RchiOBHm_Chr7g0222791

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000558
Physical Location & Seq
Reverse (-)
44425259 .. 44426332
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19944

Sequence Viewer

Length: 678 bp
ATGGAACCAGCCGGTCAATTCGCCATTGTCCCAACTCCAGGTTTAGGCCACCTGATACCCCTGCTCGAGCTGGCCAAACGACTCGTTGTCCACCATAACTTCACGTCACCTTCCTCATCCCCAAAGACGAGCATATCCTCCACCTTCCTCCCTCCAGTCAACTTCGACGACCTTCCACCAGAATCGAAGGTGGAAACCAAGATCGCTCTCACCTTGGCTCGGTCACTCTTCGCTGTCCGCGACTCAGTTAAGGCCCTAAGGGAATCGACTCGGCTGGTGTCGCTTGTTGTTGATCTCTTTGGTCCTGAGGCCTTTGACGTGGCCATTGAGTTTAATGTGCTGCCCTACCTTTTCTTCCCTACTTCGGCAATGGATTTGTGGTTTGTGTTTGAGTTGCCAAAGCTTGACGAGACTACTACTTGTGAGTACAGGGATTTGCCTGAACCGGTCCAGTATCCGGGTTGTGTGCCGTTGCAGGGCAGAGACTTAGCAGACCTGGTTCAAGATAGGAGCAATGATGCTTATAAGGCGGCTGCTGGGATCATGGTGAATAGCTTTGCGGATTTGGAACCGGGTGCTTTCAAGGCTTTCAAGGAGCAAGGACCAGGTCTTGGTCTTCCACCGGTTTACCCGGTAGGACCGGTTCGGCGGATGAGTTGGGTGAGAATGAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

225

Amino Acids

24.72

Weight (kDa)

5.11

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 525
AccB7I CCANNNNNTGG 1 cut(s) 611
AccII CGCG 1 cut(s) 240
AciI CCGC 4 cut(s) 238, 530, 560, 649
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 2 cut(s) 72, 321
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 7 cut(s) 38, 44, 219, 364, 457, 476, 611
AgeI ACCGGT 3 cut(s) 445, 622, 640
AgsI TTSAA 3 cut(s) 503, 583, 592
AhdI GACNNNNNGTC 1 cut(s) 86
AjiI CACGTC 2 cut(s) 105, 319
AjnI CCWGG 3 cut(s) 37, 495, 604
AluBI AGCT 3 cut(s) 70, 403, 555
AluI AGCT 3 cut(s) 70, 403, 555
Alw26I GTCTC 2 cut(s) 404, 477
AlwI GGATC 1 cut(s) 548
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 5 cut(s) 46, 72, 252, 309, 321
ApeKI GCWGC 2 cut(s) 340, 533
AsiGI ACCGGT 3 cut(s) 445, 622, 640
AspS9I GGNCC 5 cut(s) 253, 302, 448, 602, 638
AsuC2I CCSGG 3 cut(s) 459, 573, 632
AsuHPI GGTGA 4 cut(s) 99, 202, 559, 673
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 4 cut(s) 302, 448, 602, 638
AxyI CCTNAGG 2 cut(s) 257, 306
BalI TGGCCA 2 cut(s) 74, 323
BbsI GAAGAC 1 cut(s) 608
BbvI GCAGC 2 cut(s) 327, 520
BceAI ACGGC 1 cut(s) 454
BciT130I CCWGG 3 cut(s) 39, 497, 606
BciVI GTATCC 1 cut(s) 465
BcnI CCSGG 3 cut(s) 459, 573, 632
BcoDI GTCTC 2 cut(s) 404, 477
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 3 cut(s) 341, 531, 534
BlsI GCNGC 3 cut(s) 342, 532, 535
Bme1390I CCNGG 6 cut(s) 39, 459, 497, 573, 606, 632
Bme18I GGWCC 4 cut(s) 302, 448, 602, 638
BmeRI GACNNNNNGTC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 65
BmgBI CACGTC 2 cut(s) 105, 319
BmgT120I GGNCC 5 cut(s) 253, 302, 448, 602, 638
BmiI GGNNCC 2 cut(s) 6, 570
BmrFI CCNGG 6 cut(s) 39, 459, 497, 573, 606, 632
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 1 cut(s) 608
BpmI CTGGAG 2 cut(s) 21, 138
BpuMI CCSGG 3 cut(s) 459, 573, 632
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 3 cut(s) 445, 622, 640
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 44, 219, 364, 457, 476, 611
Bse118I RCCGGY 4 cut(s) 11, 445, 622, 640
Bse1I ACTGG 2 cut(s) 155, 451
Bse21I CCTNAGG 2 cut(s) 257, 306
Bse3DI GCAATG 2 cut(s) 375, 520
BseBI CCWGG 3 cut(s) 39, 497, 606
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 116, 657
BseLI CCNNNNNNNGG 7 cut(s) 38, 44, 219, 364, 457, 476, 611
BseMI GCAATG 2 cut(s) 375, 520
BseMII CTCAG 2 cut(s) 258, 297
BseNI ACTGG 2 cut(s) 155, 451
BseXI GCAGC 2 cut(s) 327, 520
BseYI CCCAGC 1 cut(s) 536
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 5 cut(s) 48, 74, 254, 311, 323
BshTI ACCGGT 3 cut(s) 445, 622, 640
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 7 cut(s) 12, 446, 458, 572, 623, 632, 641
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 7 cut(s) 38, 44, 219, 364, 457, 476, 611
BsmAI GTCTC 2 cut(s) 404, 477
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 5 cut(s) 48, 74, 254, 311, 323
BsoBI CYCGRG 1 cut(s) 65
Bsp143I GATC 3 cut(s) 201, 292, 540
BspACI CCGC 4 cut(s) 238, 530, 560, 649
BspANI GGCC 5 cut(s) 48, 74, 254, 311, 323
BspCNI CTCAG 2 cut(s) 257, 298
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 6, 570
BspPI GGATC 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 375, 520
BsrFI RCCGGY 4 cut(s) 11, 445, 622, 640
BsrI ACTGG 2 cut(s) 155, 451
BssAI RCCGGY 4 cut(s) 11, 445, 622, 640
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 3 cut(s) 201, 292, 540
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 3 cut(s) 39, 497, 606
Bst6I CTCTTC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 4 cut(s) 244, 257, 306, 487
BstF5I GGATG 2 cut(s) 116, 657
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 3 cut(s) 204, 295, 543
BstMAI GTCTC 2 cut(s) 404, 477
BstMBI GATC 3 cut(s) 201, 292, 540
BstMWI GCNNNNNNNGC 3 cut(s) 280, 527, 584
BstNI CCWGG 3 cut(s) 39, 497, 606
BstSCI CCNGG 6 cut(s) 37, 457, 495, 571, 604, 630
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 327, 520
BstV2I GAAGAC 1 cut(s) 608
Bsu36I CCTNAGG 2 cut(s) 257, 306
BsuI GTATCC 1 cut(s) 465
BsuRI GGCC 5 cut(s) 48, 74, 254, 311, 323
BtrI CACGTC 2 cut(s) 105, 319
BtsCI GGATG 2 cut(s) 116, 657
Cac8I GCNNGC 1 cut(s) 72
Cfr10I RCCGGY 4 cut(s) 11, 445, 622, 640
Cfr13I GGNCC 5 cut(s) 253, 302, 448, 602, 638
CsiI ACCWGGT 2 cut(s) 495, 604
Csp6I GTAC 1 cut(s) 427
CspAI ACCGGT 3 cut(s) 445, 622, 640
CviAII CATG 1 cut(s) 544
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 4 cut(s) 244, 257, 306, 487
DpnI GATC 3 cut(s) 203, 294, 542
DpnII GATC 3 cut(s) 201, 292, 540
DriI GACNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 2 cut(s) 72, 321
Eam1104I CTCTTC 1 cut(s) 233
Eam1105I GACNNNNNGTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 233
EciI GGCGGA 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 311
Eco47I GGWCC 4 cut(s) 302, 448, 602, 638
Eco81I CCTNAGG 2 cut(s) 257, 306
Eco88I CYCGRG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 3 cut(s) 37, 495, 604
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 547
FaiI YATR 4 cut(s) 96, 134, 525, 545
FaqI GGGAC 1 cut(s) 14
FatI CATG 1 cut(s) 543
Fnu4HI GCNGC 3 cut(s) 341, 531, 534
FokI GGATG 2 cut(s) 103, 664
Fsp4HI GCNGC 3 cut(s) 341, 531, 534
GluI GCNGC 3 cut(s) 341, 531, 534
GsaI CCCAGC 1 cut(s) 540
GsuI CTGGAG 2 cut(s) 21, 138
HaeIII GGCC 5 cut(s) 48, 74, 254, 311, 323
HapII CCGG 7 cut(s) 12, 446, 458, 572, 623, 632, 641
Hin1II CATG 1 cut(s) 547
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 5 cut(s) 81, 182, 242, 263, 268
HpaII CCGG 7 cut(s) 12, 446, 458, 572, 623, 632, 641
HphI GGTGA 4 cut(s) 99, 202, 559, 673
Hpy166II GTNNAC 3 cut(s) 91, 160, 628
Hpy188III TCNNGA 2 cut(s) 305, 503
Hpy8I GTNNAC 3 cut(s) 91, 160, 628
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 4 cut(s) 120, 154, 181, 182
HpyCH4IV ACGT 2 cut(s) 104, 318
HpyCH4V TGCA 1 cut(s) 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 280, 527, 584
HpyF3I CTNAG 4 cut(s) 244, 257, 306, 487
HpySE526I ACGT 2 cut(s) 104, 318
Hsp92II CATG 1 cut(s) 547
Kzo9I GATC 3 cut(s) 201, 292, 540
LmnI GCTCC 2 cut(s) 510, 595
Lsp1109I GCAGC 2 cut(s) 327, 520
LweI GCATC 1 cut(s) 508
MabI ACCWGGT 2 cut(s) 495, 604
MaeII ACGT 2 cut(s) 104, 318
MaeIII GTNAC 2 cut(s) 105, 222
MalI GATC 3 cut(s) 203, 294, 542
MboI GATC 3 cut(s) 201, 292, 540
MboII GAAGA 3 cut(s) 220, 346, 608
MlsI TGGCCA 2 cut(s) 74, 323
MluCI AATT 1 cut(s) 17
MluNI TGGCCA 2 cut(s) 74, 323
MlyI GAGTC 3 cut(s) 75, 236, 262
MnlI CCTC 5 cut(s) 124, 148, 158, 162, 301
Mox20I TGGCCA 2 cut(s) 74, 323
MscI TGGCCA 2 cut(s) 74, 323
MseI TTAA 2 cut(s) 249, 333
Msp20I TGGCCA 2 cut(s) 74, 323
MspI CCGG 7 cut(s) 12, 446, 458, 572, 623, 632, 641
MspR9I CCNGG 6 cut(s) 39, 459, 497, 573, 606, 632
MvaI CCWGG 3 cut(s) 39, 497, 606
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 280, 527, 584
NciI CCSGG 3 cut(s) 459, 573, 632
NdeII GATC 3 cut(s) 201, 292, 540
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 2 cut(s) 6, 570
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 2 cut(s) 105, 222
PaeR7I CTCGAG 1 cut(s) 65
PceI AGGCCT 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PfeI GAWTC 2 cut(s) 182, 263
PflFI GACNNNGTC 1 cut(s) 606
PflMI CCANNNNNTGG 1 cut(s) 611
PinAI ACCGGT 3 cut(s) 445, 622, 640
PkrI GCNGC 3 cut(s) 342, 532, 535
PleI GAGTC 3 cut(s) 75, 236, 262
PpsI GAGTC 3 cut(s) 75, 236, 262
PsiI TTATAA 1 cut(s) 525
Psp6I CCWGG 3 cut(s) 37, 495, 604
PspFI CCCAGC 1 cut(s) 536
PspGI CCWGG 3 cut(s) 37, 495, 604
PspN4I GGNNCC 2 cut(s) 6, 570
PspPI GGNCC 5 cut(s) 253, 302, 448, 602, 638
PspXI VCTCGAGB 1 cut(s) 65
PsrI GAACNNNNNNTAC 2 cut(s) 627, 659
PsyI GACNNNGTC 1 cut(s) 606
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SaqAI TTAA 2 cut(s) 249, 333
SatI GCNGC 3 cut(s) 341, 531, 534
Sau3AI GATC 3 cut(s) 201, 292, 540
Sau96I GGNCC 5 cut(s) 253, 302, 448, 602, 638
SchI GAGTC 3 cut(s) 75, 236, 262
ScrFI CCNGG 6 cut(s) 39, 459, 497, 573, 606, 632
SexAI ACCWGGT 2 cut(s) 495, 604
SfaNI GCATC 1 cut(s) 508
Sfr274I CTCGAG 1 cut(s) 65
SinI GGWCC 4 cut(s) 302, 448, 602, 638
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 65
SmoI CTYRAG 1 cut(s) 65
Sse9I AATT 1 cut(s) 17
SseBI AGGCCT 1 cut(s) 311
SsiI CCGC 4 cut(s) 238, 530, 560, 649
StuI AGGCCT 1 cut(s) 311
StyD4I CCNGG 6 cut(s) 37, 457, 495, 571, 604, 630
StyI CCWWGG 1 cut(s) 213
TaiI ACGT 2 cut(s) 107, 321
TaqI TCGA 4 cut(s) 66, 165, 185, 266
TaqII GACCGA 1 cut(s) 210
TasI AATT 1 cut(s) 17
TatI WGTACW 1 cut(s) 426
TauI GCSGC 1 cut(s) 533
TfiI GAWTC 2 cut(s) 182, 263
Tru1I TTAA 2 cut(s) 249, 333
Tru9I TTAA 2 cut(s) 249, 333
TseFI GTSAC 2 cut(s) 105, 222
TseI GCWGC 2 cut(s) 340, 533
Tsp45I GTSAC 2 cut(s) 105, 222
Tth111I GACNNNGTC 1 cut(s) 606
Van91I CCANNNNNTGG 1 cut(s) 611
VpaK11BI GGWCC 4 cut(s) 302, 448, 602, 638
XhoI CTCGAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.