SalI GTCGAC 1 cut(s) 413
SatI GCNGC 5 cut(s) 114, 165, 262, 265, 424
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 468
SetI ASST 5 cut(s) 12, 99, 269, 332, 452
SfaNI GCATC 1 cut(s) 91
SfcI CTRYAG 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 2 cut(s) 190, 369
SmoI CTYRAG 2 cut(s) 190, 369
Sse9I AATT 2 cut(s) 79, 334
SsiI CCGC 3 cut(s) 113, 164, 305
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 466
TaaI ACNGT 5 cut(s) 49, 160, 209, 236, 354
TaiI ACGT 1 cut(s) 99
TaqI TCGA 2 cut(s) 99, 414
TasI AATT 2 cut(s) 79, 334
TauI GCSGC 2 cut(s) 116, 167
TfiI GAWTC 1 cut(s) 195
TscAI CASTG 1 cut(s) 359
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 3 cut(s) 261, 264, 423
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 22
TspRI CASTG 1 cut(s) 359
Tth111I GACNNNGTC 2 cut(s) 95, 354
XapI RAATTY 1 cut(s) 79
XcmI CCANNNNNNNNNTGG 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.