MD06G1103500.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000558
Physical Location & Seq
Forward (+)
24116699 .. 24117460
762 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1103500.v1.1.491

Sequence Viewer

Length: 762 bp
ATGTGGTTAATCAACATATATATATATATAAGAGGGAGAGGTATTCCACCGGTTTTTCCGGTTGGACCGGTGATAAAAACCGGTTCAATAGATGGGATCGATGGGAATGAGTGTTTGAGGTGGCTTGATAAGCTACCCAATGGGTCAGTTTTATTTGTTTCATTTGGGAGTGGTGGGACTCTCTCACAAGAGCAGCTGAATGAGTTGGCCTTGGGTCTTGAATTGAGTGGGTATAGATTTATTTGGGTTGTCAAGAGTCCAAACGAGACAATGAAGAATGCTTCTTTTTTTAGCGTCCAAGGCGAAGAGAACCCGCTTGGGTTTCTACCAAACGGGTTTCTTGAAAGAACAAAAGATGTGGGTCTAGTTGTGCCGACGTGGGCCCCACAGGTCGAAGTGCTGAATCACAGGTCAACGGGCGCGTTTTTGACCCATTGCGGGTGGAACTCGACATTAGAAAGCATCGTGCATGGTGTGCCTCTGATTGCTTGGCCGCTCTATGTAGAGCAAAAGATGAATAAGGTGCTACTAGTTGATGGTTTAAGAGTTGCATTGGGGGTCAAGGAGAATAAGAAGGGAATAGTGGAGAGCCAAGACGTTGCTACTTATGTTAGGGACCTCTTTGAAGGAGATGAAGGAAAATTGCTAAGGAAGAAGATGGAAGAGTATAAAGAGGCTGCCAAATTGGCTTTGGCAGAAGAATGGTCGTCTACCAAGTCACTTGTTGAGGTTGCTCAAATATGGAAGGGACTCAAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

254

Amino Acids

28.13

Weight (kDa)

6.01

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 50 - 185 4.1e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 496
AccI GTMKAC 1 cut(s) 710
AccII CGCG 1 cut(s) 422
AciI CCGC 3 cut(s) 314, 438, 494
AclWI GGATC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 491
AfiI CCNNNNNNNGG 1 cut(s) 438
AgeI ACCGGT 3 cut(s) 49, 67, 80
AgsI TTSAA 4 cut(s) 87, 221, 344, 626
AhlI ACTAGT 1 cut(s) 529
AjiI CACGTC 1 cut(s) 378
AluBI AGCT 2 cut(s) 133, 196
AluI AGCT 2 cut(s) 133, 196
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 104
AoxI GGCC 3 cut(s) 207, 381, 491
ApaI GGGCCC 1 cut(s) 385
ApeKI GCWGC 2 cut(s) 193, 677
AsiGI ACCGGT 3 cut(s) 49, 67, 80
AspLEI GCGC 1 cut(s) 422
AspS9I GGNCC 4 cut(s) 65, 381, 382, 616
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 2 cut(s) 65, 616
BaeGI GKGCMC 1 cut(s) 385
BanII GRGCYC 1 cut(s) 385
BbvI GCAGC 2 cut(s) 205, 664
BccI CCATC 4 cut(s) 86, 95, 530, 652
BcoDI GTCTC 1 cut(s) 260
BcuI ACTAGT 1 cut(s) 529
BfaI CTAG 2 cut(s) 365, 530
BglI GCCNNNNNGGC 1 cut(s) 686
BisI GCNGC 3 cut(s) 194, 494, 678
BlsI GCNGC 3 cut(s) 195, 495, 679
Bme18I GGWCC 2 cut(s) 65, 616
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 4 cut(s) 65, 381, 382, 616
BmiI GGNNCC 3 cut(s) 383, 384, 617
BmsI GCATC 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 737
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 2 cut(s) 210, 298
BsaWI WCCGGW 4 cut(s) 49, 58, 67, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse118I RCCGGY 3 cut(s) 49, 67, 80
Bse3DI GCAATG 1 cut(s) 433
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 210, 298
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMI GCAATG 1 cut(s) 433
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 2 cut(s) 205, 664
Bsh1236I CGCG 1 cut(s) 422
BshFI GGCC 3 cut(s) 209, 383, 493
BshTI ACCGGT 3 cut(s) 49, 67, 80
BshVI ATCGAT 1 cut(s) 99
BsiSI CCGG 4 cut(s) 50, 59, 68, 81
BslFI GGGAC 2 cut(s) 190, 629
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 1 cut(s) 260
BsmFI GGGAC 2 cut(s) 190, 629
BsmI GAATGC 1 cut(s) 283
BsnI GGCC 3 cut(s) 209, 383, 493
Bsp120I GGGCCC 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 385
Bsp143I GATC 1 cut(s) 96
BspACI CCGC 3 cut(s) 314, 438, 494
BspANI GGCC 3 cut(s) 209, 383, 493
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 422
BspLI GGNNCC 3 cut(s) 383, 384, 617
BspPI GGATC 1 cut(s) 104
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 433
BsrFI RCCGGY 3 cut(s) 49, 67, 80
BssAI RCCGGY 3 cut(s) 49, 67, 80
BssECI CCNNGG 2 cut(s) 210, 298
BssMI GATC 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 210, 298
Bst6I CTCTTC 2 cut(s) 300, 657
BstAPI GCANNNNNTGC 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 647
BstFNI CGCG 1 cut(s) 422
BstHHI GCGC 1 cut(s) 422
BstKTI GATC 1 cut(s) 99
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 96
BstMWI GCNNNNNNNGC 4 cut(s) 130, 300, 475, 686
BstSLI GKGCMC 1 cut(s) 385
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 2 cut(s) 205, 664
Bsu15I ATCGAT 1 cut(s) 99
BsuRI GGCC 3 cut(s) 209, 383, 493
BsuTUI ATCGAT 1 cut(s) 99
BtrI CACGTC 1 cut(s) 378
CfoI GCGC 1 cut(s) 422
Cfr10I RCCGGY 3 cut(s) 49, 67, 80
Cfr13I GGNCC 4 cut(s) 65, 381, 382, 616
ClaI ATCGAT 1 cut(s) 99
CseI GACGC 1 cut(s) 283
CspAI ACCGGT 3 cut(s) 49, 67, 80
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 1 cut(s) 470
CviJI RGCY 9 cut(s) 124, 133, 196, 209, 383, 493, 591, 677, 689
CviKI_1 RGCY 9 cut(s) 124, 133, 196, 209, 383, 493, 591, 677, 689
DdeI CTNAG 1 cut(s) 647
DpnI GATC 1 cut(s) 98
DpnII GATC 1 cut(s) 96
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 300, 657
EarI CTCTTC 2 cut(s) 300, 657
Eco130I CCWWGG 2 cut(s) 210, 298
Eco24I GRGCYC 1 cut(s) 385
Eco47I GGWCC 2 cut(s) 65, 616
EcoO109I RGGNCCY 2 cut(s) 382, 616
EcoT14I CCWWGG 2 cut(s) 210, 298
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 2 cut(s) 210, 298
FaeI CATG 1 cut(s) 473
FaqI GGGAC 2 cut(s) 190, 629
FatI CATG 1 cut(s) 469
FauI CCCGC 2 cut(s) 321, 431
FblI GTMKAC 1 cut(s) 710
Fnu4HI GCNGC 3 cut(s) 194, 494, 678
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 3 cut(s) 194, 494, 678
FspBI CTAG 2 cut(s) 365, 530
GlaI GCGC 1 cut(s) 421
GluI GCNGC 3 cut(s) 194, 494, 678
HaeIII GGCC 3 cut(s) 209, 383, 493
HapII CCGG 4 cut(s) 50, 59, 68, 81
HgaI GACGC 1 cut(s) 283
HhaI GCGC 1 cut(s) 422
Hin1II CATG 1 cut(s) 473
Hin6I GCGC 1 cut(s) 420
HinP1I GCGC 1 cut(s) 420
HincII GTYRAC 1 cut(s) 414
HindII GTYRAC 1 cut(s) 414
HinfI GANTC 4 cut(s) 178, 256, 403, 750
HpaII CCGG 4 cut(s) 50, 59, 68, 81
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 2 cut(s) 414, 711
Hpy188I TCNGA 1 cut(s) 483
Hpy188III TCNNGA 4 cut(s) 218, 253, 341, 754
Hpy8I GTNNAC 2 cut(s) 414, 711
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 4 cut(s) 568, 620, 629, 739
HpyCH4IV ACGT 2 cut(s) 377, 597
HpyCH4V TGCA 2 cut(s) 469, 551
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 300, 475, 686
HpyF3I CTNAG 1 cut(s) 647
HpySE526I ACGT 2 cut(s) 377, 597
Hsp92II CATG 1 cut(s) 473
HspAI GCGC 1 cut(s) 420
Kzo9I GATC 1 cut(s) 96
LpnPI CCDG 6 cut(s) 63, 72, 81, 94, 374, 394
Lsp1109I GCAGC 2 cut(s) 205, 664
LweI GCATC 1 cut(s) 471
MaeI CTAG 2 cut(s) 365, 530
MaeII ACGT 2 cut(s) 377, 597
MaeIII GTNAC 1 cut(s) 717
MalI GATC 1 cut(s) 98
MbiI CCGCTC 1 cut(s) 496
MboI GATC 1 cut(s) 96
MboII GAAGA 6 cut(s) 286, 317, 664, 667, 674, 710
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 3 cut(s) 221, 641, 683
MlyI GAGTC 3 cut(s) 172, 265, 744
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 7 cut(s) 26, 32, 111, 489, 629, 667, 721
MseI TTAA 2 cut(s) 8, 542
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 4 cut(s) 50, 59, 68, 81
Mva1269I GAATGC 1 cut(s) 283
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 4 cut(s) 130, 300, 475, 686
NdeII GATC 1 cut(s) 96
NlaIII CATG 1 cut(s) 473
NlaIV GGNNCC 3 cut(s) 383, 384, 617
NmuCI GTSAC 1 cut(s) 717
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 403
PinAI ACCGGT 3 cut(s) 49, 67, 80
PkrI GCNGC 3 cut(s) 195, 495, 679
PleI GAGTC 3 cut(s) 172, 264, 744
PpsI GAGTC 3 cut(s) 172, 264, 744
PpuMI RGGWCCY 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 616
PspN4I GGNNCC 3 cut(s) 383, 384, 617
PspOMI GGGCCC 1 cut(s) 381
PspPI GGNCC 4 cut(s) 65, 381, 382, 616
PspPPI RGGWCCY 1 cut(s) 616
PvuII CAGCTG 1 cut(s) 196
SaqAI TTAA 2 cut(s) 8, 542
SatI GCNGC 3 cut(s) 194, 494, 678
Sau3AI GATC 1 cut(s) 96
Sau96I GGNCC 4 cut(s) 65, 381, 382, 616
SchI GAGTC 3 cut(s) 172, 265, 744
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 471
SinI GGWCC 2 cut(s) 65, 616
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
SpeI ACTAGT 1 cut(s) 529
Sse9I AATT 3 cut(s) 221, 641, 683
SsiI CCGC 3 cut(s) 314, 438, 494
SspMI CTAG 2 cut(s) 365, 530
StyI CCWWGG 2 cut(s) 210, 298
TaiI ACGT 2 cut(s) 380, 600
TaqI TCGA 3 cut(s) 99, 393, 449
TasI AATT 3 cut(s) 221, 641, 683
TauI GCSGC 1 cut(s) 496
TfiI GAWTC 1 cut(s) 403
Tru1I TTAA 2 cut(s) 8, 542
Tru9I TTAA 2 cut(s) 8, 542
TseFI GTSAC 1 cut(s) 717
TseI GCWGC 2 cut(s) 193, 677
Tsp45I GTSAC 1 cut(s) 717
TspDTI ATGAA 4 cut(s) 150, 287, 530, 648
VpaK11BI GGWCC 2 cut(s) 65, 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XmiI GTMKAC 1 cut(s) 710
XspI CTAG 2 cut(s) 365, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.