Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000558

Physical Location & Seq

Genomic Coordinates Forward (+)

15174249 .. 15175041

Gene Structure 793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTCGATCAGGTCTATGCAGTTGCATGGGCACCAAACATTGGAAGGCCATATGAGGTAATTGCTGTTGCCACTCACAAGGGAATATCAATGTGGCATCTTGGGTTAAACCCTGACTTGGATGGAAGGCTCTCATTGGAGAAGATTGCACAACTTTCAGGTCACAAAGGCGAGGTCTGGCAGATGGAATGGGACATGAGTGGAATGACGTTGGCAACCACCGGAAATGATGGGGCTGTACGGTTGTGGCAGTCTAGTTTGAACGGAGTTTGGCATGAAGAGGCTACTTTTGAACCCACTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000323 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0006996 GO:0006997 GO:0006999 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0022402 GO:0031080 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0071840 GO:0098588 GO:0098805 GO:0098813 GO:0098852 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 ko04150 map03013 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

102

Amino Acids

11.29

Weight (kDa)

4.94

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	5 - 84	4.6e-07	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	44 - 86	1.4e-06	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	45 - 84	3.2e-06	WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	46 - 86	6.6e-06	WDR3 second beta-propeller domain
WD40	PF00400	48 - 83	1.8e-06	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64350
fragaria_vesca	FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica	MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica	Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis	pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis	RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata	RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora	Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa	Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha	Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana	Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	41, 118
AgsI	TTSAA	2 cut(s)	262, 293
AoxI	GGCC	1 cut(s)	47
ArsI	GACNNNNNNTTYG	2 cut(s)	159, 191
BaeGI	GKGCMC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	31
BccI	CCATC	3 cut(s)	116, 178, 224
BfaI	CTAG	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 118
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	2 cut(s)	41, 118
BseSI	GKGCMC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	2 cut(s)	41, 118
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	7
BspANI	GGCC	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	33
BspT107I	GGYRCC	1 cut(s)	31
BssMI	GATC	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstSLI	GKGCMC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	3 cut(s)	27, 196, 275
CviJI	RGCY	4 cut(s)	49, 130, 236, 284
CviKI_1	RGCY	4 cut(s)	49, 130, 236, 284
CviQI	GTAC	1 cut(s)	239
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
FaeI	CATG	3 cut(s)	30, 199, 278
FaiI	YATR	6 cut(s)	18, 28, 52, 54, 197, 276
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	3 cut(s)	26, 195, 274
FauNDI	CATATG	1 cut(s)	52
FokI	GGATG	1 cut(s)	134
FspBI	CTAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	3 cut(s)	30, 199, 278
HpaII	CCGG	1 cut(s)	222
HpyAV	CCTTC	2 cut(s)	39, 120
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	3 cut(s)	20, 26, 149
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	30, 199, 278
Kzo9I	GATC	1 cut(s)	7
LpnPI	CCDG	4 cut(s)	126, 144, 163, 235
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	2 cut(s)	154, 290
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	1 cut(s)	60
MnlI	CCTC	3 cut(s)	49, 166, 274
MseI	TTAA	1 cut(s)	107
MspI	CCGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	52
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	3 cut(s)	30, 199, 278
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	41
PspN4I	GGNNCC	1 cut(s)	33
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	7
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	5 cut(s)	15, 60, 163, 177, 212
SfaNI	GCATC	1 cut(s)	106
Sse9I	AATT	1 cut(s)	60
SspMI	CTAG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	6
TasI	AATT	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	279
Van91I	CCANNNNNTGG	1 cut(s)	41
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.