Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000558

Physical Location & Seq

Genomic Coordinates Forward (+)

23881512 .. 23883354

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G64350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCGAAATCAATGGCGACGCTAGATTCTGGCACCACATGTTCCTCCTGGAATCAATCCGGCGACCGTTTAGCCGCCGGATCTCTCAACGGAAAACTTTCTATATACGAATCCTCTACTTCGTCTTCTTCGACTTTCAGTTGCACTTCCAAAGTTAGGGTTAGTGAATCGAGTATCGTAAAGATCGTTTGGTTGCCTTCAGAGTACGGCGACGCAGTAGCCTGCGTTTGCGAAGACGGGAGCTTATCGATTTGGGAGGAGCTCTCTGAAGACGCACATGGTCTTGAATGGAAATTGTGTAAGAGTATGAAGAATAAGTCTAGCCAAGTGCTCGATGTTCAATTTGGAGTTTCCAGAAAGAGTCTAAAGATGGTTGCTGCATATTCTGATGGGTACCTTAGGGTTTTTGAGCTCTTGAATCCATTGGAGCTAAAGAATTGGCAACTTCAGGCTGAGTTTCAGAATGTTATCGATTCTCTATCGACGCTCGGTAAACCTTCAAGCTTATCTGCTTCTGTTTCTTGGAATCCGATGAAAGGTGAAGAGCAAGAACCAAGCTTTGTTTTAGCCTTCAACTCTGACTCTCCACATCTTAACTCTTCCAAGATTTGGGAGTTTGATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCATGTTGGTCTAGCTCCTGATCTTGAAGGAAGGCTTCCAGTAAAGAAGGTCTCCTCGCTTTCTGGCCATCAAGGCGAGGTTTGGCAAATGGAATGGGACATGAGTGGCATGACTTTAGCTAGCACTGGAAGTGATGGAATGGTCAAATTGTGGCAGTCAAACTTAAACGGTGAGTGGCATGAGCAGGCCACGCTTGAACCAGTTCCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000323 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0006996 GO:0006997 GO:0006999 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0022402 GO:0031080 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0071840 GO:0098588 GO:0098805 GO:0098813 GO:0098852 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 ko04150 map03013 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

326

Amino Acids

35.7

Weight (kDa)

4.96

Isoelectric Point (pI)

45.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	6 - 126	2.3e-06	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_RIG_2nd	PF23775	7 - 141	8.8e-06	RIG second beta-propeller
Beta-prop_THOC3	PF25174	270 - 310	1e-05	THOC3 beta-propeller domain
WD40	PF00400	271 - 307	1.7e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64350
fragaria_vesca	FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica	MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica	Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis	pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis	RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata	RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora	Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa	Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha	Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana	Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	393
AccB1I	GGYRCC	2 cut(s)	32, 393
AccB7I	CCANNNNNTGG	1 cut(s)	609
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	2 cut(s)	88, 674
AcoI	YGGCCR	2 cut(s)	715, 832
AcuI	CTGAAG	3 cut(s)	183, 288, 431
AfaI	GTAC	2 cut(s)	206, 395
AfiI	CCNNNNNNNGG	4 cut(s)	156, 536, 609, 713
AflIII	ACRYGT	1 cut(s)	38
AgsI	TTSAA	7 cut(s)	287, 341, 418, 501, 574, 794, 965
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	9 cut(s)	243, 262, 412, 430, 504, 558, 626, 782, 887
AluI	AGCT	9 cut(s)	243, 262, 412, 430, 504, 558, 626, 782, 887
Alw21I	GWGCWC	3 cut(s)	264, 333, 414
Alw26I	GTCTC	1 cut(s)	823
AlwI	GGATC	2 cut(s)	88, 674
AoxI	GGCC	3 cut(s)	715, 832, 954
ApeKI	GCWGC	1 cut(s)	377
Asp700I	GAANNNNTTC	2 cut(s)	97, 969
Asp718I	GGTACC	1 cut(s)	393
AsuHPI	GGTGA	3 cut(s)	551, 689, 950
AsuNHI	GCTAGC	1 cut(s)	887
AxyI	CCTNAGG	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	834
BanI	GGYRCC	2 cut(s)	32, 393
BanII	GRGCYC	3 cut(s)	264, 414, 706
BbsI	GAAGAC	4 cut(s)	117, 240, 276, 675
Bbv12I	GWGCWC	3 cut(s)	264, 333, 414
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	5 cut(s)	364, 383, 630, 843, 896
BceAI	ACGGC	2 cut(s)	223, 722
BcgI	CGANNNNNNTGC	2 cut(s)	716, 750
BciT130I	CCWGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	823
BfaI	CTAG	4 cut(s)	23, 321, 779, 888
BglI	GCCNNNNNGGC	1 cut(s)	840
BisI	GCNGC	2 cut(s)	75, 378
BlsI	GCNGC	2 cut(s)	76, 379
Bme1390I	CCNGG	1 cut(s)	49
BmiI	GGNNCC	3 cut(s)	34, 395, 705
BmrFI	CCNGG	1 cut(s)	49
BmtI	GCTAGC	1 cut(s)	891
BpiI	GAAGAC	4 cut(s)	117, 240, 276, 675
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
Bsa29I	ATCGAT	2 cut(s)	248, 471
BsaI	GGTCTC	1 cut(s)	823
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 536, 609, 713
Bse1I	ACTGG	4 cut(s)	683, 806, 898, 968
Bse21I	CCTNAGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	49
BseCI	ATCGAT	2 cut(s)	248, 471
BseLI	CCNNNNNNNGG	4 cut(s)	156, 536, 609, 713
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	4 cut(s)	683, 806, 898, 968
BseRI	GAGGAG	2 cut(s)	272, 811
BseXI	GCAGC	1 cut(s)	364
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	3 cut(s)	717, 834, 956
BshNI	GGYRCC	2 cut(s)	32, 393
BshVI	ATCGAT	2 cut(s)	248, 471
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	3 cut(s)	264, 333, 414
BsiSI	CCGG	2 cut(s)	60, 78
BslFI	GGGAC	1 cut(s)	878
BslI	CCNNNNNNNGG	4 cut(s)	156, 536, 609, 713
BsmAI	GTCTC	1 cut(s)	823
BsmFI	GGGAC	1 cut(s)	878
BsnI	GGCC	3 cut(s)	717, 834, 956
Bso31I	GGTCTC	1 cut(s)	823
Bsp1286I	GDGCHC	4 cut(s)	264, 333, 414, 706
Bsp143I	GATC	4 cut(s)	80, 183, 679, 787
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	717, 834, 956
BspCNI	CTCAG	1 cut(s)	445
BspDI	ATCGAT	2 cut(s)	248, 471
BspLI	GGNNCC	3 cut(s)	34, 395, 705
BspOI	GCTAGC	1 cut(s)	891
BspPI	GGATC	2 cut(s)	88, 674
BspQI	GCTCTTC	1 cut(s)	537
BspT107I	GGYRCC	2 cut(s)	32, 393
BspTNI	GGTCTC	1 cut(s)	823
BsrI	ACTGG	4 cut(s)	683, 806, 898, 968
BssMI	GATC	4 cut(s)	80, 183, 679, 787
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	2 cut(s)	68, 938
Bst6I	CTCTTC	2 cut(s)	537, 604
BstC8I	GCNNGC	3 cut(s)	223, 889, 954
BstDEI	CTNAG	2 cut(s)	398, 453
BstKTI	GATC	4 cut(s)	83, 186, 682, 790
BstMAI	GTCTC	1 cut(s)	823
BstMBI	GATC	4 cut(s)	80, 183, 679, 787
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	656, 840, 958
BstNI	CCWGG	1 cut(s)	49
BstNSI	RCATGY	2 cut(s)	42, 773
BstSCI	CCNGG	1 cut(s)	47
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	4 cut(s)	117, 240, 276, 675
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
Bsu15I	ATCGAT	2 cut(s)	248, 471
Bsu36I	CCTNAGG	1 cut(s)	398
BsuRI	GGCC	3 cut(s)	717, 834, 956
BsuTUI	ATCGAT	2 cut(s)	248, 471
BtsIMutI	CAGTG	1 cut(s)	891
Cac8I	GCNNGC	3 cut(s)	223, 889, 954
ClaI	ATCGAT	2 cut(s)	248, 471
CseI	GACGC	4 cut(s)	28, 221, 281, 493
Csp6I	GTAC	2 cut(s)	205, 394
CviAII	CATG	7 cut(s)	39, 278, 699, 770, 868, 877, 947
CviQI	GTAC	2 cut(s)	205, 394
DdeI	CTNAG	2 cut(s)	398, 453
DpnI	GATC	4 cut(s)	82, 185, 681, 789
DpnII	GATC	4 cut(s)	80, 183, 679, 787
EaeI	YGGCCR	2 cut(s)	715, 832
Eam1104I	CTCTTC	2 cut(s)	537, 604
EarI	CTCTTC	2 cut(s)	537, 604
Ecl136II	GAGCTC	2 cut(s)	262, 412
Eco24I	GRGCYC	3 cut(s)	264, 414, 706
Eco31I	GGTCTC	1 cut(s)	823
Eco53kI	GAGCTC	2 cut(s)	262, 412
Eco57I	CTGAAG	3 cut(s)	183, 288, 431
Eco81I	CCTNAGG	1 cut(s)	398
EcoICRI	GAGCTC	2 cut(s)	262, 412
EcoRII	CCWGG	1 cut(s)	47
EcoT38I	GRGCYC	3 cut(s)	264, 414, 706
FaeI	CATG	7 cut(s)	42, 281, 702, 773, 871, 880, 950
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FaqI	GGGAC	1 cut(s)	878
FatI	CATG	7 cut(s)	38, 277, 698, 769, 867, 876, 946
Fnu4HI	GCNGC	2 cut(s)	75, 378
FriOI	GRGCYC	3 cut(s)	264, 414, 706
Fsp4HI	GCNGC	2 cut(s)	75, 378
FspBI	CTAG	4 cut(s)	23, 321, 779, 888
GluI	GCNGC	2 cut(s)	75, 378
HaeIII	GGCC	3 cut(s)	717, 834, 956
HapII	CCGG	2 cut(s)	60, 78
HgaI	GACGC	4 cut(s)	28, 221, 281, 493
Hin1II	CATG	7 cut(s)	42, 281, 702, 773, 871, 880, 950
HindIII	AAGCTT	2 cut(s)	502, 556
HinfI	GANTC	9 cut(s)	26, 52, 110, 167, 361, 418, 473, 526, 581
HpaII	CCGG	2 cut(s)	60, 78
HphI	GGTGA	3 cut(s)	551, 689, 950
Hpy166II	GTNNAC	1 cut(s)	494
Hpy188I	TCNGA	7 cut(s)	202, 268, 388, 462, 531, 580, 708
Hpy188III	TCNNGA	5 cut(s)	284, 354, 415, 785, 791
Hpy8I	GTNNAC	1 cut(s)	494
Hpy99I	CGWCG	3 cut(s)	22, 215, 487
HpyAV	CCTTC	6 cut(s)	207, 507, 580, 788, 792, 808
HpyCH4III	ACNGT	2 cut(s)	68, 938
HpyCH4V	TGCA	3 cut(s)	144, 380, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	656, 840, 958
HpyF3I	CTNAG	2 cut(s)	398, 453
Hsp92II	CATG	7 cut(s)	42, 281, 702, 773, 871, 880, 950
KpnI	GGTACC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	80, 183, 679, 787
LguI	GCTCTTC	1 cut(s)	537
LmnI	GCTCC	5 cut(s)	240, 259, 427, 709, 787
Lsp1109I	GCAGC	1 cut(s)	364
MaeI	CTAG	4 cut(s)	23, 321, 779, 888
MalI	GATC	4 cut(s)	82, 185, 681, 789
MboI	GATC	4 cut(s)	80, 183, 679, 787
MboII	GAAGA	8 cut(s)	117, 120, 245, 281, 322, 554, 591, 680
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	4 cut(s)	264, 333, 414, 706
MlsI	TGGCCA	1 cut(s)	834
MluCI	AATT	5 cut(s)	293, 341, 436, 653, 914
MluNI	TGGCCA	1 cut(s)	834
MlyI	GAGTC	2 cut(s)	370, 575
MnlI	CCTC	6 cut(s)	55, 124, 250, 721, 832, 838
Mox20I	TGGCCA	1 cut(s)	834
MroXI	GAANNNNTTC	2 cut(s)	97, 969
MscI	TGGCCA	1 cut(s)	834
MseI	TTAA	2 cut(s)	594, 932
Msp20I	TGGCCA	1 cut(s)	834
MspI	CCGG	2 cut(s)	60, 78
MspR9I	CCNGG	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	656, 840, 958
NdeII	GATC	4 cut(s)	80, 183, 679, 787
NheI	GCTAGC	1 cut(s)	887
NlaIII	CATG	7 cut(s)	42, 281, 702, 773, 871, 880, 950
NlaIV	GGNNCC	3 cut(s)	34, 395, 705
NspI	RCATGY	2 cut(s)	42, 773
PciI	ACATGT	1 cut(s)	38
PciSI	GCTCTTC	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 183
PdmI	GAANNNNTTC	2 cut(s)	97, 969
PfeI	GAWTC	7 cut(s)	26, 52, 110, 167, 418, 473, 526
PflMI	CCANNNNNTGG	1 cut(s)	609
PfoI	TCCNGGA	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	76, 379
PleI	GAGTC	2 cut(s)	369, 575
PpsI	GAGTC	2 cut(s)	369, 575
PscI	ACATGT	1 cut(s)	38
Psp124BI	GAGCTC	2 cut(s)	264, 414
Psp6I	CCWGG	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	34, 395, 705
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	206, 395
RsaNI	GTAC	2 cut(s)	205, 394
SacI	GAGCTC	2 cut(s)	264, 414
SapI	GCTCTTC	1 cut(s)	537
SaqAI	TTAA	2 cut(s)	594, 932
SatI	GCNGC	2 cut(s)	75, 378
Sau3AI	GATC	4 cut(s)	80, 183, 679, 787
SchI	GAGTC	2 cut(s)	370, 575
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	4 cut(s)	264, 333, 414, 706
Sse9I	AATT	5 cut(s)	293, 341, 436, 653, 914
SsiI	CCGC	1 cut(s)	75
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	4 cut(s)	23, 321, 779, 888
SstI	GAGCTC	2 cut(s)	264, 414
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	68, 938
TaqI	TCGA	6 cut(s)	131, 170, 248, 333, 471, 482
TasI	AATT	5 cut(s)	293, 341, 436, 653, 914
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	7 cut(s)	26, 52, 110, 167, 418, 473, 526
Tru1I	TTAA	2 cut(s)	594, 932
Tru9I	TTAA	2 cut(s)	594, 932
TscAI	CASTG	1 cut(s)	898
TseI	GCWGC	1 cut(s)	377
TspDTI	ATGAA	3 cut(s)	323, 548, 636
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	898
Van91I	CCANNNNNTGG	1 cut(s)	609
XceI	RCATGY	2 cut(s)	42, 773
XmnI	GAANNNNTTC	2 cut(s)	97, 969
XspI	CTAG	4 cut(s)	23, 321, 779, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.