Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000558

Physical Location & Seq

Genomic Coordinates Forward (+)

2505683 .. 2508899

Gene Structure 3217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04211.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGAAATCTCTAGTGACCCTCGAGAAAGGAACCACCTGCTCCTCTTGGAACTACTCCGGCCAGAGACTCGCCACCGGCTCCCTTGACGGAACTCTCACCATCTTCGACTCCCCCAACCCTTCTTCTTCCTCTTTCTCCTCCTCCTCAAAACTCAAGGTGCATCACGCTTCCGGCGTTGTGAAGGTTGTTTGGGTTCCGCCGCAGTTCGGTCACGCCGTGGCGTGTGTTTGTGCTGATGGAACATTGTCTTTGTGGGAAGAGACTGTTGAAGACGCACAACCTGTTCAATGGAAGCTGTGCAAAAGCTTCAAAAGTGATTCAGCTCAGATGCTAGATGTTGAGTTTGGAAGTTCGTCGTCGAGTTTGAAGATGGTAACCGCGTATTCAGACGGCAGTGTCAAAATCTATGAACTACTCGATCCCTTGGAATTGAAGAACTGGCAGCTGCAGGCGGAAATTCAGAATGTTATTGATTCAGTGTCTACACTTGGGAAAGCTGTGTGCTTACAGGCATCTATATCATGGAACCCAAGAGGAGGAGAAAGCCAGGAAACAAGTTTTGTTTTGGGTTTTAATTCAGACACACAACAACTTAATTCCTCAAAGGTATGGGAATTTGATCAAGCTCATCAAAGATGGCTTCCAGTTGCAGAATTGGCTTCTCCTGATGAGAAGGGTGTTCAGGTCTATGCTGTTGCTTGGGCACCAAACATTGGCAGGCCCTATGAGGTCATTGCTGTTGCCACTCACAAGGGAATATCAATATGGCATCTTGGATTAAACCCTGACTCAGATGGAAGGCTCTCTACAGAGAAAGTTGCACAACTTACTGGTCACAAAGGCGAGGTCTGGCAACTGGAGTGGGACATGAGTGGAATGACATTGGCGTCCACTGGGAGCGATGGGGTAGTACGGTTGTGGCAGTCTAATTTGAATGGCGTTTGGCATGAAGAAGCTACACTGGAACCCGCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000323 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0006996 GO:0006997 GO:0006999 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0022402 GO:0031080 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0071840 GO:0098588 GO:0098805 GO:0098813 GO:0098852 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 ko04150 map03013 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

327

Amino Acids

35.54

Weight (kDa)

4.96

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	9 - 139	3.4e-06	WDR5 beta-propeller domain
Beta-prop_THOC3	PF25174	15 - 87	1.1e-08	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64350
fragaria_vesca	FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica	MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica	Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis	pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis	RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata	RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora	Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa	Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha	Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana	Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
AasI	GACNNNNNNGTC	2 cut(s)	398, 889
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	706
AccB7I	CCANNNNNTGG	1 cut(s)	716
AccI	GTMKAC	1 cut(s)	485
AccII	CGCG	1 cut(s)	383
AciI	CCGC	5 cut(s)	200, 203, 381, 455, 972
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	459, 617
AcyI	GRCGYC	1 cut(s)	890
AdeI	CACNNNGTG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	915
AfiI	CCNNNNNNNGG	3 cut(s)	209, 539, 716
AgsI	TTSAA	6 cut(s)	272, 290, 313, 370, 436, 937
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	7 cut(s)	298, 309, 326, 448, 500, 629, 959
AluI	AGCT	7 cut(s)	298, 309, 326, 448, 500, 629, 959
Alw26I	GTCTC	2 cut(s)	61, 257
AlwI	GGATC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	61, 722
ApeKI	GCWGC	2 cut(s)	445, 448
ApoI	RAATTY	2 cut(s)	459, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	834, 866
AspS9I	GGNCC	1 cut(s)	723
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	709
BanI	GGYRCC	1 cut(s)	706
BarI	GAAGNNNNNNTAC	2 cut(s)	793, 825
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	435, 457
BccI	CCATC	6 cut(s)	110, 233, 367, 633, 791, 899
BceAI	ACGGC	2 cut(s)	203, 409
BciT130I	CCWGG	1 cut(s)	551
BclI	TGATCA	1 cut(s)	622
BcoDI	GTCTC	2 cut(s)	61, 257
BfaI	CTAG	3 cut(s)	14, 335, 979
BfmI	CTRYAG	2 cut(s)	449, 810
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	203, 446, 449
BlsI	GCNGC	3 cut(s)	204, 447, 450
Bme1390I	CCNGG	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	723
BmiI	GGNNCC	6 cut(s)	34, 82, 198, 530, 708, 969
BmrFI	CCNGG	1 cut(s)	551
BmrI	ACTGGG	1 cut(s)	906
BmsI	GCATC	4 cut(s)	172, 321, 524, 781
BmuI	ACTGGG	1 cut(s)	906
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	881
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	890
BsaJI	CCNNGG	2 cut(s)	219, 426
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 539, 716
Bse118I	RCCGGY	1 cut(s)	77
Bse1I	ACTGG	6 cut(s)	446, 647, 838, 864, 901, 969
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	551
BseDI	CCNNGG	2 cut(s)	219, 426
BseLI	CCNNNNNNNGG	3 cut(s)	209, 539, 716
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	341, 807
BseNI	ACTGG	6 cut(s)	446, 647, 838, 864, 901, 969
BseRI	GAGGAG	6 cut(s)	34, 130, 133, 136, 552, 555
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	2 cut(s)	435, 457
Bsh1236I	CGCG	1 cut(s)	383
BshFI	GGCC	2 cut(s)	63, 724
BshNI	GGYRCC	1 cut(s)	706
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	3 cut(s)	60, 78, 174
BslFI	GGGAC	1 cut(s)	881
BslI	CCNNNNNNNGG	3 cut(s)	209, 539, 716
BsmAI	GTCTC	2 cut(s)	61, 257
BsmFI	GGGAC	1 cut(s)	881
BsnI	GGCC	2 cut(s)	63, 724
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	2 cut(s)	421, 622
BspACI	CCGC	5 cut(s)	200, 203, 381, 455, 972
BspANI	GGCC	2 cut(s)	63, 724
BspCNI	CTCAG	2 cut(s)	340, 806
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	6 cut(s)	34, 82, 198, 530, 708, 969
BspMAI	CTGCAG	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	416
BspT107I	GGYRCC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	77
BsrI	ACTGG	6 cut(s)	446, 647, 838, 864, 901, 969
BssAI	RCCGGY	1 cut(s)	77
BssECI	CCNNGG	2 cut(s)	219, 426
BssMI	GATC	2 cut(s)	421, 622
BssNI	GRCGYC	1 cut(s)	890
BssT1I	CCWWGG	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	268, 918
Bst6I	CTCTTC	1 cut(s)	255
BstACI	GRCGYC	1 cut(s)	890
BstC8I	GCNNGC	2 cut(s)	453, 722
BstDEI	CTNAG	2 cut(s)	327, 793
BstDSI	CCRYGG	1 cut(s)	219
BstEII	GGTNACC	1 cut(s)	376
BstFNI	CGCG	1 cut(s)	383
BstKTI	GATC	2 cut(s)	424, 625
BstMAI	GTCTC	2 cut(s)	61, 257
BstMBI	GATC	2 cut(s)	421, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	659
BstNI	CCWGG	1 cut(s)	551
BstPI	GGTNACC	1 cut(s)	376
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	2 cut(s)	449, 810
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	435, 457
BstV2I	GAAGAC	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	63, 724
BtgI	CCRYGG	1 cut(s)	219
BtgZI	GCGATG	1 cut(s)	918
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	4 cut(s)	403, 486, 894, 962
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	2 cut(s)	453, 722
Cfr10I	RCCGGY	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	723
CseI	GACGC	2 cut(s)	284, 879
Csp6I	GTAC	1 cut(s)	914
CspCI	CAANNNNNGTGG	2 cut(s)	845, 880
CviAII	CATG	3 cut(s)	525, 871, 950
CviQI	GTAC	1 cut(s)	914
DdeI	CTNAG	2 cut(s)	327, 793
DpnI	GATC	2 cut(s)	423, 624
DpnII	GATC	2 cut(s)	421, 622
DraIII	CACNNNGTG	1 cut(s)	220
DrdI	GACNNNNNNGTC	2 cut(s)	398, 889
DseDI	GACNNNNNNGTC	2 cut(s)	398, 889
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EciI	GGCGGA	2 cut(s)	189, 470
Eco130I	CCWWGG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	23
Eco91I	GGTNACC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	723
EcoO65I	GGTNACC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	528, 874, 953
FaiI	YATR	9 cut(s)	411, 521, 526, 613, 693, 729, 769, 872, 951
FaqI	GGGAC	1 cut(s)	881
FatI	CATG	3 cut(s)	524, 870, 949
FauI	CCCGC	1 cut(s)	979
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	3 cut(s)	203, 446, 449
Fsp4HI	GCNGC	3 cut(s)	203, 446, 449
FspBI	CTAG	3 cut(s)	14, 335, 979
GluI	GCNGC	3 cut(s)	203, 446, 449
GsuI	CTGGAG	1 cut(s)	881
HaeIII	GGCC	2 cut(s)	63, 724
HapII	CCGG	3 cut(s)	60, 78, 174
HgaI	GACGC	2 cut(s)	284, 879
Hin1I	GRCGYC	1 cut(s)	890
Hin1II	CATG	3 cut(s)	528, 874, 953
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	5 cut(s)	69, 110, 320, 476, 791
HpaII	CCGG	3 cut(s)	60, 78, 174
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	486, 894
Hpy188I	TCNGA	5 cut(s)	330, 391, 465, 583, 796
Hpy188III	TCNNGA	2 cut(s)	25, 668
Hpy8I	GTNNAC	2 cut(s)	486, 894
Hpy99I	CGWCG	2 cut(s)	361, 364
HpyAV	CCTTC	4 cut(s)	132, 178, 670, 795
HpyCH4III	ACNGT	2 cut(s)	268, 918
HpyCH4V	TGCA	5 cut(s)	163, 303, 451, 653, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	659
HpyF3I	CTNAG	2 cut(s)	327, 793
Hsp92I	GRCGYC	1 cut(s)	890
Hsp92II	CATG	3 cut(s)	528, 874, 953
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	421, 622
LmnI	GCTCC	3 cut(s)	47, 86, 900
Lsp1109I	GCAGC	2 cut(s)	435, 457
LweI	GCATC	4 cut(s)	172, 321, 524, 781
MaeI	CTAG	3 cut(s)	14, 335, 979
MaeIII	GTNAC	4 cut(s)	16, 212, 376, 836
MalI	GATC	2 cut(s)	423, 624
MboI	GATC	2 cut(s)	421, 622
MboII	GAAGA	8 cut(s)	97, 117, 120, 272, 284, 382, 448, 965
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	7 cut(s)	431, 459, 577, 598, 617, 656, 931
MlyI	GAGTC	3 cut(s)	63, 104, 785
MseI	TTAA	3 cut(s)	576, 597, 782
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	3 cut(s)	60, 78, 174
MspR9I	CCNGG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	551
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	659
NdeII	GATC	2 cut(s)	421, 622
NlaIII	CATG	3 cut(s)	528, 874, 953
NlaIV	GGNNCC	6 cut(s)	34, 82, 198, 530, 708, 969
NmuCI	GTSAC	3 cut(s)	16, 212, 836
PaeR7I	CTCGAG	1 cut(s)	23
PaqCI	CACCTGC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 216
PfeI	GAWTC	2 cut(s)	320, 476
PflMI	CCANNNNNTGG	1 cut(s)	716
PkrI	GCNGC	3 cut(s)	204, 447, 450
PleI	GAGTC	3 cut(s)	63, 104, 785
PpsI	GAGTC	3 cut(s)	63, 104, 785
Psp6I	CCWGG	1 cut(s)	549
PspEI	GGTNACC	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	6 cut(s)	34, 82, 198, 530, 708, 969
PspPI	GGNCC	1 cut(s)	723
PstI	CTGCAG	1 cut(s)	453
PvuII	CAGCTG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	915
RsaNI	GTAC	1 cut(s)	914
SaqAI	TTAA	3 cut(s)	576, 597, 782
SatI	GCNGC	3 cut(s)	203, 446, 449
Sau3AI	GATC	2 cut(s)	421, 622
Sau96I	GGNCC	1 cut(s)	723
SchI	GAGTC	3 cut(s)	63, 104, 785
ScrFI	CCNGG	1 cut(s)	551
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	4 cut(s)	172, 321, 524, 781
SfcI	CTRYAG	2 cut(s)	449, 810
Sfr274I	CTCGAG	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	23
SmlI	CTYRAG	2 cut(s)	23, 155
SmoI	CTYRAG	2 cut(s)	23, 155
Sse9I	AATT	7 cut(s)	431, 459, 577, 598, 617, 656, 931
SsiI	CCGC	5 cut(s)	200, 203, 381, 455, 972
SspMI	CTAG	3 cut(s)	14, 335, 979
StyD4I	CCNGG	1 cut(s)	549
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	2 cut(s)	268, 918
TaqI	TCGA	4 cut(s)	24, 108, 362, 420
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	7 cut(s)	431, 459, 577, 598, 617, 656, 931
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	2 cut(s)	320, 476
Tru1I	TTAA	3 cut(s)	576, 597, 782
Tru9I	TTAA	3 cut(s)	576, 597, 782
TscAI	CASTG	4 cut(s)	403, 486, 901, 969
TseFI	GTSAC	3 cut(s)	16, 212, 836
TseI	GCWGC	2 cut(s)	445, 448
Tsp45I	GTSAC	3 cut(s)	16, 212, 836
TspDTI	ATGAA	2 cut(s)	426, 966
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	4 cut(s)	403, 486, 901, 969
Van91I	CCANNNNNTGG	1 cut(s)	716
XapI	RAATTY	2 cut(s)	459, 617
XhoI	CTCGAG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	485
XspI	CTAG	3 cut(s)	14, 335, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.