Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000558

Physical Location & Seq

Genomic Coordinates Forward (+)

19731969 .. 19734722

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1122800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGAAACCTCTGGTGGCGCTCGATAAAGGCACCACTTGCTCTTCTTGGAACTACTCCGGCCAGAGATTAGCCACTGGCTCCGTCGACGGAACTCTCACCGTCTTCGACTCGCGCGACCCTTGCTCTTCCTCCTTGTCCTGCACCTCAAAATCCAAGGTACACGAGGCTGCTGGCATTGTGAAAATTGGTTGGGTTCCGCCGGAATACGGTGACGCAGTGGCGTGTGTTTGCACAGATGGGACTTTGTTATTGTGGGAGGAAGTAGCTGAAGATGCACAACCTCTTCAATGGAAGCTGTGCATAAGCTTTAACGGCGGTTCGGCTCAACTGCTAGATACCCAGTTTGGAGTCTCAGCGGCAGGTTTAAAAATGGTCACTGCATATTCAGATGGCCGTGTCAAGGTTTATGAGCTACTGGATCCCTTGGAACTGAAGAATTGGCAACTTCAGGCGGAATTTCAGAATGTTATTGATTCGGTGTCTACAGTTGGCCCTGCCATGTGCTTATCTGCATCTATATCTTGGAATCCACGAAGAGGAGAAAGCCAGGAATCAAGTTTTGTTTTGGGTTTCAGTTCAAACACACCACAACTTAATTCCGCCAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTCCCGGTTGCAGAGTTGGCCTCGCCTGGTGACAACGATAATCAGGTTTATGCAGTTGTGTGGGCACCGAACATTGGAAGGCCGTATGAGGTAATTGCTATTGCCACTCACAAGGGAATATCAATATGGCATCTTGGTCTAAACCCTGACTCAAATGGAAGACTCTCATTGAAGAAGATTGCAGTACTTTCGGGTCACAAAGGCGAGGTCTGGCAGATGGAATGGGATATGAGTGGAATGACTTTGGCGACCACCGGGAATGATGGGTCAGTAAGGTTATGGCAGTCTAGTTTGAACGGAGTTTGGCATGAAGAGGCTACTTTTGAACCCACGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000323 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0006996 GO:0006997 GO:0006999 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0022402 GO:0031080 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0071840 GO:0098588 GO:0098805 GO:0098813 GO:0098852 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 ko04150 map03013 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

327

Amino Acids

35.47

Weight (kDa)

4.88

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	15 - 87	1.4e-06	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	196 - 309	2.4e-06	WDR3 first beta-propeller domain
WD40	PF00400	272 - 308	9.2e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64350
fragaria_vesca	FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica	MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica	Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis	pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis	RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata	RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora	Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa	Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha	Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana	Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AccB1I	GGYRCC	2 cut(s)	32, 706
AccB7I	CCANNNNNTGG	1 cut(s)	612
AccI	GTMKAC	2 cut(s)	87, 485
AccII	CGCG	2 cut(s)	115, 117
AciI	CCGC	5 cut(s)	200, 318, 359, 455, 603
AclWI	GGATC	2 cut(s)	416, 429
AcoI	YGGCCR	2 cut(s)	61, 394
AcsI	RAATTY	2 cut(s)	458, 617
AcuI	CTGAAG	3 cut(s)	291, 434, 455
AfaI	GTAC	2 cut(s)	162, 828
AfiI	CCNNNNNNNGG	5 cut(s)	209, 403, 539, 612, 716
AgsI	TTSAA	5 cut(s)	290, 582, 814, 937, 968
AjiI	CACGTC	1 cut(s)	975
AjnI	CCWGG	2 cut(s)	549, 667
AluBI	AGCT	4 cut(s)	269, 298, 309, 415
AluI	AGCT	4 cut(s)	269, 298, 309, 415
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	416, 429
AoxI	GGCC	5 cut(s)	61, 394, 493, 660, 722
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	2 cut(s)	458, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	834, 866
AspLEI	GCGC	2 cut(s)	22, 117
AspS9I	GGNCC	1 cut(s)	494
AsuC2I	CCSGG	2 cut(s)	647, 898
AsuHPI	GGTGA	3 cut(s)	91, 224, 683
BaeGI	GKGCMC	1 cut(s)	709
BamHI	GGATCC	1 cut(s)	421
BanI	GGYRCC	2 cut(s)	32, 706
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	2 cut(s)	97, 808
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	5 cut(s)	233, 386, 633, 853, 899
BceAI	ACGGC	3 cut(s)	331, 381, 709
BcgI	CGANNNNNNTGC	2 cut(s)	813, 847
BciT130I	CCWGG	2 cut(s)	551, 669
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	2 cut(s)	647, 898
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	2 cut(s)	335, 930
BfmI	CTRYAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	23
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	2 cut(s)	171, 360
BlsI	GCNGC	2 cut(s)	172, 361
BmcAI	AGTACT	1 cut(s)	828
Bme1390I	CCNGG	4 cut(s)	551, 647, 669, 898
BmgBI	CACGTC	1 cut(s)	975
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	6 cut(s)	34, 82, 198, 423, 644, 708
BmrFI	CCNGG	4 cut(s)	551, 647, 669, 898
BmrI	ACTGGG	1 cut(s)	337
BmsI	GCATC	3 cut(s)	265, 524, 781
BmuI	ACTGGG	1 cut(s)	337
BpiI	GAAGAC	2 cut(s)	97, 808
BplI	GAGNNNNNCTC	2 cut(s)	647, 679
BpuMI	CCSGG	2 cut(s)	647, 898
BsaJI	CCNNGG	3 cut(s)	156, 426, 606
Bsc4I	CCNNNNNNNGG	5 cut(s)	209, 403, 539, 612, 716
Bse1I	ACTGG	3 cut(s)	82, 343, 423
BseBI	CCWGG	2 cut(s)	551, 669
BseDI	CCNNGG	3 cut(s)	156, 426, 606
BseLI	CCNNNNNNNGG	5 cut(s)	209, 403, 539, 612, 716
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	3 cut(s)	82, 343, 423
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	127
Bsh1236I	CGCG	2 cut(s)	115, 117
BshFI	GGCC	5 cut(s)	63, 396, 495, 662, 724
BshNI	GGYRCC	2 cut(s)	32, 706
BsiSI	CCGG	4 cut(s)	60, 203, 647, 897
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	5 cut(s)	209, 403, 539, 612, 716
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	5 cut(s)	63, 396, 495, 662, 724
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	2 cut(s)	421, 622
BspACI	CCGC	5 cut(s)	200, 318, 359, 455, 603
BspANI	GGCC	5 cut(s)	63, 396, 495, 662, 724
BspCNI	CTCAG	1 cut(s)	368
BspFNI	CGCG	2 cut(s)	115, 117
BspLI	GGNNCC	6 cut(s)	34, 82, 198, 423, 644, 708
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	416, 429
BspQI	GCTCTTC	2 cut(s)	49, 133
BspT107I	GGYRCC	2 cut(s)	32, 706
BsrI	ACTGG	3 cut(s)	82, 343, 423
BssECI	CCNNGG	3 cut(s)	156, 426, 606
BssMI	GATC	2 cut(s)	421, 622
BssSI	CACGAG	1 cut(s)	164
BssT1I	CCWWGG	3 cut(s)	156, 426, 606
Bst2BI	CACGAG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	551, 669
Bst4CI	ACNGT	3 cut(s)	103, 212, 490
Bst6I	CTCTTC	5 cut(s)	49, 133, 291, 532, 948
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	355
BstFNI	CGCG	2 cut(s)	115, 117
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	22, 117
BstKTI	GATC	2 cut(s)	424, 625
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	421, 622
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 123, 275, 315, 659
BstNI	CCWGG	2 cut(s)	551, 669
BstSCI	CCNGG	4 cut(s)	549, 645, 667, 896
BstSFI	CTRYAG	1 cut(s)	486
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	2 cut(s)	115, 117
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	97, 808
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	5 cut(s)	63, 396, 495, 662, 724
BtrI	CACGTC	1 cut(s)	975
BtsI	GCAGTG	2 cut(s)	225, 378
BtsIMutI	CAGTG	3 cut(s)	75, 225, 378
BveI	ACCTGC	1 cut(s)	353
Cac8I	GCNNGC	1 cut(s)	175
CfoI	GCGC	2 cut(s)	22, 117
Cfr13I	GGNCC	1 cut(s)	494
CseI	GACGC	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	161, 827
CviAII	CATG	2 cut(s)	502, 950
CviQI	GTAC	2 cut(s)	161, 827
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	2 cut(s)	423, 624
DpnII	GATC	2 cut(s)	421, 622
DraI	TTTAAA	1 cut(s)	369
EaeI	YGGCCR	2 cut(s)	61, 394
Eam1104I	CTCTTC	5 cut(s)	49, 133, 291, 532, 948
EarI	CTCTTC	5 cut(s)	49, 133, 291, 532, 948
EciI	GGCGGA	3 cut(s)	189, 470, 592
Eco130I	CCWWGG	3 cut(s)	156, 426, 606
Eco57I	CTGAAG	3 cut(s)	291, 434, 455
EcoRII	CCWGG	2 cut(s)	549, 667
EcoT14I	CCWWGG	3 cut(s)	156, 426, 606
ErhI	CCWWGG	3 cut(s)	156, 426, 606
FaeI	CATG	2 cut(s)	505, 953
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	2 cut(s)	501, 949
FbaI	TGATCA	1 cut(s)	622
FblI	GTMKAC	2 cut(s)	87, 485
Fnu4HI	GCNGC	2 cut(s)	171, 360
Fsp4HI	GCNGC	2 cut(s)	171, 360
FspBI	CTAG	2 cut(s)	335, 930
GlaI	GCGC	2 cut(s)	21, 116
GluI	GCNGC	2 cut(s)	171, 360
HaeII	RGCGCY	1 cut(s)	23
HaeIII	GGCC	5 cut(s)	63, 396, 495, 662, 724
HapII	CCGG	4 cut(s)	60, 203, 647, 897
HgaI	GACGC	1 cut(s)	224
HhaI	GCGC	2 cut(s)	22, 117
Hin1II	CATG	2 cut(s)	505, 953
Hin6I	GCGC	2 cut(s)	20, 115
HinP1I	GCGC	2 cut(s)	20, 115
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	7 cut(s)	110, 351, 476, 529, 554, 791, 804
HpaII	CCGG	4 cut(s)	60, 203, 647, 897
HphI	GGTGA	3 cut(s)	91, 224, 683
Hpy166II	GTNNAC	3 cut(s)	88, 163, 486
Hpy188I	TCNGA	2 cut(s)	391, 465
Hpy8I	GTNNAC	3 cut(s)	88, 163, 486
Hpy99I	CGWCG	3 cut(s)	89, 92, 979
HpyAV	CCTTC	1 cut(s)	714
HpyCH4III	ACNGT	3 cut(s)	103, 212, 490
HpyCH4IV	ACGT	1 cut(s)	974
HpyCH4V	TGCA	9 cut(s)	144, 234, 278, 303, 383, 515, 653, 695, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 123, 275, 315, 659
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	974
Hsp92II	CATG	2 cut(s)	505, 953
HspAI	GCGC	2 cut(s)	20, 115
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	2 cut(s)	421, 622
LguI	GCTCTTC	2 cut(s)	49, 133
LmnI	GCTCC	2 cut(s)	86, 648
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	3 cut(s)	265, 524, 781
MaeI	CTAG	2 cut(s)	335, 930
MaeII	ACGT	1 cut(s)	974
MaeIII	GTNAC	4 cut(s)	212, 376, 671, 836
MalI	GATC	2 cut(s)	423, 624
MboI	GATC	2 cut(s)	421, 622
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	709
MluCI	AATT	6 cut(s)	186, 439, 458, 598, 617, 735
MlyI	GAGTC	4 cut(s)	104, 360, 785, 798
MseI	TTAA	3 cut(s)	312, 368, 597
MspA1I	CMGCKG	1 cut(s)	359
MspI	CCGG	4 cut(s)	60, 203, 647, 897
MspR9I	CCNGG	4 cut(s)	551, 647, 669, 898
MvaI	CCWGG	2 cut(s)	551, 669
MvnI	CGCG	2 cut(s)	115, 117
MwoI	GCNNNNNNNGC	5 cut(s)	39, 123, 275, 315, 659
NciI	CCSGG	2 cut(s)	647, 898
NdeII	GATC	2 cut(s)	421, 622
NlaIII	CATG	2 cut(s)	505, 953
NlaIV	GGNNCC	6 cut(s)	34, 82, 198, 423, 644, 708
NmuCI	GTSAC	4 cut(s)	212, 376, 671, 836
PciSI	GCTCTTC	2 cut(s)	49, 133
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	476, 529, 554
PflMI	CCANNNNNTGG	1 cut(s)	612
PkrI	GCNGC	2 cut(s)	172, 361
PleI	GAGTC	4 cut(s)	104, 359, 785, 798
PpsI	GAGTC	4 cut(s)	104, 359, 785, 798
Psp6I	CCWGG	2 cut(s)	549, 667
PspGI	CCWGG	2 cut(s)	549, 667
PspN4I	GGNNCC	6 cut(s)	34, 82, 198, 423, 644, 708
PspPI	GGNCC	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	2 cut(s)	162, 828
RsaNI	GTAC	2 cut(s)	161, 827
SalI	GTCGAC	1 cut(s)	86
SapI	GCTCTTC	2 cut(s)	49, 133
SaqAI	TTAA	3 cut(s)	312, 368, 597
SatI	GCNGC	2 cut(s)	171, 360
Sau3AI	GATC	2 cut(s)	421, 622
Sau96I	GGNCC	1 cut(s)	494
ScaI	AGTACT	1 cut(s)	828
SchI	GAGTC	4 cut(s)	104, 360, 785, 798
ScrFI	CCNGG	4 cut(s)	551, 647, 669, 898
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	3 cut(s)	265, 524, 781
SfcI	CTRYAG	1 cut(s)	486
SgrDI	CGTCGACG	1 cut(s)	86
Sse9I	AATT	6 cut(s)	186, 439, 458, 598, 617, 735
SsiI	CCGC	5 cut(s)	200, 318, 359, 455, 603
SspMI	CTAG	2 cut(s)	335, 930
StyD4I	CCNGG	4 cut(s)	549, 645, 667, 896
StyI	CCWWGG	3 cut(s)	156, 426, 606
TaaI	ACNGT	3 cut(s)	103, 212, 490
TaiI	ACGT	1 cut(s)	977
TaqI	TCGA	3 cut(s)	24, 87, 108
TasI	AATT	6 cut(s)	186, 439, 458, 598, 617, 735
TatI	WGTACW	1 cut(s)	826
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	3 cut(s)	476, 529, 554
Tru1I	TTAA	3 cut(s)	312, 368, 597
Tru9I	TTAA	3 cut(s)	312, 368, 597
TscAI	CASTG	3 cut(s)	82, 225, 385
TseFI	GTSAC	4 cut(s)	212, 376, 671, 836
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	4 cut(s)	212, 376, 671, 836
TspDTI	ATGAA	1 cut(s)	966
TspGWI	ACGGA	3 cut(s)	73, 105, 954
TspRI	CASTG	3 cut(s)	82, 225, 385
Van91I	CCANNNNNTGG	1 cut(s)	612
XapI	RAATTY	2 cut(s)	458, 617
XmiI	GTMKAC	2 cut(s)	87, 485
XspI	CTAG	2 cut(s)	335, 930
ZrmI	AGTACT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.