Rorug07G0022400

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000558
Physical Location & Seq
Reverse (-)
1633075 .. 1634528
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0022400.1

Sequence Viewer

Length: 888 bp
ATGCCAGAAATTCAATTGGGAACTCACACGTTGAAATCTCATGGACTCAAAGTGGCAAATGTGCACAAGTATGACTGGATGATTCTTCTAGTTCTTGGGGCGATCGATATTACTTTGAATGTCATCGAGCCTTTTCACCGGTTTCTTAATCAAGATATGATGACTGATTTGAAGTACCCCCTTCAGCTAGACACTGTACCAATGTGGTGTGTTCCGATTTACGCTGTATTCTTGCCGGTTGGTATCTTTTTTGCGTTCTACTTCGTCAGAAAGGATATTTATGACTTGCACCATGCTATGTTGGGTCTTGCATATTCAATTTTGATAACTCTGGTTATCACCGACTCAATTAAAGATGCTGTTGGTCGCCCCCGTCCCGACTTCTTCTATCGGTGTTTTCCTGATGGACAAGAGGCATATGATGCGTACTATGGTGATGTTTTATGTACTGGAGATAAGGATGCTATAAGGGAAGGATATAAAAGCTTTCCTAGTGGCCATTCTTCAGTGTCATTTGCAGGCCTCGGTTTTCTTGCGTGGTACTTGGCTGGAAAGATCAAAGCATTTGATCGTCGAGGCCATGCTGCAAAGCTGTGCATTGTGATTTTTCCACTACTTTGTGCTGCTCTGGTAGCAGTCTCGCGGGTGGATGACTACTGGCATCATTGGGCAGACGTCTTCACTGGTAGTCTTATAGGAATTGTCATAGCATCAGTTTGTTACTTGCAGTCCTTCCCTTTTCCAAACCAGGAAAATGGGTGGGCACCTCATGTATATTTTCGAGTGATGGCTGCACAGCTGAGTGATGCCTCGGCGACAAGGCTTAACAATCTCAATATGCGAAGACCAGACGTTGAAGCTCCAGTTGATTTCAGTCCACCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

295

Amino Acids

33.27

Weight (kDa)

6.24

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 101 - 244 5.7e-30 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 678
AccB1I GGYRCC 1 cut(s) 763
AccII CGCG 1 cut(s) 643
AciI CCGC 1 cut(s) 643
AcoI YGGCCR 1 cut(s) 496
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 167, 489
AcyI GRCGYC 1 cut(s) 675
AfaI GTAC 5 cut(s) 176, 198, 428, 448, 542
AflIII ACRYGT 1 cut(s) 27
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 6 cut(s) 14, 34, 118, 172, 318, 857
AjnI CCWGG 1 cut(s) 747
AluBI AGCT 6 cut(s) 187, 486, 592, 799, 860, 884
AluI AGCT 6 cut(s) 187, 486, 592, 799, 860, 884
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 1 cut(s) 643
Alw44I GTGCAC 1 cut(s) 62
AoxI GGCC 3 cut(s) 496, 520, 577
ApaLI GTGCAC 1 cut(s) 62
ApeKI GCWGC 3 cut(s) 584, 623, 791
ApoI RAATTY 1 cut(s) 9
AsiGI ACCGGT 1 cut(s) 138
AsuHPI GGTGA 3 cut(s) 128, 331, 446
BaeGI GKGCMC 2 cut(s) 66, 766
BalI TGGCCA 1 cut(s) 498
BanI GGYRCC 1 cut(s) 763
BbsI GAAGAC 2 cut(s) 670, 850
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 3 cut(s) 571, 610, 778
BccI CCATC 2 cut(s) 398, 781
BciT130I CCWGG 1 cut(s) 749
BcoDI GTCTC 1 cut(s) 643
BfaI CTAG 3 cut(s) 89, 188, 492
BisI GCNGC 3 cut(s) 585, 624, 792
BlsI GCNGC 3 cut(s) 586, 625, 793
Bme1390I CCNGG 1 cut(s) 749
BmiI GGNNCC 1 cut(s) 765
BmrFI CCNGG 1 cut(s) 749
BmsI GCATC 6 cut(s) 346, 412, 451, 670, 719, 796
BpiI GAAGAC 2 cut(s) 670, 850
BpmI CTGGAG 2 cut(s) 471, 846
Bsa29I ATCGAT 1 cut(s) 105
BsaHI GRCGYC 1 cut(s) 675
BsaJI CCNNGG 2 cut(s) 523, 810
BsaWI WCCGGW 1 cut(s) 138
Bse118I RCCGGY 2 cut(s) 138, 235
Bse1I ACTGG 5 cut(s) 80, 454, 662, 688, 863
BseBI CCWGG 1 cut(s) 749
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 523, 810
BseGI GGATG 3 cut(s) 84, 466, 655
BseMII CTCAG 1 cut(s) 791
BseNI ACTGG 5 cut(s) 80, 454, 662, 688, 863
BseSI GKGCMC 2 cut(s) 66, 766
BseXI GCAGC 3 cut(s) 571, 610, 778
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 1 cut(s) 643
Bsh1285I CGRYCG 1 cut(s) 105
BshFI GGCC 3 cut(s) 498, 522, 579
BshNI GGYRCC 1 cut(s) 763
BshTI ACCGGT 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 2 cut(s) 139, 236
BslFI GGGAC 1 cut(s) 360
BsmAI GTCTC 1 cut(s) 643
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 3 cut(s) 498, 522, 579
Bsp1286I GDGCHC 2 cut(s) 66, 766
Bsp143I GATC 3 cut(s) 102, 555, 568
BspACI CCGC 1 cut(s) 643
BspANI GGCC 3 cut(s) 498, 522, 579
BspCNI CTCAG 1 cut(s) 792
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 765
BspT107I GGYRCC 1 cut(s) 763
BsrFI RCCGGY 2 cut(s) 138, 235
BsrI ACTGG 5 cut(s) 80, 454, 662, 688, 863
BssAI RCCGGY 2 cut(s) 138, 235
BssECI CCNNGG 2 cut(s) 523, 810
BssMI GATC 3 cut(s) 102, 555, 568
BssNI GRCGYC 1 cut(s) 675
Bst2UI CCWGG 1 cut(s) 749
Bst4CI ACNGT 1 cut(s) 196
BstACI GRCGYC 1 cut(s) 675
BstAPI GCANNNNNTGC 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 1 cut(s) 800
BstF5I GGATG 3 cut(s) 84, 466, 655
BstFNI CGCG 1 cut(s) 643
BstKTI GATC 3 cut(s) 105, 558, 571
BstMAI GTCTC 1 cut(s) 643
BstMBI GATC 3 cut(s) 102, 555, 568
BstMCI CGRYCG 1 cut(s) 105
BstMWI GCNNNNNNNGC 2 cut(s) 422, 632
BstNI CCWGG 1 cut(s) 749
BstSCI CCNGG 1 cut(s) 747
BstSLI GKGCMC 2 cut(s) 66, 766
BstUI CGCG 1 cut(s) 643
BstV1I GCAGC 3 cut(s) 571, 610, 778
BstV2I GAAGAC 2 cut(s) 670, 850
BstXI CCANNNNNNTGG 1 cut(s) 755
Bsu15I ATCGAT 1 cut(s) 105
BsuRI GGCC 3 cut(s) 498, 522, 579
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 3 cut(s) 84, 466, 655
BtsIMutI CAGTG 3 cut(s) 192, 513, 681
Cac8I GCNNGC 1 cut(s) 520
Cfr10I RCCGGY 2 cut(s) 138, 235
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 5 cut(s) 175, 197, 427, 447, 541
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 4 cut(s) 41, 293, 581, 770
CviQI GTAC 5 cut(s) 175, 197, 427, 447, 541
DdeI CTNAG 1 cut(s) 800
DpnI GATC 3 cut(s) 104, 557, 570
DpnII GATC 3 cut(s) 102, 555, 568
EaeI YGGCCR 1 cut(s) 496
Eco147I AGGCCT 1 cut(s) 522
Eco57I CTGAAG 2 cut(s) 167, 489
EcoRII CCWGG 1 cut(s) 747
FaeI CATG 4 cut(s) 44, 296, 584, 773
FaqI GGGAC 1 cut(s) 360
FatI CATG 4 cut(s) 40, 292, 580, 769
FauI CCCGC 1 cut(s) 636
FauNDI CATATG 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 585, 624, 792
FokI GGATG 3 cut(s) 91, 473, 662
Fsp4HI GCNGC 3 cut(s) 585, 624, 792
FspBI CTAG 3 cut(s) 89, 188, 492
GluI GCNGC 3 cut(s) 585, 624, 792
GsuI CTGGAG 2 cut(s) 471, 846
HaeIII GGCC 3 cut(s) 498, 522, 579
HapII CCGG 2 cut(s) 139, 236
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 4 cut(s) 44, 296, 584, 773
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 3 cut(s) 45, 82, 344
HpaII CCGG 2 cut(s) 139, 236
HphI GGTGA 3 cut(s) 128, 331, 446
Hpy166II GTNNAC 2 cut(s) 64, 878
Hpy188I TCNGA 2 cut(s) 216, 269
Hpy188III TCNNGA 3 cut(s) 152, 377, 401
Hpy8I GTNNAC 2 cut(s) 64, 878
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 3 cut(s) 191, 467, 742
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 3 cut(s) 29, 675, 852
HpyCH4V TGCA 8 cut(s) 64, 289, 311, 518, 587, 597, 727, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 422, 632
HpyF3I CTNAG 1 cut(s) 800
HpySE526I ACGT 3 cut(s) 29, 675, 852
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 4 cut(s) 44, 296, 584, 773
Kzo9I GATC 3 cut(s) 102, 555, 568
LmnI GCTCC 1 cut(s) 865
Lsp1109I GCAGC 3 cut(s) 571, 610, 778
LweI GCATC 6 cut(s) 346, 412, 451, 670, 719, 796
MaeI CTAG 3 cut(s) 89, 188, 492
MaeII ACGT 3 cut(s) 29, 675, 852
MaeIII GTNAC 1 cut(s) 719
MalI GATC 3 cut(s) 104, 557, 570
MboI GATC 3 cut(s) 102, 555, 568
MboII GAAGA 5 cut(s) 77, 376, 495, 670, 855
MfeI CAATTG 1 cut(s) 14
MhlI GDGCHC 2 cut(s) 66, 766
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 5 cut(s) 9, 14, 318, 348, 699
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 2 cut(s) 39, 338
MnlI CCTC 5 cut(s) 406, 533, 569, 777, 820
Mox20I TGGCCA 1 cut(s) 498
MscI TGGCCA 1 cut(s) 498
MseI TTAA 3 cut(s) 147, 351, 825
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 799
MspI CCGG 2 cut(s) 139, 236
MspR9I CCNGG 1 cut(s) 749
MunI CAATTG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 749
MvnI CGCG 1 cut(s) 643
MwoI GCNNNNNNNGC 2 cut(s) 422, 632
NdeI CATATG 1 cut(s) 418
NdeII GATC 3 cut(s) 102, 555, 568
NlaIII CATG 4 cut(s) 44, 296, 584, 773
NlaIV GGNNCC 1 cut(s) 765
NmeAIII GCCGAG 1 cut(s) 791
PceI AGGCCT 1 cut(s) 522
PfeI GAWTC 1 cut(s) 82
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 3 cut(s) 586, 625, 793
Ple19I CGATCG 1 cut(s) 105
PleI GAGTC 2 cut(s) 39, 338
PpsI GAGTC 2 cut(s) 39, 338
Psp6I CCWGG 1 cut(s) 747
PspGI CCWGG 1 cut(s) 747
PspN4I GGNNCC 1 cut(s) 765
PvuI CGATCG 1 cut(s) 105
PvuII CAGCTG 1 cut(s) 799
RsaI GTAC 5 cut(s) 176, 198, 428, 448, 542
RsaNI GTAC 5 cut(s) 175, 197, 427, 447, 541
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 147, 351, 825
SatI GCNGC 3 cut(s) 585, 624, 792
Sau3AI GATC 3 cut(s) 102, 555, 568
SchI GAGTC 2 cut(s) 39, 338
ScrFI CCNGG 1 cut(s) 749
SduI GDGCHC 2 cut(s) 66, 766
SfaNI GCATC 6 cut(s) 346, 412, 451, 670, 719, 796
SmiMI CAYNNNNRTG 1 cut(s) 69
Sse9I AATT 5 cut(s) 9, 14, 318, 348, 699
SseBI AGGCCT 1 cut(s) 522
SsiI CCGC 1 cut(s) 643
SspMI CTAG 3 cut(s) 89, 188, 492
StuI AGGCCT 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 747
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 3 cut(s) 32, 678, 855
TaqI TCGA 4 cut(s) 105, 126, 574, 781
TasI AATT 5 cut(s) 9, 14, 318, 348, 699
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 147, 351, 825
Tru9I TTAA 3 cut(s) 147, 351, 825
TscAI CASTG 3 cut(s) 199, 513, 688
TseI GCWGC 3 cut(s) 584, 623, 791
TspRI CASTG 3 cut(s) 199, 513, 688
VneI GTGCAC 1 cut(s) 62
XapI RAATTY 1 cut(s) 9
XspI CTAG 3 cut(s) 89, 188, 492
ZraI GACGTC 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.