Rh7CG154100

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000558
Physical Location & Seq
Reverse (-)
12688920 .. 12692632
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG154100.1

Sequence Viewer

Length: 984 bp
ATGGAGAAATCTCTGGTGACGCTCGATAAAGGAACCACCTGCTCCTCTTGGAACTACTCCGGCCAGAGATTAGCCACCGGCTCCCTCGACGGAACTCTCACCATCTTCGACTCGCGCCACCCGTCTTCTTCTTCCTCTTTCTCCTCCACCTCAAAATCCAAGGTGCACCACGCTTCTGACATTGTCAAAGTTGTCTGGGTTCCTCCGGAGTTCGGTCACGCAGTGGCGTGTGTTTGCGGAGATGGAACGTTGTCGTTGTGGGAAGAGATTGTTGAAGATGCACAACCTCTTCAATGGAAGCTGTGCAAAAGCTTTGGAAGTGATTCAGCTCGGCTGCTAGATGTTCAATTTGGGGGTTCATCGTCAAGTTTGAAAATGGTTGCTGCATATTCAGATGGCAATGTCAAGCTCTATGAGCTACTTGATCCATTGGAGTTGAAGAACTGGCAGCTTCAGGCGGAAATTCAGAATGTTATTGATTCAGTATCTACACTTGGGAAAGCTGTGTGCTTATCCGCATCTATATCATGGAATCCAACAGGAGGAGAAAGCCAGGAATCAAGTTTTGTTTTGGGTTTCAATTCAGACACTCTACAACTTAATTCATCTAAGATATGGGAATTTGATCAAGCTCATCAAAGATGGCTCCCAGTTGCGGAATTGGCTTCTCCTAATGACAAGGGTGATCAGGTCTATGCGGTTGCCTGGGCACCAAACATTGGCAGGCCCTATGAGGTAATTGCTGCTGCCACTCAGAAGGGAATATCAATATGGCATCTTGGATTAAACCCTGACTCAGATGGAAGGCTCTCTTCAGAGAAGGTTGCACAACTTTCTGGTCACAAAGGCGAGGTCTGGCAACTGGAGTGGGACATGAGTGGAATGACATTGGCATCCACTGGGAACGATGGGGTAGTACGGTTGTGGCAGTCTAATTTGAATGGCACTTGGCATGAAGAAGCTACATTGGAACCCGCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

327

Amino Acids

35.52

Weight (kDa)

4.88

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 15 - 88 1.2e-07 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 203 - 310 2.6e-07 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 225 - 312 3.2e-07 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 229 - 310 4.9e-07 THOC3 beta-propeller domain
WD40 PF00400 273 - 309 3.7e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 709
AccB7I CCANNNNNTGG 1 cut(s) 719
AccII CGCG 1 cut(s) 115
AccIII TCCGGA 1 cut(s) 205
AciI CCGC 6 cut(s) 237, 458, 516, 656, 698, 975
AclI AACGTT 1 cut(s) 248
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 2 cut(s) 462, 620
AcuI CTGAAG 2 cut(s) 437, 798
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 1 cut(s) 918
AfiI CCNNNNNNNGG 4 cut(s) 212, 542, 655, 719
AgsI TTSAA 7 cut(s) 275, 293, 347, 373, 439, 580, 940
AjnI CCWGG 2 cut(s) 552, 704
AluBI AGCT 9 cut(s) 301, 312, 329, 409, 418, 451, 503, 632, 962
AluI AGCT 9 cut(s) 301, 312, 329, 409, 418, 451, 503, 632, 962
Alw21I GWGCWC 1 cut(s) 168
Alw44I GTGCAC 1 cut(s) 164
AlwI GGATC 1 cut(s) 419
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 61, 725
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 5 cut(s) 334, 383, 448, 743, 746
ApoI RAATTY 2 cut(s) 462, 620
ArsI GACNNNNNNTTYG 2 cut(s) 837, 869
Asp700I GAANNNNTTC 1 cut(s) 322
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 726
AsuHPI GGTGA 3 cut(s) 28, 91, 695
BaeGI GKGCMC 2 cut(s) 168, 712
BanI GGYRCC 1 cut(s) 709
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 5 cut(s) 321, 370, 460, 730, 733
BccI CCATC 6 cut(s) 110, 236, 389, 636, 794, 902
BciT130I CCWGG 2 cut(s) 554, 706
BclI TGATCA 2 cut(s) 625, 685
BfaI CTAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 5 cut(s) 335, 384, 449, 744, 747
BlsI GCNGC 5 cut(s) 336, 385, 450, 745, 748
Bme1390I CCNGG 2 cut(s) 554, 706
BmgT120I GGNCC 1 cut(s) 726
BmiI GGNNCC 6 cut(s) 34, 82, 201, 647, 711, 972
BmrFI CCNGG 2 cut(s) 554, 706
BmrI ACTGGG 2 cut(s) 644, 909
BmsI GCATC 4 cut(s) 268, 527, 784, 902
BmuI ACTGGG 2 cut(s) 644, 909
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 884
BsaJI CCNNGG 2 cut(s) 159, 705
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 542, 655, 719
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 4 cut(s) 449, 650, 867, 904
Bse3DI GCAATG 1 cut(s) 406
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 2 cut(s) 554, 706
BseDI CCNNGG 2 cut(s) 159, 705
BseGI GGATG 1 cut(s) 893
BseLI CCNNNNNNNGG 4 cut(s) 212, 542, 655, 719
BseMI GCAATG 1 cut(s) 406
BseMII CTCAG 2 cut(s) 767, 810
BseNI ACTGG 4 cut(s) 449, 650, 867, 904
BseRI GAGGAG 3 cut(s) 34, 133, 558
BseSI GKGCMC 2 cut(s) 168, 712
BseXI GCAGC 5 cut(s) 321, 370, 460, 730, 733
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 63, 727
BshNI GGYRCC 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 3 cut(s) 60, 78, 206
BslFI GGGAC 1 cut(s) 884
BslI CCNNNNNNNGG 4 cut(s) 212, 542, 655, 719
BsmFI GGGAC 1 cut(s) 884
BsnI GGCC 2 cut(s) 63, 727
Bsp1286I GDGCHC 2 cut(s) 168, 712
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 3 cut(s) 424, 625, 685
BspACI CCGC 6 cut(s) 237, 458, 516, 656, 698, 975
BspANI GGCC 2 cut(s) 63, 727
BspCNI CTCAG 2 cut(s) 766, 809
BspEI TCCGGA 1 cut(s) 205
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 6 cut(s) 34, 82, 201, 647, 711, 972
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 709
BsrDI GCAATG 1 cut(s) 406
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 4 cut(s) 449, 650, 867, 904
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 159, 705
BssMI GATC 3 cut(s) 424, 625, 685
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 554, 706
Bst4CI ACNGT 1 cut(s) 921
Bst6I CTCTTC 3 cut(s) 258, 294, 817
BstC8I GCNNGC 1 cut(s) 725
BstDEI CTNAG 4 cut(s) 609, 753, 796, 981
BstF5I GGATG 1 cut(s) 893
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 3 cut(s) 427, 628, 688
BstMBI GATC 3 cut(s) 424, 625, 685
BstMWI GCNNNNNNNGC 2 cut(s) 415, 662
BstNI CCWGG 2 cut(s) 554, 706
BstSCI CCNGG 2 cut(s) 552, 704
BstSLI GKGCMC 2 cut(s) 168, 712
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 5 cut(s) 321, 370, 460, 730, 733
BstV2I GAAGAC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 63, 727
BtsCI GGATG 1 cut(s) 893
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 228, 897
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 725
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 726
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 917
CspCI CAANNNNNGTGG 2 cut(s) 848, 883
CviAII CATG 3 cut(s) 528, 874, 953
CviQI GTAC 1 cut(s) 917
DdeI CTNAG 4 cut(s) 609, 753, 796, 981
DpnI GATC 3 cut(s) 426, 627, 687
DpnII GATC 3 cut(s) 424, 625, 685
DraIII CACNNNGTG 1 cut(s) 223
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 3 cut(s) 258, 294, 817
EarI CTCTTC 3 cut(s) 258, 294, 817
EciI GGCGGA 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 437, 798
EcoO109I RGGNCCY 1 cut(s) 726
EcoRII CCWGG 2 cut(s) 552, 704
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 531, 877, 956
FalI AAGNNNNNCTT 2 cut(s) 796, 828
FaqI GGGAC 1 cut(s) 884
FatI CATG 3 cut(s) 527, 873, 952
FauI CCCGC 1 cut(s) 982
FbaI TGATCA 2 cut(s) 625, 685
Fnu4HI GCNGC 5 cut(s) 335, 384, 449, 744, 747
FokI GGATG 1 cut(s) 880
Fsp4HI GCNGC 5 cut(s) 335, 384, 449, 744, 747
FspBI CTAG 1 cut(s) 338
GlaI GCGC 1 cut(s) 116
GluI GCNGC 5 cut(s) 335, 384, 449, 744, 747
GsuI CTGGAG 1 cut(s) 884
HaeIII GGCC 2 cut(s) 63, 727
HapII CCGG 3 cut(s) 60, 78, 206
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 531, 877, 956
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 310
HinfI GANTC 6 cut(s) 110, 323, 479, 532, 557, 794
HpaII CCGG 3 cut(s) 60, 78, 206
HphI GGTGA 3 cut(s) 28, 91, 695
Hpy166II GTNNAC 1 cut(s) 166
Hpy188I TCNGA 7 cut(s) 178, 394, 468, 586, 756, 799, 817
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 166
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 751, 798, 814
HpyCH4III ACNGT 1 cut(s) 921
HpyCH4IV ACGT 1 cut(s) 248
HpyCH4V TGCA 5 cut(s) 166, 281, 306, 386, 827
HpyF10VI GCNNNNNNNGC 2 cut(s) 415, 662
HpyF3I CTNAG 4 cut(s) 609, 753, 796, 981
HpySE526I ACGT 1 cut(s) 248
Hsp92II CATG 3 cut(s) 531, 877, 956
HspAI GCGC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 205
Ksp22I TGATCA 2 cut(s) 625, 685
Kzo9I GATC 3 cut(s) 424, 625, 685
LmnI GCTCC 3 cut(s) 47, 86, 651
Lsp1109I GCAGC 5 cut(s) 321, 370, 460, 730, 733
LweI GCATC 4 cut(s) 268, 527, 784, 902
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 248
MaeIII GTNAC 3 cut(s) 16, 215, 839
MalI GATC 3 cut(s) 426, 627, 687
MboI GATC 3 cut(s) 424, 625, 685
MhlI GDGCHC 2 cut(s) 168, 712
MluCI AATT 8 cut(s) 347, 462, 580, 601, 620, 659, 738, 934
MlyI GAGTC 2 cut(s) 104, 788
MmeI TCCRAC 1 cut(s) 560
MroI TCCGGA 1 cut(s) 205
MroXI GAANNNNTTC 1 cut(s) 322
MseI TTAA 2 cut(s) 600, 785
MspI CCGG 3 cut(s) 60, 78, 206
MspR9I CCNGG 2 cut(s) 554, 706
MvaI CCWGG 2 cut(s) 554, 706
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 415, 662
NdeII GATC 3 cut(s) 424, 625, 685
NlaIII CATG 3 cut(s) 531, 877, 956
NlaIV GGNNCC 6 cut(s) 34, 82, 201, 647, 711, 972
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 3 cut(s) 16, 215, 839
PaqCI CACCTGC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 322
PfeI GAWTC 4 cut(s) 323, 479, 532, 557
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 5 cut(s) 336, 385, 450, 745, 748
PleI GAGTC 2 cut(s) 104, 788
PpsI GAGTC 2 cut(s) 104, 788
Psp1406I AACGTT 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 552, 704
PspGI CCWGG 2 cut(s) 552, 704
PspN4I GGNNCC 6 cut(s) 34, 82, 201, 647, 711, 972
PspPI GGNCC 1 cut(s) 726
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 1 cut(s) 918
RsaNI GTAC 1 cut(s) 917
SaqAI TTAA 2 cut(s) 600, 785
SatI GCNGC 5 cut(s) 335, 384, 449, 744, 747
Sau3AI GATC 3 cut(s) 424, 625, 685
Sau96I GGNCC 1 cut(s) 726
SchI GAGTC 2 cut(s) 104, 788
ScrFI CCNGG 2 cut(s) 554, 706
SduI GDGCHC 2 cut(s) 168, 712
SfaNI GCATC 4 cut(s) 268, 527, 784, 902
Sse9I AATT 8 cut(s) 347, 462, 580, 601, 620, 659, 738, 934
SsiI CCGC 6 cut(s) 237, 458, 516, 656, 698, 975
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 552, 704
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 921
TaiI ACGT 1 cut(s) 251
TaqI TCGA 3 cut(s) 24, 87, 108
TaqII GACCGA 1 cut(s) 203
TasI AATT 8 cut(s) 347, 462, 580, 601, 620, 659, 738, 934
TfiI GAWTC 4 cut(s) 323, 479, 532, 557
Tru1I TTAA 2 cut(s) 600, 785
Tru9I TTAA 2 cut(s) 600, 785
TscAI CASTG 2 cut(s) 228, 904
TseFI GTSAC 3 cut(s) 16, 215, 839
TseI GCWGC 5 cut(s) 334, 383, 448, 743, 746
Tsp45I GTSAC 3 cut(s) 16, 215, 839
TspDTI ATGAA 3 cut(s) 348, 594, 969
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 2 cut(s) 228, 904
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 719
VneI GTGCAC 1 cut(s) 164
XapI RAATTY 2 cut(s) 462, 620
XmnI GAANNNNTTC 1 cut(s) 322
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.