RchiOBHm_Chr6g0247661

Belongs to the CRISP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0002121
Physical Location & Seq
Forward (+)
3629342 .. 3631856
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22200

Sequence Viewer

Length: 744 bp
ATGAATGGCTTCCGGTTCAAAGCACAGAATGAAGCTCGAGCAGAGGTTGGTATCTCTCCACTTGAATTGAGTGTCAAGCTAGCCCAATATGCTCAGGACTATGCAAACAAGAGAATTCCCAACTACTCAATGAAACATTCAATGGGGCCTTACGCCGAGAACTTGACGAGCAGTATGGGTATGACTGGAGGAGTAGCGGTAAACTACTGTTCTTGTTATAAATACACCAAAACCCACGACTCAAGAAGAAAAAAAAAGGGGGTCAATCAAATCATTATTGTCATTTTTGTTCATGGGATTTGCACTAGCCCACATCTCCCTTGCCCAAAACAACCCTCAGGATTACCTCAACGCCCAGTCGCCCACAATGCCGCTCGTGCCCAGGTCGGAGTCAAGCTATTGACATGGAGCAACTCTCTAGCAGCCTACGCCCAGCAATACGCAAGCAAGAGAATTGCAGACTGCAAATCGGAGCATTCTACCGGTCCATACAGTGAGAACATTGCCGAAGCCTCGTACACGATAACGGGCACGAGAGCAATGGAATTATGGGTCAATGAGAAGCCGAGTTACAACTATCAGTTGAATAAATGCGTCGGAGGCCAGTGCGGTCATTATACTCGGGTAGTAATTTGGCGGAATTCGGCTCAGGTTGGGTGCGCTAGGGTTAGCAACAGTGGGTGGTGGTTCGTCACTTGCAACTACAACCCTCCCGGTAACATTGTTGGGGAACGGCCGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04626 map04016 map04075 map04626
Pfam Domains
Protein Families
CAP

Protein Analysis

247

Amino Acids

27.44

Weight (kDa)

9.48

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 121 - 235 3.4e-16 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AccBSI CCGCTC 1 cut(s) 374
AciI CCGC 4 cut(s) 197, 372, 609, 637
AcoI YGGCCR 1 cut(s) 734
AcsI RAATTY 2 cut(s) 114, 640
AfaI GTAC 1 cut(s) 518
AgeI ACCGGT 1 cut(s) 482
AgsI TTSAA 4 cut(s) 19, 65, 141, 586
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 3 cut(s) 35, 79, 397
AluI AGCT 3 cut(s) 35, 79, 397
Ama87I CYCGRG 2 cut(s) 36, 621
AoxI GGCC 3 cut(s) 146, 601, 734
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 114, 640
AsiGI ACCGGT 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 2 cut(s) 146, 485
AsuC2I CCSGG 1 cut(s) 714
AsuNHI GCTAGC 1 cut(s) 79
AvaI CYCGRG 2 cut(s) 36, 621
AvaII GGWCC 1 cut(s) 485
AxyI CCTNAGG 1 cut(s) 337
BaeGI GKGCMC 2 cut(s) 382, 533
BarI GAAGNNNNNNTAC 2 cut(s) 554, 586
BauI CACGAG 2 cut(s) 375, 532
BbvI GCAGC 1 cut(s) 434
BceAI ACGGC 1 cut(s) 721
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 714
BfaI CTAG 4 cut(s) 80, 306, 419, 663
BisI GCNGC 2 cut(s) 372, 423
BlsI GCNGC 2 cut(s) 373, 424
Bme1390I CCNGG 2 cut(s) 383, 714
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 2 cut(s) 36, 621
BmgT120I GGNCC 2 cut(s) 146, 485
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 383, 714
BmrI ACTGGG 1 cut(s) 350
BmtI GCTAGC 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 350
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpmI CTGGAG 1 cut(s) 207
Bpu10I CCTNAGC 2 cut(s) 93, 648
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 1 cut(s) 714
BsaJI CCNNGG 1 cut(s) 381
BsaWI WCCGGW 2 cut(s) 12, 482
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 3 cut(s) 190, 356, 604
Bse21I CCTNAGG 1 cut(s) 337
Bse3DI GCAATG 2 cut(s) 501, 546
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 381
BseMI GCAATG 2 cut(s) 501, 546
BseMII CTCAG 3 cut(s) 107, 351, 662
BseNI ACTGG 3 cut(s) 190, 356, 604
BseRI GAGGAG 1 cut(s) 204
BseSI GKGCMC 2 cut(s) 382, 533
BseX3I CGGCCG 1 cut(s) 734
BseXI GCAGC 1 cut(s) 434
BseYI CCCAGC 1 cut(s) 432
Bsh1285I CGRYCG 1 cut(s) 737
BshFI GGCC 3 cut(s) 148, 603, 736
BshTI ACCGGT 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 737
BsiHKCI CYCGRG 2 cut(s) 36, 621
BsiSI CCGG 3 cut(s) 13, 483, 714
BsmI GAATGC 1 cut(s) 475
BsnI GGCC 3 cut(s) 148, 603, 736
BsoBI CYCGRG 2 cut(s) 36, 621
Bsp1286I GDGCHC 2 cut(s) 382, 533
BspACI CCGC 4 cut(s) 197, 372, 609, 637
BspANI GGCC 3 cut(s) 148, 603, 736
BspCNI CTCAG 3 cut(s) 106, 350, 661
BspLI GGNNCC 1 cut(s) 147
BspOI GCTAGC 1 cut(s) 83
BsrBI CCGCTC 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 501, 546
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 3 cut(s) 190, 356, 604
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 1 cut(s) 381
BssSI CACGAG 2 cut(s) 375, 532
Bst2BI CACGAG 2 cut(s) 375, 532
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 3 cut(s) 209, 494, 677
BstC8I GCNNGC 2 cut(s) 81, 445
BstDEI CTNAG 3 cut(s) 93, 337, 648
BstHHI GCGC 1 cut(s) 662
BstMCI CGRYCG 1 cut(s) 737
BstMWI GCNNNNNNNGC 5 cut(s) 89, 368, 377, 428, 600
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 2 cut(s) 381, 712
BstSLI GKGCMC 2 cut(s) 382, 533
BstV1I GCAGC 1 cut(s) 434
BstZI CGGCCG 1 cut(s) 734
Bsu36I CCTNAGG 1 cut(s) 337
BsuRI GGCC 3 cut(s) 148, 603, 736
BtsIMutI CAGTG 3 cut(s) 499, 611, 682
Cac8I GCNNGC 2 cut(s) 81, 445
CfoI GCGC 1 cut(s) 662
Cfr10I RCCGGY 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 146, 485
CseI GACGC 1 cut(s) 583
Csp6I GTAC 1 cut(s) 517
CspAI ACCGGT 1 cut(s) 482
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviAII CATG 2 cut(s) 293, 405
CviQI GTAC 1 cut(s) 517
DdeI CTNAG 3 cut(s) 93, 337, 648
EaeI YGGCCR 1 cut(s) 734
EagI CGGCCG 1 cut(s) 734
EciI GGCGGA 1 cut(s) 652
EclXI CGGCCG 1 cut(s) 734
Eco47I GGWCC 1 cut(s) 485
Eco52I CGGCCG 1 cut(s) 734
Eco81I CCTNAGG 1 cut(s) 337
Eco88I CYCGRG 2 cut(s) 36, 621
EcoO109I RGGNCCY 1 cut(s) 146
EcoRI GAATTC 2 cut(s) 114, 640
EcoRII CCWGG 1 cut(s) 381
FaeI CATG 2 cut(s) 296, 408
FatI CATG 2 cut(s) 292, 404
Fnu4HI GCNGC 2 cut(s) 372, 423
Fsp4HI GCNGC 2 cut(s) 372, 423
FspBI CTAG 4 cut(s) 80, 306, 419, 663
GlaI GCGC 1 cut(s) 661
GluI GCNGC 2 cut(s) 372, 423
GsaI CCCAGC 1 cut(s) 436
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 3 cut(s) 148, 603, 736
HapII CCGG 3 cut(s) 13, 483, 714
HgaI GACGC 1 cut(s) 583
HhaI GCGC 1 cut(s) 662
Hin1II CATG 2 cut(s) 296, 408
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HinfI GANTC 2 cut(s) 239, 390
HpaII CCGG 3 cut(s) 13, 483, 714
Hpy166II GTNNAC 2 cut(s) 202, 519
Hpy188I TCNGA 3 cut(s) 389, 472, 599
Hpy188III TCNNGA 3 cut(s) 95, 243, 339
Hpy8I GTNNAC 2 cut(s) 202, 519
Hpy99I CGWCG 1 cut(s) 599
HpyCH4III ACNGT 3 cut(s) 209, 494, 677
HpyCH4V TGCA 5 cut(s) 104, 303, 458, 465, 699
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 368, 377, 428, 600
HpyF3I CTNAG 3 cut(s) 93, 337, 648
Hsp92II CATG 2 cut(s) 296, 408
HspAI GCGC 1 cut(s) 660
LmnI GCTCC 2 cut(s) 408, 472
Lsp1109I GCAGC 1 cut(s) 434
MaeI CTAG 4 cut(s) 80, 306, 419, 663
MaeIII GTNAC 3 cut(s) 569, 691, 716
MbiI CCGCTC 1 cut(s) 374
MboII GAAGA 1 cut(s) 258
MhlI GDGCHC 2 cut(s) 382, 533
MluCI AATT 6 cut(s) 65, 114, 453, 545, 630, 640
MlyI GAGTC 2 cut(s) 233, 399
MmeI TCCRAC 2 cut(s) 367, 577
MnlI CCTC 7 cut(s) 37, 182, 346, 357, 523, 593, 720
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 3 cut(s) 13, 483, 714
MspR9I CCNGG 2 cut(s) 383, 714
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 5 cut(s) 89, 368, 377, 428, 600
NciI CCSGG 1 cut(s) 714
NheI GCTAGC 1 cut(s) 79
NlaIII CATG 2 cut(s) 296, 408
NlaIV GGNNCC 1 cut(s) 147
NmeAIII GCCGAG 2 cut(s) 181, 591
NmuCI GTSAC 1 cut(s) 691
PaeR7I CTCGAG 1 cut(s) 36
PctI GAATGC 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 482
PkrI GCNGC 2 cut(s) 373, 424
PleI GAGTC 2 cut(s) 233, 398
PpsI GAGTC 2 cut(s) 233, 398
PsiI TTATAA 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 146, 485
PspXI VCTCGAGB 1 cut(s) 36
RsaI GTAC 1 cut(s) 518
RsaNI GTAC 1 cut(s) 517
SatI GCNGC 2 cut(s) 372, 423
Sau96I GGNCC 2 cut(s) 146, 485
SchI GAGTC 2 cut(s) 233, 399
ScrFI CCNGG 2 cut(s) 383, 714
SduI GDGCHC 2 cut(s) 382, 533
SetI ASST 7 cut(s) 37, 48, 81, 349, 387, 399, 654
Sfr274I CTCGAG 1 cut(s) 36
SinI GGWCC 1 cut(s) 485
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 36, 241
SmoI CTYRAG 2 cut(s) 36, 241
Sse9I AATT 6 cut(s) 65, 114, 453, 545, 630, 640
SsiI CCGC 4 cut(s) 197, 372, 609, 637
SspMI CTAG 4 cut(s) 80, 306, 419, 663
StyD4I CCNGG 2 cut(s) 381, 712
TaaI ACNGT 3 cut(s) 209, 494, 677
TaqI TCGA 1 cut(s) 37
TasI AATT 6 cut(s) 65, 114, 453, 545, 630, 640
TauI GCSGC 1 cut(s) 374
TscAI CASTG 3 cut(s) 499, 611, 682
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 4 cut(s) 17, 45, 146, 281
TspRI CASTG 3 cut(s) 499, 611, 682
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 2 cut(s) 114, 640
XhoI CTCGAG 1 cut(s) 36
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 4 cut(s) 80, 306, 419, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.