Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009569.1

Orthogroup ID

OG0002121

Physical Location & Seq

Genomic Coordinates Forward (+)

4258 .. 6331

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009569.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgacactattttggcctatgctcaatgctatgccaattcaagaatcagagactgcaatatcgtgccttttttggcatgggtcttacggtgagaagttggcatacggcagcgactcattcacaagggctgacgccgtgaacttgtggcttgtggacaagcctactacaactacgcttccaattctcgtgttggtggacagtgtctgtatactcgggtccaatgaagcaacattgggtggtgggttggcaatggttcctccctcctatgcccagaattcacaacaagactacctcaatgcacacaatgcggctcgcacacaagtcggattggcaaacatcatgtgggacagcactgttgctgcctacgctctgaactacaccaagtcaaggatcgcggattgcaatctcgtccactcaggagggccttacggcgaaaatttagccaaaggcagcggctcattcacggccactgctgcggttaatttgtgggtggcggaaaagccttactacaactacacttccaatgcttgcaccggcggaaagcagtgcctgcactatactcaagttgtgtgggcagagtctgttaggttggggtgcgctaggcttcaatgtagcaatttgtggtggtttgttacatgcagctatgatccaccaggcaactacatcggggagcatccatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 ko04626 map04016 map04075 map04626

Pfam Domains

Protein Families

CAP

Protein Analysis

227

Amino Acids

24.79

Weight (kDa)

5.42

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50050 AT1G50050 AT1G50060
fragaria_vesca	FvH4_2g02850 FvH4_2g02921 FvH4_2g02940 FvH4_2g02950
malus_domestica	MD10G1112900.v1.1
prunus_persica	Prupe.8G152700_v2.0.a1
pyrus_communis	pycom10g09770
rosa_chinensis	RchiOBHm_Chr6g0247661 RchiOBHm_Chr6g0247731 RchiOBHm_Chr6g0247741
rosa_laevigata	RLG00000015183 RLG00000015184
rosa_multiflora	Rmu_sc0003092.1_g000034 Rmu_sc0004057.1_g000007 Rmu_sc0009569.1_g000001 Rmu_sc0009569.1_g000002 Rmu_sc0039728.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433280 Rroxscaffold_180G00433300 Rroxscaffold_180G00433310 Rroxscaffold_7G00213700 Rroxscaffold_7G00213710 Rroxscaffold_7G00213720
rosa_rugosa	Rorug05G0528100 Rorug05G0528200
rosa_samantha	Rh6AG043100 Rh6AG043200 Rh6AG043300 Rh6BG037100 Rh6BG037700 Rh6BG037900 Rh6CG036600 Rh6CG036700 Rh6DG033600 Rh6DG033700
rosa_wichuraiana	Rw6G003650 Rw6G003700 Rw6G003710 Rw6G003720 Rw6G003740 Rw6G003750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	208
AccII	CGCG	1 cut(s)	395
AciI	CCGC	6 cut(s)	308, 395, 453, 476, 494, 537
AclWI	GGATC	2 cut(s)	398, 641
AcoI	YGGCCR	1 cut(s)	465
AcsI	RAATTY	2 cut(s)	274, 436
AcyI	GRCGYC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	41, 608
AjnI	CCWGG	1 cut(s)	652
AluBI	AGCT	1 cut(s)	642
AluI	AGCT	1 cut(s)	642
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	2 cut(s)	398, 641
AlwNI	CAGNNNCTG	4 cut(s)	53, 204, 550, 581
Ama87I	CYCGRG	1 cut(s)	212
AoxI	GGCC	3 cut(s)	14, 422, 465
ApeKI	GCWGC	5 cut(s)	108, 359, 450, 473, 639
ApoI	RAATTY	2 cut(s)	274, 436
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	216, 422
AsuHPI	GGTGA	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	216
BarI	GAAGNNNNNNTAC	2 cut(s)	86, 118
BauI	CACGAG	1 cut(s)	185
BbvI	GCAGC	5 cut(s)	120, 346, 460, 462, 651
BceAI	ACGGC	4 cut(s)	119, 121, 445, 480
BcgI	CGANNNNNNTGC	4 cut(s)	304, 338, 646, 680
BciT130I	CCWGG	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	600
BisI	GCNGC	7 cut(s)	109, 309, 360, 451, 454, 474, 640
BlsI	GCNGC	7 cut(s)	110, 310, 361, 452, 455, 475, 641
Bme1390I	CCNGG	1 cut(s)	654
Bme18I	GGWCC	1 cut(s)	216
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	216, 422
BmiI	GGNNCC	2 cut(s)	217, 255
BmrFI	CCNGG	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	402
BsaHI	GRCGYC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	387
Bse118I	RCCGGY	1 cut(s)	533
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	654
BseGI	GGATG	1 cut(s)	673
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	387
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	429
BseXI	GCAGC	5 cut(s)	120, 346, 460, 462, 651
BsgI	GTGCAG	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	3 cut(s)	16, 424, 467
BsiHKCI	CYCGRG	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	534
BslFI	GGGAC	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	387
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	359
BsnI	GGCC	3 cut(s)	16, 424, 467
BsoBI	CYCGRG	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	390, 646
BspACI	CCGC	6 cut(s)	308, 395, 453, 476, 494, 537
BspANI	GGCC	3 cut(s)	16, 424, 467
BspCNI	CTCAG	1 cut(s)	428
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	217, 255
BspPI	GGATC	2 cut(s)	398, 641
BsrDI	GCAATG	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	533
BssAI	RCCGGY	1 cut(s)	533
BssMI	GATC	2 cut(s)	390, 646
BssNAI	GTATAC	1 cut(s)	209
BssNI	GRCGYC	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	185
Bst1107I	GTATAC	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	3 cut(s)	89, 200, 355
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	2 cut(s)	305, 550
BstC8I	GCNNGC	3 cut(s)	313, 529, 551
BstDEI	CTNAG	1 cut(s)	415
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	2 cut(s)	393, 649
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	390, 646
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 365, 473, 550
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	1 cut(s)	639
BstSCI	CCNGG	1 cut(s)	652
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	5 cut(s)	120, 346, 460, 462, 651
BstZ17I	GTATAC	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	16, 424, 467
BtsCI	GGATG	1 cut(s)	673
BtsI	GCAGTG	2 cut(s)	468, 551
BtsIMutI	CAGTG	4 cut(s)	205, 351, 468, 551
Cac8I	GCNNGC	3 cut(s)	313, 529, 551
CaiI	CAGNNNCTG	4 cut(s)	53, 204, 550, 581
CfoI	GCGC	1 cut(s)	599
Cfr10I	RCCGGY	1 cut(s)	533
Cfr13I	GGNCC	2 cut(s)	216, 422
CseI	GACGC	1 cut(s)	140
CspCI	CAANNNNNGTGG	2 cut(s)	551, 586
CviAII	CATG	3 cut(s)	77, 340, 636
DdeI	CTNAG	1 cut(s)	415
DpnI	GATC	2 cut(s)	392, 648
DpnII	GATC	2 cut(s)	390, 646
EaeI	YGGCCR	1 cut(s)	465
EciI	GGCGGA	2 cut(s)	509, 552
Eco47I	GGWCC	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	652
FaeI	CATG	3 cut(s)	80, 343, 639
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	3 cut(s)	76, 339, 635
FblI	GTMKAC	1 cut(s)	208
Fnu4HI	GCNGC	7 cut(s)	109, 309, 360, 451, 454, 474, 640
FokI	GGATG	1 cut(s)	660
Fsp4HI	GCNGC	7 cut(s)	109, 309, 360, 451, 454, 474, 640
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	7 cut(s)	109, 309, 360, 451, 454, 474, 640
HaeIII	GGCC	3 cut(s)	16, 424, 467
HapII	CCGG	1 cut(s)	534
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	80, 343, 639
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HinfI	GANTC	3 cut(s)	44, 113, 578
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	5 cut(s)	139, 154, 196, 209, 412
Hpy188I	TCNGA	3 cut(s)	49, 326, 372
Hpy188III	TCNNGA	2 cut(s)	41, 417
Hpy8I	GTNNAC	5 cut(s)	139, 154, 196, 209, 412
HpyCH4III	ACNGT	3 cut(s)	89, 200, 355
HpyCH4V	TGCA	6 cut(s)	56, 299, 402, 531, 553, 639
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 365, 473, 550
HpyF3I	CTNAG	1 cut(s)	415
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	3 cut(s)	80, 343, 639
HspAI	GCGC	1 cut(s)	597
Kzo9I	GATC	2 cut(s)	390, 646
LmnI	GCTCC	1 cut(s)	670
LpnPI	CCDG	6 cut(s)	284, 402, 547, 563, 639, 666
Lsp1109I	GCAGC	5 cut(s)	120, 346, 460, 462, 651
MaeI	CTAG	1 cut(s)	600
MaeIII	GTNAC	1 cut(s)	631
MalI	GATC	2 cut(s)	392, 648
MboI	GATC	2 cut(s)	390, 646
MluCI	AATT	6 cut(s)	36, 180, 274, 436, 481, 616
MlyI	GAGTC	2 cut(s)	107, 587
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	4 cut(s)	267, 271, 302, 413
MseI	TTAA	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	453
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	1 cut(s)	654
MvaI	CCWGG	1 cut(s)	654
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	4 cut(s)	305, 365, 473, 550
NdeII	GATC	2 cut(s)	390, 646
NlaIII	CATG	3 cut(s)	80, 343, 639
NlaIV	GGNNCC	2 cut(s)	217, 255
NspI	RCATGY	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	44
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	7 cut(s)	110, 310, 361, 452, 455, 475, 641
PleI	GAGTC	2 cut(s)	107, 586
PpsI	GAGTC	2 cut(s)	107, 586
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	217, 255
PspPI	GGNCC	2 cut(s)	216, 422
PstNI	CAGNNNCTG	4 cut(s)	53, 204, 550, 581
PsyI	GACNNNGTC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	7 cut(s)	109, 309, 360, 451, 454, 474, 640
Sau3AI	GATC	2 cut(s)	390, 646
Sau96I	GGNCC	2 cut(s)	216, 422
SchI	GAGTC	2 cut(s)	107, 587
ScrFI	CCNGG	1 cut(s)	654
SetI	ASST	3 cut(s)	294, 590, 644
SgrAI	CRCCGGYG	1 cut(s)	533
SinI	GGWCC	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	561
SmoI	CTYRAG	1 cut(s)	561
Sse9I	AATT	6 cut(s)	36, 180, 274, 436, 481, 616
SsiI	CCGC	6 cut(s)	308, 395, 453, 476, 494, 537
SspMI	CTAG	1 cut(s)	600
StyD4I	CCNGG	1 cut(s)	652
TaaI	ACNGT	3 cut(s)	89, 200, 355
TasI	AATT	6 cut(s)	36, 180, 274, 436, 481, 616
TauI	GCSGC	2 cut(s)	311, 456
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TscAI	CASTG	4 cut(s)	205, 358, 475, 551
TseI	GCWGC	5 cut(s)	108, 359, 450, 473, 639
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	4 cut(s)	205, 358, 475, 551
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	2 cut(s)	274, 436
XceI	RCATGY	1 cut(s)	639
XmiI	GTMKAC	1 cut(s)	208
XspI	CTAG	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.