Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000558

Physical Location & Seq

Genomic Coordinates Forward (+)

25504332 .. 25504966

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1116200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGTTATTGCATATTCAGATGCCCGTGTCAAGTTTTATGAGTTATTGAATCCCTTGGAACTGAAGAATTGGCAGCTTCAGGCTGAATTTCGGAGTTTTATTGATTCGGTGTCTATAGTTGGCCATGCCATATGCTTATCTGCATCTATATCTTGGAATCCACAAAGAGGAGAAAGCCAGGAATCAAGTATATGCAATTGCGTGGGCACCAACATTGGAAGGCCATATGAGGTAATTGTTGTTACCACTTACAAGGGAATATCAATATGGCATCTTGGGTTAAACCCTGACTTGGATGGAAGGCTATCATTGGAGAAAATTGCACTACTTTCAGGTCACAAAGGCGAGGTTTGGCAGATGGAATGCGACATGAGCGGAATGACGTTGGCAACCACCGGAAATGATGGGGCTGTACGGTTGTGGCAGTCTAGTTTGAACGGAGTTTGCCATGAACAGGCTACTTTTGAACCCACTTCGTTTTCCCTCTGGTTTTACATGTTACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000323 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0006996 GO:0006997 GO:0006999 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0022402 GO:0031080 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0071840 GO:0098588 GO:0098805 GO:0098813 GO:0098852 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 ko04150 map03013 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

169

Amino Acids

18.78

Weight (kDa)

5.11

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	83 - 150	6.7e-06	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64350
fragaria_vesca	FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica	MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica	Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis	pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis	RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata	RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora	Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa	Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha	Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana	Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	375
AciI	CCGC	1 cut(s)	375
AcoI	YGGCCR	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	2 cut(s)	62, 83
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	3 cut(s)	167, 292, 454
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	3 cut(s)	49, 436, 467
AjnI	CCWGG	1 cut(s)	177
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AoxI	GGCC	2 cut(s)	121, 221
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	86
BaeGI	GKGCMC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	3 cut(s)	290, 352, 398
BciT130I	CCWGG	1 cut(s)	179
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	75
Bme1390I	CCNGG	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	179
BmsI	GCATC	3 cut(s)	10, 152, 280
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 292, 454
BseBI	CCWGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	3 cut(s)	167, 292, 454
BseRI	GAGGAG	1 cut(s)	183
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	123, 223
BshNI	GGYRCC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	396
BslI	CCNNNNNNNGG	3 cut(s)	167, 292, 454
BsmI	GAATGC	1 cut(s)	368
BsnI	GGCC	2 cut(s)	123, 223
Bsp1286I	GDGCHC	1 cut(s)	209
BspACI	CCGC	1 cut(s)	375
BspANI	GGCC	2 cut(s)	123, 223
BspLI	GGNNCC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	375
BssECI	CCNNGG	1 cut(s)	54
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	179
Bst4CI	ACNGT	2 cut(s)	417, 504
BstF5I	GGATG	1 cut(s)	301
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNI	CCWGG	1 cut(s)	179
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	177
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	209
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	123, 223
BtsCI	GGATG	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	4 cut(s)	125, 370, 449, 496
CviJI	RGCY	8 cut(s)	76, 83, 123, 177, 223, 304, 410, 458
CviKI_1	RGCY	8 cut(s)	76, 83, 123, 177, 223, 304, 410, 458
CviQI	GTAC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	54
Eco57I	CTGAAG	2 cut(s)	62, 83
EcoRII	CCWGG	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	4 cut(s)	128, 373, 452, 499
FatI	CATG	4 cut(s)	124, 369, 448, 495
FauNDI	CATATG	2 cut(s)	131, 226
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	1 cut(s)	74
HaeIII	GGCC	2 cut(s)	123, 223
HapII	CCGG	1 cut(s)	396
Hin1II	CATG	4 cut(s)	128, 373, 452, 499
HinfI	GANTC	4 cut(s)	49, 104, 157, 182
HpaII	CCGG	1 cut(s)	396
Hpy188I	TCNGA	2 cut(s)	19, 93
HpyAV	CCTTC	2 cut(s)	213, 294
HpyCH4III	ACNGT	2 cut(s)	417, 504
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	4 cut(s)	11, 143, 195, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	383
Hsp92II	CATG	4 cut(s)	128, 373, 452, 499
LpnPI	CCDG	8 cut(s)	65, 164, 191, 300, 318, 409, 440, 472
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	3 cut(s)	10, 152, 280
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	383
MaeIII	GTNAC	3 cut(s)	241, 335, 498
MbiI	CCGCTC	1 cut(s)	375
MboII	GAAGA	1 cut(s)	76
MfeI	CAATTG	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	209
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	5 cut(s)	67, 86, 196, 234, 318
MluNI	TGGCCA	1 cut(s)	123
MnlI	CCTC	4 cut(s)	161, 223, 340, 494
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	1 cut(s)	281
Msp20I	TGGCCA	1 cut(s)	123
MspI	CCGG	1 cut(s)	396
MspR9I	CCNGG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	372
NdeI	CATATG	2 cut(s)	131, 226
NlaIII	CATG	4 cut(s)	128, 373, 452, 499
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	1 cut(s)	499
PciI	ACATGT	1 cut(s)	495
PctI	GAATGC	1 cut(s)	368
PfeI	GAWTC	4 cut(s)	49, 104, 157, 182
PkrI	GCNGC	1 cut(s)	75
PscI	ACATGT	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	208
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	179
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	5 cut(s)	78, 234, 337, 351, 386
SfaNI	GCATC	3 cut(s)	10, 152, 280
SfcI	CTRYAG	1 cut(s)	114
Sse9I	AATT	5 cut(s)	67, 86, 196, 234, 318
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	417, 504
TaiI	ACGT	1 cut(s)	386
TasI	AATT	5 cut(s)	67, 86, 196, 234, 318
TfiI	GAWTC	4 cut(s)	49, 104, 157, 182
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	465
TspGWI	ACGGA	1 cut(s)	453
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	499
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.