Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0000558

Physical Location & Seq

Genomic Coordinates Forward (+)

15172326 .. 15174194

Gene Structure 1869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g09830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGAAACCATTGGTGGCGCTTGATAAAGGCACCATCTGCTCGTCGTGGAACTACTCCGGCCAGAGATTAGCCAGTGGTTCCGTCGACGGAACCCTCGCCATCTTCGACTCACGCGACTCTTGTTCTTCGTCCTTCTCCTGCACCTCAAAATCCAAGGTGCACGAGGCTGCTGGAATTGTGAAAATTGCTTGGGTTCCACCGGAATTCGGCGATGCAGTGGCGTGTGTATGTGCAGATGGGACCTTATCATTGTGGGAGGAAGTTGCTGAAGATGCACAACCTCTTCAATGGAAGCTGTGCACAAGCTTTAATAGCGGTTCAGCTCAACTGCTAGATACCCAATTTGGAGTCTCACCGGCAGGTTTAAAAATGAGGTTACTGCAAATTCAGATGCCCGTGTCAAGGTCTATGAGCTACTGGATCGATCACGAGCCCTTGGAACTGAAGAATTGGCAGCTTCAGGCTGAATTTCAGAATGTTATTGATTCGGTGTCTACAGTTGGCCATGCCATATGCTTATCTGCATCTATATCTTGGAATCCACAAAGAGGAGAAAGCCAGGAATCAAGTTTTGTTTTGGGTTTCAATTCAAACACACCACAACTTAATTCCGCCAAGAAATGTATGGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000323 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0006996 GO:0006997 GO:0006999 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0022402 GO:0031080 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0071840 GO:0098588 GO:0098805 GO:0098813 GO:0098852 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 ko04150 map03013 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

213

Amino Acids

22.99

Weight (kDa)

5.02

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	16 - 87	3e-08	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64350
fragaria_vesca	FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica	MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica	Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis	pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis	RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata	RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora	Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa	Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha	Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana	Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	32
AccI	GTMKAC	2 cut(s)	87, 497
AccII	CGCG	1 cut(s)	117
AciI	CCGC	2 cut(s)	318, 615
AclWI	GGATC	1 cut(s)	431
AcoI	YGGCCR	2 cut(s)	61, 505
AcsI	RAATTY	4 cut(s)	206, 387, 470, 633
AcuI	CTGAAG	3 cut(s)	291, 446, 467
AfiI	CCNNNNNNNGG	3 cut(s)	209, 405, 551
AgsI	TTSAA	3 cut(s)	290, 589, 594
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	5 cut(s)	298, 309, 326, 417, 460
AluI	AGCT	5 cut(s)	298, 309, 326, 417, 460
Alw21I	GWGCWC	2 cut(s)	165, 305
Alw26I	GTCTC	1 cut(s)	358
Alw44I	GTGCAC	2 cut(s)	161, 301
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	2 cut(s)	61, 505
ApaLI	GTGCAC	2 cut(s)	161, 301
ApeKI	GCWGC	2 cut(s)	170, 457
ApoI	RAATTY	4 cut(s)	206, 387, 470, 633
AspLEI	GCGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	243
BaeGI	GKGCMC	2 cut(s)	165, 305
BalI	TGGCCA	1 cut(s)	507
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	1 cut(s)	438
BauI	CACGAG	2 cut(s)	164, 431
Bbv12I	GWGCWC	2 cut(s)	165, 305
BbvI	GCAGC	2 cut(s)	157, 469
BccI	CCATC	3 cut(s)	44, 110, 233
BciT130I	CCWGG	1 cut(s)	563
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	1 cut(s)	335
BfmI	CTRYAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	2 cut(s)	171, 458
BlsI	GCNGC	2 cut(s)	172, 459
Bme1390I	CCNGG	1 cut(s)	563
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	5 cut(s)	34, 82, 94, 198, 244
BmrFI	CCNGG	1 cut(s)	563
BmsI	GCATC	4 cut(s)	205, 265, 384, 536
Bsa29I	ATCGAT	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	156, 438
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	3 cut(s)	209, 405, 551
Bse118I	RCCGGY	1 cut(s)	358
Bse1I	ACTGG	2 cut(s)	75, 425
BseBI	CCWGG	1 cut(s)	563
BseCI	ATCGAT	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	156, 438
BseLI	CCNNNNNNNGG	3 cut(s)	209, 405, 551
BseNI	ACTGG	2 cut(s)	75, 425
BseRI	GAGGAG	1 cut(s)	567
BseSI	GKGCMC	2 cut(s)	165, 305
BseXI	GCAGC	2 cut(s)	157, 469
BsgI	GTGCAG	2 cut(s)	127, 255
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	63, 507
BshNI	GGYRCC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	426
BsiHKAI	GWGCWC	2 cut(s)	165, 305
BsiSI	CCGG	3 cut(s)	60, 203, 359
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	3 cut(s)	209, 405, 551
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	2 cut(s)	63, 507
Bsp1286I	GDGCHC	3 cut(s)	165, 305, 438
Bsp143I	GATC	2 cut(s)	423, 427
BspACI	CCGC	2 cut(s)	318, 615
BspANI	GGCC	2 cut(s)	63, 507
BspDI	ATCGAT	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	5 cut(s)	34, 82, 94, 198, 244
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	431
BspT107I	GGYRCC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	75, 425
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	156, 438
BssMI	GATC	2 cut(s)	423, 427
BssSI	CACGAG	2 cut(s)	164, 431
BssT1I	CCWWGG	2 cut(s)	156, 438
Bst2BI	CACGAG	2 cut(s)	164, 431
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	1 cut(s)	502
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	22
BstKTI	GATC	2 cut(s)	426, 430
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	423, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 275, 315
BstNI	CCWGG	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	561
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	2 cut(s)	165, 305
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	157, 469
Bsu15I	ATCGAT	1 cut(s)	426
BsuRI	GGCC	2 cut(s)	63, 507
BsuTUI	ATCGAT	1 cut(s)	426
BtgZI	GCGATG	1 cut(s)	228
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	82, 225
BveI	ACCTGC	1 cut(s)	353
CfoI	GCGC	1 cut(s)	22
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	426
CviAII	CATG	1 cut(s)	509
DpnI	GATC	2 cut(s)	425, 429
DpnII	GATC	2 cut(s)	423, 427
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	61, 505
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
EciI	GGCGGA	1 cut(s)	604
Eco130I	CCWWGG	2 cut(s)	156, 438
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	3 cut(s)	291, 446, 467
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	2 cut(s)	156, 438
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	2 cut(s)	156, 438
FaeI	CATG	1 cut(s)	512
FaiI	YATR	7 cut(s)	232, 413, 510, 515, 517, 533, 629
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	508
FauNDI	CATATG	1 cut(s)	515
FblI	GTMKAC	2 cut(s)	87, 497
Fnu4HI	GCNGC	2 cut(s)	171, 458
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	171, 458
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	21
GluI	GCNGC	2 cut(s)	171, 458
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	2 cut(s)	63, 507
HapII	CCGG	3 cut(s)	60, 203, 359
HhaI	GCGC	1 cut(s)	22
Hin1II	CATG	1 cut(s)	512
Hin6I	GCGC	1 cut(s)	20
HinP1I	GCGC	1 cut(s)	20
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	6 cut(s)	110, 119, 351, 488, 541, 566
HpaII	CCGG	3 cut(s)	60, 203, 359
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	4 cut(s)	88, 163, 303, 498
Hpy188I	TCNGA	2 cut(s)	393, 477
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	4 cut(s)	88, 163, 303, 498
Hpy99I	CGWCG	3 cut(s)	49, 89, 92
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	502
HpyCH4V	TGCA	8 cut(s)	144, 163, 218, 236, 278, 303, 385, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 275, 315
Hsp92II	CATG	1 cut(s)	512
HspAI	GCGC	1 cut(s)	20
Kzo9I	GATC	2 cut(s)	423, 427
Lsp1109I	GCAGC	2 cut(s)	157, 469
LweI	GCATC	4 cut(s)	205, 265, 384, 536
MaeI	CTAG	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	378
MalI	GATC	2 cut(s)	425, 429
MboI	GATC	2 cut(s)	423, 427
MboII	GAAGA	5 cut(s)	97, 120, 278, 284, 460
MhlI	GDGCHC	3 cut(s)	165, 305, 438
MlsI	TGGCCA	1 cut(s)	507
MluNI	TGGCCA	1 cut(s)	507
MlyI	GAGTC	3 cut(s)	104, 113, 360
MnlI	CCTC	7 cut(s)	107, 157, 160, 253, 294, 369, 545
Mox20I	TGGCCA	1 cut(s)	507
MscI	TGGCCA	1 cut(s)	507
MseI	TTAA	3 cut(s)	312, 368, 609
Msp20I	TGGCCA	1 cut(s)	507
MspI	CCGG	3 cut(s)	60, 203, 359
MspR9I	CCNGG	1 cut(s)	563
MvaI	CCWGG	1 cut(s)	563
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	3 cut(s)	39, 275, 315
NdeI	CATATG	1 cut(s)	515
NdeII	GATC	2 cut(s)	423, 427
NlaIII	CATG	1 cut(s)	512
NlaIV	GGNNCC	5 cut(s)	34, 82, 94, 198, 244
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 114
PfeI	GAWTC	3 cut(s)	488, 541, 566
PkrI	GCNGC	2 cut(s)	172, 459
PleI	GAGTC	3 cut(s)	104, 113, 359
PpsI	GAGTC	3 cut(s)	104, 113, 359
PpuMI	RGGWCCY	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	5 cut(s)	34, 82, 94, 198, 244
PspPI	GGNCC	1 cut(s)	243
PspPPI	RGGWCCY	1 cut(s)	243
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	312, 368, 609
SatI	GCNGC	2 cut(s)	171, 458
Sau3AI	GATC	2 cut(s)	423, 427
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	3 cut(s)	104, 113, 360
ScrFI	CCNGG	1 cut(s)	563
SduI	GDGCHC	3 cut(s)	165, 305, 438
SfaNI	GCATC	4 cut(s)	205, 265, 384, 536
SfcI	CTRYAG	1 cut(s)	498
SgrDI	CGTCGACG	1 cut(s)	86
SinI	GGWCC	1 cut(s)	243
SsiI	CCGC	2 cut(s)	318, 615
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	561
StyI	CCWWGG	2 cut(s)	156, 438
TaaI	ACNGT	1 cut(s)	502
TaqI	TCGA	3 cut(s)	87, 108, 426
TfiI	GAWTC	3 cut(s)	488, 541, 566
Tru1I	TTAA	3 cut(s)	312, 368, 609
Tru9I	TTAA	3 cut(s)	312, 368, 609
TscAI	CASTG	2 cut(s)	82, 225
TseI	GCWGC	2 cut(s)	170, 457
TspGWI	ACGGA	2 cut(s)	73, 105
TspRI	CASTG	2 cut(s)	82, 225
VneI	GTGCAC	2 cut(s)	161, 301
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	4 cut(s)	206, 387, 470, 633
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XmiI	GTMKAC	2 cut(s)	87, 497
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.