Rh7DG150500

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000558
Physical Location & Seq
Reverse (-)
12940473 .. 12943832
3360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG150500.1

Sequence Viewer

Length: 981 bp
ATGGAGAAATCTCTGGTGACGCTCGATAAAGGCACCACCTGCTCCTCTTGGAACTACTCCGGCCAGAGATTAGCCACCGGCTCCCTCGACGGAACTCTCACCATCTTCGACTCGCGCCACCCGTCTTCTTCCTCTTTCTCCTCCACCTCAAAATCCAAGGTGCACCACGCTTCTGCCATTGTCAAAGTTGTCTGGGTTCCTCCGGAGTTCGGTCACGCAGTGGCGTGTGTTTGCGGAGATGGAACGCTGTCGTTGTGGGAAGAGACTGTTGAAGATGCACAACCTCTTCAATGGAAGCTGTGCAAAAGCTTTAGAAGTGATTCAGCTCAGCTGCTAGATGTTCAATTTGGGGGTTCATCGTCAAGTTTGAAAATGGTTGCTGCATATTCAGATGGCAATGTCAAGCTCTATGAGCTACTTGATCCCTTGGACTTGAAGAACTGGCAGCTTCAGGCGGAAATTCAGAATGTTATTGATTCAGTATCTACACTTGGGAAAGCTGCGTGCTTATCCGCATCTATATCATGGAATCCAACAGGAGGAGAAAGCCAGGAATCAAGTTTTGTTTTGGGTTTCAATTCAGACACTCTACAACTTAATTCATCTAAGATATGGGAATTTGATCAAGCTCATCAAAGATGGCTCCCAGTTGCGGAATTGGCTTCTCCTAATGACAAGGGTGATCAGGTCTATGCGGTTGCCTGGGCACCAAACATTGGCAGGCCCTATGAGGTAATTGCTGTTGCCACTCAGAAGGGAATATCAATATGGCATCTTGGATTAAACCCTGACTCAGATGGAAGGCTCTCTTCAGAGAAGGTTGCACAACTTTCTGGTCACAAAGGCGAGGTCTGGCAACTGGAGTGGGACATGAGTGGAATGACATTGGCATCCACTGGGAACGATGGGGTAGTACGGTTGTGGCAGTCTAATTTGAATGGCACTTGGCATGAAGAAGCTACATTGGAACCCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

326

Amino Acids

35.47

Weight (kDa)

4.93

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 15 - 87 6.9e-08 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 202 - 309 2.9e-07 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 226 - 311 3.5e-07 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 229 - 309 8.5e-07 THOC3 beta-propeller domain
WD40 PF00400 272 - 308 3.7e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 47
AccB1I GGYRCC 2 cut(s) 32, 706
AccB7I CCANNNNNTGG 1 cut(s) 716
AccII CGCG 1 cut(s) 115
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 5 cut(s) 234, 455, 513, 653, 695
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 2 cut(s) 459, 617
AcuI CTGAAG 2 cut(s) 434, 795
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 1 cut(s) 915
AfiI CCNNNNNNNGG 4 cut(s) 209, 539, 652, 716
AgsI TTSAA 7 cut(s) 272, 290, 344, 370, 436, 577, 937
AjnI CCWGG 2 cut(s) 549, 701
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 257
Alw44I GTGCAC 1 cut(s) 161
AlwI GGATC 1 cut(s) 416
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 2 cut(s) 61, 722
ApaLI GTGCAC 1 cut(s) 161
ApeKI GCWGC 4 cut(s) 331, 380, 445, 500
ApoI RAATTY 2 cut(s) 459, 617
ArsI GACNNNNNNTTYG 2 cut(s) 834, 866
Asp700I GAANNNNTTC 1 cut(s) 319
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 1 cut(s) 723
AsuHPI GGTGA 3 cut(s) 28, 91, 692
BaeGI GKGCMC 2 cut(s) 165, 709
BanI GGYRCC 2 cut(s) 32, 706
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 318, 367, 457, 487
BccI CCATC 6 cut(s) 110, 233, 386, 633, 791, 899
BciT130I CCWGG 2 cut(s) 551, 703
BclI TGATCA 2 cut(s) 622, 682
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 47
BisI GCNGC 4 cut(s) 332, 381, 446, 501
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 4 cut(s) 333, 382, 447, 502
Bme1390I CCNGG 2 cut(s) 551, 703
BmgT120I GGNCC 1 cut(s) 723
BmiI GGNNCC 6 cut(s) 34, 82, 198, 644, 708, 969
BmrFI CCNGG 2 cut(s) 551, 703
BmrI ACTGGG 2 cut(s) 641, 906
BmsI GCATC 4 cut(s) 265, 524, 781, 899
BmuI ACTGGG 2 cut(s) 641, 906
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 881
Bpu1102I GCTNAGC 1 cut(s) 327
BsaJI CCNNGG 3 cut(s) 156, 426, 702
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 4 cut(s) 209, 539, 652, 716
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 4 cut(s) 446, 647, 864, 901
Bse3DI GCAATG 1 cut(s) 403
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 2 cut(s) 551, 703
BseDI CCNNGG 3 cut(s) 156, 426, 702
BseGI GGATG 1 cut(s) 890
BseLI CCNNNNNNNGG 4 cut(s) 209, 539, 652, 716
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 3 cut(s) 341, 764, 807
BseNI ACTGG 4 cut(s) 446, 647, 864, 901
BseRI GAGGAG 3 cut(s) 34, 130, 555
BseSI GKGCMC 2 cut(s) 165, 709
BseXI GCAGC 4 cut(s) 318, 367, 457, 487
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 63, 724
BshNI GGYRCC 2 cut(s) 32, 706
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 60, 78, 203
BslFI GGGAC 1 cut(s) 881
BslI CCNNNNNNNGG 4 cut(s) 209, 539, 652, 716
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 1 cut(s) 881
BsnI GGCC 2 cut(s) 63, 724
Bsp1286I GDGCHC 2 cut(s) 165, 709
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 3 cut(s) 421, 622, 682
Bsp1720I GCTNAGC 1 cut(s) 327
BspACI CCGC 5 cut(s) 234, 455, 513, 653, 695
BspANI GGCC 2 cut(s) 63, 724
BspCNI CTCAG 3 cut(s) 340, 763, 806
BspEI TCCGGA 1 cut(s) 202
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 6 cut(s) 34, 82, 198, 644, 708, 969
BspMI ACCTGC 1 cut(s) 47
BspPI GGATC 1 cut(s) 416
BspT107I GGYRCC 2 cut(s) 32, 706
BsrDI GCAATG 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 4 cut(s) 446, 647, 864, 901
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 156, 426, 702
BssMI GATC 3 cut(s) 421, 622, 682
BssT1I CCWWGG 2 cut(s) 156, 426
Bst2UI CCWGG 2 cut(s) 551, 703
Bst4CI ACNGT 2 cut(s) 268, 918
Bst6I CTCTTC 3 cut(s) 255, 291, 814
BstAPI GCANNNNNTGC 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 505, 722
BstDEI CTNAG 5 cut(s) 327, 606, 750, 793, 978
BstF5I GGATG 1 cut(s) 890
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 3 cut(s) 424, 625, 685
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 3 cut(s) 421, 622, 682
BstMWI GCNNNNNNNGC 3 cut(s) 39, 412, 659
BstNI CCWGG 2 cut(s) 551, 703
BstSCI CCNGG 2 cut(s) 549, 701
BstSLI GKGCMC 2 cut(s) 165, 709
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 4 cut(s) 318, 367, 457, 487
BstV2I GAAGAC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 63, 724
BtsCI GGATG 1 cut(s) 890
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 225, 894
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 2 cut(s) 505, 722
CfoI GCGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 723
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 914
CspCI CAANNNNNGTGG 2 cut(s) 845, 880
CviAII CATG 3 cut(s) 525, 871, 950
CviQI GTAC 1 cut(s) 914
DdeI CTNAG 5 cut(s) 327, 606, 750, 793, 978
DpnI GATC 3 cut(s) 423, 624, 684
DpnII GATC 3 cut(s) 421, 622, 682
DraIII CACNNNGTG 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 3 cut(s) 255, 291, 814
EarI CTCTTC 3 cut(s) 255, 291, 814
EciI GGCGGA 1 cut(s) 470
Eco130I CCWWGG 2 cut(s) 156, 426
Eco57I CTGAAG 2 cut(s) 434, 795
EcoO109I RGGNCCY 1 cut(s) 723
EcoRII CCWGG 2 cut(s) 549, 701
EcoT14I CCWWGG 2 cut(s) 156, 426
ErhI CCWWGG 2 cut(s) 156, 426
FaeI CATG 3 cut(s) 528, 874, 953
FalI AAGNNNNNCTT 2 cut(s) 793, 825
FaqI GGGAC 1 cut(s) 881
FatI CATG 3 cut(s) 524, 870, 949
FbaI TGATCA 2 cut(s) 622, 682
Fnu4HI GCNGC 4 cut(s) 332, 381, 446, 501
FokI GGATG 1 cut(s) 877
Fsp4HI GCNGC 4 cut(s) 332, 381, 446, 501
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 116
GluI GCNGC 4 cut(s) 332, 381, 446, 501
GsuI CTGGAG 1 cut(s) 881
HaeIII GGCC 2 cut(s) 63, 724
HapII CCGG 3 cut(s) 60, 78, 203
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 528, 874, 953
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 6 cut(s) 110, 320, 476, 529, 554, 791
HpaII CCGG 3 cut(s) 60, 78, 203
HphI GGTGA 3 cut(s) 28, 91, 692
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 6 cut(s) 391, 465, 583, 753, 796, 814
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 3 cut(s) 748, 795, 811
HpyCH4III ACNGT 2 cut(s) 268, 918
HpyCH4V TGCA 5 cut(s) 163, 278, 303, 383, 824
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 412, 659
HpyF3I CTNAG 5 cut(s) 327, 606, 750, 793, 978
Hsp92II CATG 3 cut(s) 528, 874, 953
HspAI GCGC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 202
Ksp22I TGATCA 2 cut(s) 622, 682
Kzo9I GATC 3 cut(s) 421, 622, 682
LmnI GCTCC 3 cut(s) 47, 86, 648
Lsp1109I GCAGC 4 cut(s) 318, 367, 457, 487
LweI GCATC 4 cut(s) 265, 524, 781, 899
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 3 cut(s) 16, 212, 836
MalI GATC 3 cut(s) 423, 624, 684
MboI GATC 3 cut(s) 421, 622, 682
MboII GAAGA 9 cut(s) 97, 117, 120, 272, 278, 284, 448, 801, 965
MhlI GDGCHC 2 cut(s) 165, 709
MluCI AATT 8 cut(s) 344, 459, 577, 598, 617, 656, 735, 931
MlyI GAGTC 2 cut(s) 104, 785
MmeI TCCRAC 1 cut(s) 557
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 1 cut(s) 319
MseI TTAA 2 cut(s) 597, 782
MspA1I CMGCKG 1 cut(s) 331
MspI CCGG 3 cut(s) 60, 78, 203
MspR9I CCNGG 2 cut(s) 551, 703
MvaI CCWGG 2 cut(s) 551, 703
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 39, 412, 659
NdeII GATC 3 cut(s) 421, 622, 682
NlaIII CATG 3 cut(s) 528, 874, 953
NlaIV GGNNCC 6 cut(s) 34, 82, 198, 644, 708, 969
NmuCI GTSAC 3 cut(s) 16, 212, 836
PaqCI CACCTGC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 319
PfeI GAWTC 4 cut(s) 320, 476, 529, 554
PflMI CCANNNNNTGG 1 cut(s) 716
PkrI GCNGC 4 cut(s) 333, 382, 447, 502
PleI GAGTC 2 cut(s) 104, 785
PpsI GAGTC 2 cut(s) 104, 785
Psp6I CCWGG 2 cut(s) 549, 701
PspGI CCWGG 2 cut(s) 549, 701
PspN4I GGNNCC 6 cut(s) 34, 82, 198, 644, 708, 969
PspPI GGNCC 1 cut(s) 723
PvuII CAGCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 915
RsaNI GTAC 1 cut(s) 914
SaqAI TTAA 2 cut(s) 597, 782
SatI GCNGC 4 cut(s) 332, 381, 446, 501
Sau3AI GATC 3 cut(s) 421, 622, 682
Sau96I GGNCC 1 cut(s) 723
SchI GAGTC 2 cut(s) 104, 785
ScrFI CCNGG 2 cut(s) 551, 703
SduI GDGCHC 2 cut(s) 165, 709
SfaNI GCATC 4 cut(s) 265, 524, 781, 899
Sse9I AATT 8 cut(s) 344, 459, 577, 598, 617, 656, 735, 931
SsiI CCGC 5 cut(s) 234, 455, 513, 653, 695
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 549, 701
StyI CCWWGG 2 cut(s) 156, 426
TaaI ACNGT 2 cut(s) 268, 918
TaqI TCGA 3 cut(s) 24, 87, 108
TaqII GACCGA 1 cut(s) 200
TasI AATT 8 cut(s) 344, 459, 577, 598, 617, 656, 735, 931
TfiI GAWTC 4 cut(s) 320, 476, 529, 554
Tru1I TTAA 2 cut(s) 597, 782
Tru9I TTAA 2 cut(s) 597, 782
TscAI CASTG 2 cut(s) 225, 901
TseFI GTSAC 3 cut(s) 16, 212, 836
TseI GCWGC 4 cut(s) 331, 380, 445, 500
Tsp45I GTSAC 3 cut(s) 16, 212, 836
TspDTI ATGAA 3 cut(s) 345, 591, 966
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 2 cut(s) 225, 901
Van91I CCANNNNNTGG 1 cut(s) 716
VneI GTGCAC 1 cut(s) 161
XapI RAATTY 2 cut(s) 459, 617
XmnI GAANNNNTTC 1 cut(s) 319
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.