MD06G1103700.v1.1

Belongs to the WD repeat SEC13 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
24176846 .. 24179550
2705 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1103700.v1.1.491

Sequence Viewer

Length: 978 bp
ATGGAGAAACCTTTGGTGGCGCTTGATAAAGGCACCATCTGCTCGTCGTGGAACTACTCCGGCCAGAGATTAGCCAGTGGTTCCGTCGACGGAACCCTCGCCATCTTCGACTCACGCGACTCTTGTTCTTCGTCCTTCTCCTGCACCTCAAAATCCAAGGTGCACGAGGCTGCTGGAATTGTGAAAATTGCTTGGGTTCCACCGGAATTCGGCGATGCAGTGGCGTGTGTATGTGCAGATGGGACTTTATCATTGTGGGAGGAAGTTGCTGAAGATGCTCCTCTTCAATGGAAGCTGTGCACAAGCTTTAATAGCGGTTCAGCTCAACTGCTAGATACCCAATTTGGAGTCTCACCGGCAGGTTTAAAAATGGTTACTGCATATTCAGATGCCCGTGTCAAGGTCTATGAGCTACTGGATCCCTTGGAACTGAAGAATTGGCAGCTTCAGGCTGAATTTCAGAATGTTATTGATTCGGTGTCTACAGTTGGCCATGCCATATGCTTATCTGCATCTATATCTTGGAATCCACAAAGAGGAGAAAGCCAGGAATCAAGTTTTGTTTTGGGTTTCAATTCAAACACACCACAACTTAATTCCGCCAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTCCCAGTTGCAGAGTTGGTTTCGCCTGTTGACAATGGTGATCAGGTCTATGCAGTTGCATGGGCACCGAACATTGGAAGGCCATATGAGGTGATTGCTGTTGCCACTCACAAGGGAATATCAATATGGCATCTTGGGTTAAACCCTGACTTGGATGGAAGGCTCTCATTGGAGAAGATTGCACAACTTTCAGGTCACAATGGCGAGGTCTGGCAGATGGAATGGGACATGAGTGGAATGACATTGGCAACCACCGGAAATGATGGGGCTGTACGGTTGTGGCAGTCTAGTTTGAACGGAGTTTGGCATGAAGAGGCTACTTTTGAACCCACTTCGTAG

Protein Analysis

326

Amino Acids

35.37

Weight (kDa)

4.66

Isoelectric Point (pI)

38.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 16 - 149 1.4e-08 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 195 - 308 7.1e-06 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 228 - 308 3.8e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 350
AccB1I GGYRCC 2 cut(s) 32, 703
AccB7I CCANNNNNTGG 1 cut(s) 609
AccI GTMKAC 2 cut(s) 87, 482
AccII CGCG 1 cut(s) 117
AciI CCGC 2 cut(s) 315, 600
AclWI GGATC 2 cut(s) 413, 426
AcoI YGGCCR 2 cut(s) 61, 490
AcsI RAATTY 3 cut(s) 206, 455, 614
AcuI CTGAAG 3 cut(s) 291, 431, 452
AfaI GTAC 1 cut(s) 912
AfiI CCNNNNNNNGG 6 cut(s) 209, 400, 536, 609, 713, 790
AgsI TTSAA 5 cut(s) 287, 574, 579, 934, 965
AjnI CCWGG 1 cut(s) 546
AluBI AGCT 5 cut(s) 295, 306, 323, 412, 445
AluI AGCT 5 cut(s) 295, 306, 323, 412, 445
Alw21I GWGCWC 2 cut(s) 165, 302
Alw26I GTCTC 1 cut(s) 355
Alw44I GTGCAC 2 cut(s) 161, 298
AlwI GGATC 2 cut(s) 413, 426
AoxI GGCC 3 cut(s) 61, 490, 719
ApaLI GTGCAC 2 cut(s) 161, 298
ApeKI GCWGC 2 cut(s) 170, 442
ApoI RAATTY 3 cut(s) 206, 455, 614
AspLEI GCGC 1 cut(s) 22
AsuHPI GGTGA 3 cut(s) 345, 689, 742
BaeGI GKGCMC 3 cut(s) 165, 302, 706
BalI TGGCCA 1 cut(s) 492
BamHI GGATCC 1 cut(s) 418
BanI GGYRCC 2 cut(s) 32, 703
BauI CACGAG 1 cut(s) 164
Bbv12I GWGCWC 2 cut(s) 165, 302
BbvI GCAGC 2 cut(s) 157, 454
BccI CCATC 7 cut(s) 44, 110, 233, 630, 788, 850, 896
BciT130I CCWGG 1 cut(s) 548
BclI TGATCA 2 cut(s) 619, 679
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 2 cut(s) 332, 927
BfmI CTRYAG 1 cut(s) 483
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 350
BisI GCNGC 2 cut(s) 171, 443
BlsI GCNGC 2 cut(s) 172, 444
Bme1390I CCNGG 1 cut(s) 548
BmiI GGNNCC 7 cut(s) 34, 82, 94, 198, 420, 641, 705
BmrFI CCNGG 1 cut(s) 548
BmrI ACTGGG 1 cut(s) 638
BmsI GCATC 5 cut(s) 205, 265, 379, 521, 778
BmuI ACTGGG 1 cut(s) 638
BsaJI CCNNGG 3 cut(s) 156, 423, 603
BsaWI WCCGGW 2 cut(s) 202, 893
Bsc4I CCNNNNNNNGG 6 cut(s) 209, 400, 536, 609, 713, 790
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 3 cut(s) 75, 420, 644
BseBI CCWGG 1 cut(s) 548
BseDI CCNNGG 3 cut(s) 156, 423, 603
BseGI GGATG 1 cut(s) 799
BseLI CCNNNNNNNGG 6 cut(s) 209, 400, 536, 609, 713, 790
BseNI ACTGG 3 cut(s) 75, 420, 644
BseRI GAGGAG 2 cut(s) 270, 552
BseSI GKGCMC 3 cut(s) 165, 302, 706
BseXI GCAGC 2 cut(s) 157, 454
BsgI GTGCAG 2 cut(s) 127, 255
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 63, 492, 721
BshNI GGYRCC 2 cut(s) 32, 703
BsiHKAI GWGCWC 2 cut(s) 165, 302
BsiSI CCGG 4 cut(s) 60, 203, 356, 894
BslFI GGGAC 2 cut(s) 256, 878
BslI CCNNNNNNNGG 6 cut(s) 209, 400, 536, 609, 713, 790
BsmAI GTCTC 1 cut(s) 355
BsmFI GGGAC 2 cut(s) 256, 878
BsnI GGCC 3 cut(s) 63, 492, 721
Bsp1286I GDGCHC 3 cut(s) 165, 302, 706
Bsp143I GATC 3 cut(s) 418, 619, 679
BspACI CCGC 2 cut(s) 315, 600
BspANI GGCC 3 cut(s) 63, 492, 721
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 7 cut(s) 34, 82, 94, 198, 420, 641, 705
BspMI ACCTGC 1 cut(s) 350
BspPI GGATC 2 cut(s) 413, 426
BspT107I GGYRCC 2 cut(s) 32, 703
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 3 cut(s) 75, 420, 644
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 156, 423, 603
BssMI GATC 3 cut(s) 418, 619, 679
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 3 cut(s) 156, 423, 603
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 548
Bst4CI ACNGT 2 cut(s) 487, 915
Bst6I CTCTTC 2 cut(s) 288, 945
BstAPI GCANNNNNTGC 1 cut(s) 39
BstF5I GGATG 1 cut(s) 799
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 3 cut(s) 421, 622, 682
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 3 cut(s) 418, 619, 679
BstMWI GCNNNNNNNGC 3 cut(s) 39, 275, 312
BstNI CCWGG 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 546
BstSFI CTRYAG 1 cut(s) 483
BstSLI GKGCMC 3 cut(s) 165, 302, 706
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 157, 454
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 3 cut(s) 63, 492, 721
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 1 cut(s) 799
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 82, 225
BveI ACCTGC 1 cut(s) 350
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 355
Csp6I GTAC 1 cut(s) 911
CviAII CATG 4 cut(s) 494, 699, 868, 947
CviQI GTAC 1 cut(s) 911
DpnI GATC 3 cut(s) 420, 621, 681
DpnII GATC 3 cut(s) 418, 619, 679
DraI TTTAAA 1 cut(s) 366
EaeI YGGCCR 2 cut(s) 61, 490
Eam1104I CTCTTC 2 cut(s) 288, 945
EarI CTCTTC 2 cut(s) 288, 945
EciI GGCGGA 1 cut(s) 589
Eco130I CCWWGG 3 cut(s) 156, 423, 603
Eco57I CTGAAG 3 cut(s) 291, 431, 452
EcoRI GAATTC 1 cut(s) 206
EcoRII CCWGG 1 cut(s) 546
EcoT14I CCWWGG 3 cut(s) 156, 423, 603
ErhI CCWWGG 3 cut(s) 156, 423, 603
FaeI CATG 4 cut(s) 497, 702, 871, 950
FaqI GGGAC 2 cut(s) 256, 878
FatI CATG 4 cut(s) 493, 698, 867, 946
FauNDI CATATG 2 cut(s) 500, 724
FbaI TGATCA 2 cut(s) 619, 679
FblI GTMKAC 2 cut(s) 87, 482
Fnu4HI GCNGC 2 cut(s) 171, 443
FokI GGATG 1 cut(s) 806
Fsp4HI GCNGC 2 cut(s) 171, 443
FspBI CTAG 2 cut(s) 332, 927
GlaI GCGC 1 cut(s) 21
GluI GCNGC 2 cut(s) 171, 443
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 3 cut(s) 63, 492, 721
HapII CCGG 4 cut(s) 60, 203, 356, 894
HhaI GCGC 1 cut(s) 22
Hin1II CATG 4 cut(s) 497, 702, 871, 950
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HincII GTYRAC 2 cut(s) 88, 670
HindII GTYRAC 2 cut(s) 88, 670
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 6 cut(s) 110, 119, 348, 473, 526, 551
HpaII CCGG 4 cut(s) 60, 203, 356, 894
HphI GGTGA 3 cut(s) 345, 689, 742
Hpy166II GTNNAC 5 cut(s) 88, 163, 300, 483, 670
Hpy188I TCNGA 2 cut(s) 388, 462
Hpy8I GTNNAC 5 cut(s) 88, 163, 300, 483, 670
Hpy99I CGWCG 3 cut(s) 49, 89, 92
HpyAV CCTTC 3 cut(s) 145, 711, 792
HpyCH4III ACNGT 2 cut(s) 487, 915
HpyF10VI GCNNNNNNNGC 3 cut(s) 39, 275, 312
Hsp92II CATG 4 cut(s) 497, 702, 871, 950
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 2 cut(s) 619, 679
Kzo9I GATC 3 cut(s) 418, 619, 679
LmnI GCTCC 2 cut(s) 283, 645
Lsp1109I GCAGC 2 cut(s) 157, 454
LweI GCATC 5 cut(s) 205, 265, 379, 521, 778
MaeI CTAG 2 cut(s) 332, 927
MaeIII GTNAC 2 cut(s) 373, 833
MalI GATC 3 cut(s) 420, 621, 681
MboI GATC 3 cut(s) 418, 619, 679
MboII GAAGA 7 cut(s) 97, 120, 275, 284, 445, 826, 962
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 3 cut(s) 165, 302, 706
MlsI TGGCCA 1 cut(s) 492
MluCI AATT 9 cut(s) 177, 186, 206, 341, 436, 455, 574, 595, 614
MluNI TGGCCA 1 cut(s) 492
MlyI GAGTC 3 cut(s) 104, 113, 357
MnlI CCTC 9 cut(s) 107, 157, 160, 253, 291, 530, 721, 838, 946
Mox20I TGGCCA 1 cut(s) 492
MscI TGGCCA 1 cut(s) 492
MseI TTAA 4 cut(s) 309, 365, 594, 779
Msp20I TGGCCA 1 cut(s) 492
MspI CCGG 4 cut(s) 60, 203, 356, 894
MspR9I CCNGG 1 cut(s) 548
MvaI CCWGG 1 cut(s) 548
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 3 cut(s) 39, 275, 312
NdeI CATATG 2 cut(s) 500, 724
NdeII GATC 3 cut(s) 418, 619, 679
NlaIII CATG 4 cut(s) 497, 702, 871, 950
NlaIV GGNNCC 7 cut(s) 34, 82, 94, 198, 420, 641, 705
NmuCI GTSAC 1 cut(s) 833
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 114
PfeI GAWTC 3 cut(s) 473, 526, 551
PflMI CCANNNNNTGG 1 cut(s) 609
PkrI GCNGC 2 cut(s) 172, 444
PleI GAGTC 3 cut(s) 104, 113, 356
PpsI GAGTC 3 cut(s) 104, 113, 356
Psp6I CCWGG 1 cut(s) 546
PspGI CCWGG 1 cut(s) 546
PspN4I GGNNCC 7 cut(s) 34, 82, 94, 198, 420, 641, 705
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 1 cut(s) 912
RsaNI GTAC 1 cut(s) 911
SalI GTCGAC 1 cut(s) 86
SaqAI TTAA 4 cut(s) 309, 365, 594, 779
SatI GCNGC 2 cut(s) 171, 443
Sau3AI GATC 3 cut(s) 418, 619, 679
SchI GAGTC 3 cut(s) 104, 113, 357
ScrFI CCNGG 1 cut(s) 548
SduI GDGCHC 3 cut(s) 165, 302, 706
SfaNI GCATC 5 cut(s) 205, 265, 379, 521, 778
SfcI CTRYAG 1 cut(s) 483
SgrDI CGTCGACG 1 cut(s) 86
Sse9I AATT 9 cut(s) 177, 186, 206, 341, 436, 455, 574, 595, 614
SsiI CCGC 2 cut(s) 315, 600
SspMI CTAG 2 cut(s) 332, 927
StyD4I CCNGG 1 cut(s) 546
StyI CCWWGG 3 cut(s) 156, 423, 603
TaaI ACNGT 2 cut(s) 487, 915
TaqI TCGA 2 cut(s) 87, 108
TasI AATT 9 cut(s) 177, 186, 206, 341, 436, 455, 574, 595, 614
TfiI GAWTC 3 cut(s) 473, 526, 551
Tru1I TTAA 4 cut(s) 309, 365, 594, 779
Tru9I TTAA 4 cut(s) 309, 365, 594, 779
TscAI CASTG 2 cut(s) 82, 225
TseFI GTSAC 1 cut(s) 833
TseI GCWGC 2 cut(s) 170, 442
Tsp45I GTSAC 1 cut(s) 833
TspDTI ATGAA 1 cut(s) 963
TspGWI ACGGA 3 cut(s) 73, 105, 951
TspRI CASTG 2 cut(s) 82, 225
Van91I CCANNNNNTGG 1 cut(s) 609
VneI GTGCAC 2 cut(s) 161, 298
XapI RAATTY 3 cut(s) 206, 455, 614
XmiI GTMKAC 2 cut(s) 87, 482
XspI CTAG 2 cut(s) 332, 927
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.