Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0000558

Physical Location & Seq

Genomic Coordinates Forward (+)

11842877 .. 11845602

Gene Structure 2726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G116300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGAGAAACCTCTGGTGGCACTTGATAAAGGCACCACCTGCTCGTCGTGGAACTACTCCAGCCAGAGATTGGCCACTGGCTCAGTCGACGGAACGCTCGCCATCTTCGACACGCGCGACCCAGCTTCTTCCTCTTTCTCCTGCACTTCAAAATCGAAGGTGCATGAGGCTGCTGGCATTGTGAAAATTGTTTGGGTTCCTCCAGAGTATGGTGATGCAGTGGCATGTGTTTGCGCAGATGGAACTTTGTCTCTGTGGGAGGAGGCTGCTGAAGATGCGCAACCTATTCAATGGAAGCTCTGCACAAGCTTTAAAAGTGGGTCCGCTCAACTGCTAGATACCCAATTTGGAGTCTCACCGTCAGGTTTAAAAATGGTTACTGCATATTCTGATGGCCATGTCAAGGTTTATGAGCTACTAGACCCCTTGGATCTGAAGAATTGGCAACTTCAGGCTGAATTTCAGAATGTTATTGATTCAGTGTCTACGTTTGGGAAAGCCATGTGCTTAGCTGCATCTATATCTTGGAATCCACAAAGAGGAGAGAGCCAGGAATCCAGCTTTGTTTTGGGTTTCAATTCAAACACACCACAACTTAATTCTTCCAAGGTATGGGAATTTGATCAGGCTCATCAAAGATGGCTCCCAGTTGCAGAGTTGGCTTTGCCTGGTGACAACAGTGATCAGGTCTATGCTGTTGCATGGGCACCAAACATTGGCAGGCCCTATGAGGTAATTGCTGTTGCCACTGACAAGGGAATAGCAATATGGCATCTTGGATTAAACCCTGACTCAGATGGAAGGCTCTCATTGGAGAAGATTGCACAACTTTCAGGACACAACGGCGAGGTCTGGCAGATGGAATGGGACATGAGTGGGATGACATTGGCGACCACCGGGAATGATGGGGCAGTACGGTTGTGGCAGTCTAATTTGAACGGCGTTTGGCATGAAGAGGCTACATTTGAACCCACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000323 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005737 GO:0005764 GO:0005765 GO:0005773 GO:0005774 GO:0006996 GO:0006997 GO:0006999 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0022402 GO:0031080 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0071840 GO:0098588 GO:0098805 GO:0098813 GO:0098852 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

ko03013 ko04150 map03013 map04150

Pfam Domains

Protein Families

WD40

Protein Analysis

327

Amino Acids

35.53

Weight (kDa)

4.61

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000558)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64350
fragaria_vesca	FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica	MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica	Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis	pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis	RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata	RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora	Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii	Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa	Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha	Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana	Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	47
Acc16I	TGCGCA	2 cut(s)	235, 279
Acc36I	ACCTGC	1 cut(s)	47
AccB1I	GGYRCC	2 cut(s)	32, 706
AccB7I	CCANNNNNTGG	4 cut(s)	70, 209, 612, 716
AccBSI	CCGCTC	1 cut(s)	326
AccI	GTMKAC	2 cut(s)	87, 485
AccII	CGCG	2 cut(s)	115, 117
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	438
AcoI	YGGCCR	2 cut(s)	72, 394
AcsI	RAATTY	2 cut(s)	458, 617
AcuI	CTGAAG	3 cut(s)	291, 434, 455
AfaI	GTAC	1 cut(s)	915
AfiI	CCNNNNNNNGG	6 cut(s)	70, 209, 403, 539, 612, 716
AgsI	TTSAA	6 cut(s)	150, 290, 577, 582, 937, 968
AjnI	CCWGG	2 cut(s)	549, 667
AluBI	AGCT	6 cut(s)	125, 298, 309, 415, 512, 561
AluI	AGCT	6 cut(s)	125, 298, 309, 415, 512, 561
Alw26I	GTCTC	2 cut(s)	255, 358
AlwI	GGATC	1 cut(s)	438
AoxI	GGCC	3 cut(s)	72, 394, 722
ApeKI	GCWGC	3 cut(s)	170, 266, 512
ApoI	RAATTY	2 cut(s)	458, 617
AspLEI	GCGC	3 cut(s)	117, 236, 280
AspS9I	GGNCC	2 cut(s)	321, 723
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	3 cut(s)	224, 348, 683
AvaII	GGWCC	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	709
BalI	TGGCCA	2 cut(s)	74, 396
BanI	GGYRCC	2 cut(s)	32, 706
BbvI	GCAGC	3 cut(s)	157, 253, 499
BccI	CCATC	7 cut(s)	110, 233, 386, 633, 791, 853, 899
BceAI	ACGGC	2 cut(s)	859, 955
BciT130I	CCWGG	2 cut(s)	551, 669
BclI	TGATCA	2 cut(s)	622, 682
BcnI	CCSGG	1 cut(s)	898
BcoDI	GTCTC	2 cut(s)	255, 358
BfaI	CTAG	3 cut(s)	335, 419, 979
BfuAI	ACCTGC	1 cut(s)	47
BisI	GCNGC	3 cut(s)	171, 267, 513
BlpI	GCTNAGC	1 cut(s)	508
BlsI	GCNGC	3 cut(s)	172, 268, 514
Bme1390I	CCNGG	3 cut(s)	551, 669, 898
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	321, 723
BmiI	GGNNCC	5 cut(s)	34, 198, 322, 644, 708
BmrFI	CCNGG	3 cut(s)	551, 669, 898
BmrI	ACTGGG	1 cut(s)	641
BmsI	GCATC	4 cut(s)	205, 265, 524, 781
BmuI	ACTGGG	1 cut(s)	641
BpmI	CTGGAG	2 cut(s)	43, 186
Bpu1102I	GCTNAGC	1 cut(s)	508
BpuMI	CCSGG	1 cut(s)	898
BsaJI	CCNNGG	2 cut(s)	426, 606
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 209, 403, 539, 612, 716
Bse1I	ACTGG	2 cut(s)	82, 647
BseBI	CCWGG	2 cut(s)	551, 669
BseDI	CCNNGG	2 cut(s)	426, 606
BseGI	GGATG	1 cut(s)	885
BseLI	CCNNNNNNNGG	6 cut(s)	70, 209, 403, 539, 612, 716
BseMII	CTCAG	2 cut(s)	96, 807
BseNI	ACTGG	2 cut(s)	82, 647
BseRI	GAGGAG	2 cut(s)	275, 555
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	3 cut(s)	157, 253, 499
BseYI	CCCAGC	1 cut(s)	121
BsgI	GTGCAG	2 cut(s)	127, 286
Bsh1236I	CGCG	2 cut(s)	115, 117
BshFI	GGCC	3 cut(s)	74, 396, 724
BshNI	GGYRCC	2 cut(s)	32, 706
BsiSI	CCGG	1 cut(s)	897
BslFI	GGGAC	1 cut(s)	881
BslI	CCNNNNNNNGG	6 cut(s)	70, 209, 403, 539, 612, 716
BsmAI	GTCTC	2 cut(s)	255, 358
BsmFI	GGGAC	1 cut(s)	881
BsnI	GGCC	3 cut(s)	74, 396, 724
Bsp1286I	GDGCHC	1 cut(s)	709
Bsp143I	GATC	3 cut(s)	430, 622, 682
Bsp1720I	GCTNAGC	1 cut(s)	508
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	3 cut(s)	74, 396, 724
BspCNI	CTCAG	2 cut(s)	95, 806
BspFNI	CGCG	2 cut(s)	115, 117
BspLI	GGNNCC	5 cut(s)	34, 198, 322, 644, 708
BspMI	ACCTGC	1 cut(s)	47
BspPI	GGATC	1 cut(s)	438
BspT107I	GGYRCC	2 cut(s)	32, 706
BsrBI	CCGCTC	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	82, 647
BssECI	CCNNGG	2 cut(s)	426, 606
BssMI	GATC	3 cut(s)	430, 622, 682
BssT1I	CCWWGG	2 cut(s)	426, 606
Bst2UI	CCWGG	2 cut(s)	551, 669
Bst4CI	ACNGT	3 cut(s)	360, 680, 918
Bst6I	CTCTTC	1 cut(s)	948
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstC8I	GCNNGC	3 cut(s)	99, 175, 722
BstDEI	CTNAG	3 cut(s)	82, 508, 793
BstF5I	GGATG	1 cut(s)	885
BstFNI	CGCG	2 cut(s)	115, 117
BstHHI	GCGC	3 cut(s)	117, 236, 280
BstKTI	GATC	3 cut(s)	433, 625, 685
BstMAI	GTCTC	2 cut(s)	255, 358
BstMBI	GATC	3 cut(s)	430, 622, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 275, 659
BstNI	CCWGG	2 cut(s)	551, 669
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	3 cut(s)	549, 667, 896
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	2 cut(s)	115, 117
BstV1I	GCAGC	3 cut(s)	157, 253, 499
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	3 cut(s)	74, 396, 724
BtsCI	GGATG	1 cut(s)	885
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	5 cut(s)	75, 225, 486, 685, 747
BveI	ACCTGC	1 cut(s)	47
Cac8I	GCNNGC	3 cut(s)	99, 175, 722
CfoI	GCGC	3 cut(s)	117, 236, 280
Cfr13I	GGNCC	2 cut(s)	321, 723
Csp6I	GTAC	1 cut(s)	914
CviAII	CATG	7 cut(s)	164, 225, 398, 502, 702, 871, 950
CviQI	GTAC	1 cut(s)	914
DdeI	CTNAG	3 cut(s)	82, 508, 793
DpnI	GATC	3 cut(s)	432, 624, 684
DpnII	GATC	3 cut(s)	430, 622, 682
DraI	TTTAAA	2 cut(s)	313, 369
EaeI	YGGCCR	2 cut(s)	72, 394
Eam1104I	CTCTTC	1 cut(s)	948
EarI	CTCTTC	1 cut(s)	948
Eco130I	CCWWGG	2 cut(s)	426, 606
Eco47I	GGWCC	1 cut(s)	321
Eco57I	CTGAAG	3 cut(s)	291, 434, 455
EcoO109I	RGGNCCY	1 cut(s)	723
EcoRII	CCWGG	2 cut(s)	549, 667
EcoT14I	CCWWGG	2 cut(s)	426, 606
ErhI	CCWWGG	2 cut(s)	426, 606
FaeI	CATG	7 cut(s)	167, 228, 401, 505, 705, 874, 953
FaqI	GGGAC	1 cut(s)	881
FatI	CATG	7 cut(s)	163, 224, 397, 501, 701, 870, 949
FbaI	TGATCA	2 cut(s)	622, 682
FblI	GTMKAC	2 cut(s)	87, 485
Fnu4HI	GCNGC	3 cut(s)	171, 267, 513
FokI	GGATG	1 cut(s)	892
Fsp4HI	GCNGC	3 cut(s)	171, 267, 513
FspBI	CTAG	3 cut(s)	335, 419, 979
FspI	TGCGCA	2 cut(s)	235, 279
GlaI	GCGC	3 cut(s)	116, 235, 279
GluI	GCNGC	3 cut(s)	171, 267, 513
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	2 cut(s)	43, 186
HaeIII	GGCC	3 cut(s)	74, 396, 724
HapII	CCGG	1 cut(s)	897
HhaI	GCGC	3 cut(s)	117, 236, 280
Hin1II	CATG	7 cut(s)	167, 228, 401, 505, 705, 874, 953
Hin6I	GCGC	3 cut(s)	115, 234, 278
HinP1I	GCGC	3 cut(s)	115, 234, 278
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	307
HinfI	GANTC	5 cut(s)	351, 476, 529, 554, 791
HpaII	CCGG	1 cut(s)	897
HphI	GGTGA	3 cut(s)	224, 348, 683
Hpy166II	GTNNAC	2 cut(s)	88, 486
Hpy188I	TCNGA	4 cut(s)	391, 435, 465, 796
Hpy188III	TCNNGA	2 cut(s)	203, 834
Hpy8I	GTNNAC	2 cut(s)	88, 486
Hpy99I	CGWCG	2 cut(s)	49, 92
HpyAV	CCTTC	2 cut(s)	151, 795
HpyCH4III	ACNGT	3 cut(s)	360, 680, 918
HpyCH4IV	ACGT	1 cut(s)	488
HpyCH4V	TGCA	9 cut(s)	144, 163, 218, 303, 383, 515, 653, 701, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 275, 659
HpyF3I	CTNAG	3 cut(s)	82, 508, 793
HpySE526I	ACGT	1 cut(s)	488
Hsp92II	CATG	7 cut(s)	167, 228, 401, 505, 705, 874, 953
HspAI	GCGC	3 cut(s)	115, 234, 278
Ksp22I	TGATCA	2 cut(s)	622, 682
Kzo9I	GATC	3 cut(s)	430, 622, 682
LmnI	GCTCC	1 cut(s)	648
Lsp1109I	GCAGC	3 cut(s)	157, 253, 499
LweI	GCATC	4 cut(s)	205, 265, 524, 781
MaeI	CTAG	3 cut(s)	335, 419, 979
MaeII	ACGT	1 cut(s)	488
MaeIII	GTNAC	2 cut(s)	376, 671
MalI	GATC	3 cut(s)	432, 624, 684
MbiI	CCGCTC	1 cut(s)	326
MboI	GATC	3 cut(s)	430, 622, 682
MboII	GAAGA	7 cut(s)	97, 120, 284, 448, 594, 829, 965
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	709
MlsI	TGGCCA	2 cut(s)	74, 396
MluCI	AATT	9 cut(s)	186, 344, 439, 458, 577, 598, 617, 735, 931
MluNI	TGGCCA	2 cut(s)	74, 396
MlyI	GAGTC	2 cut(s)	360, 785
Mox20I	TGGCCA	2 cut(s)	74, 396
MscI	TGGCCA	2 cut(s)	74, 396
MseI	TTAA	4 cut(s)	312, 368, 597, 782
Msp20I	TGGCCA	2 cut(s)	74, 396
MspI	CCGG	1 cut(s)	897
MspR9I	CCNGG	3 cut(s)	551, 669, 898
MvaI	CCWGG	2 cut(s)	551, 669
MvnI	CGCG	2 cut(s)	115, 117
MwoI	GCNNNNNNNGC	3 cut(s)	39, 275, 659
NciI	CCSGG	1 cut(s)	898
NdeII	GATC	3 cut(s)	430, 622, 682
NlaIII	CATG	7 cut(s)	167, 228, 401, 505, 705, 874, 953
NlaIV	GGNNCC	5 cut(s)	34, 198, 322, 644, 708
NmuCI	GTSAC	1 cut(s)	671
NsbI	TGCGCA	2 cut(s)	235, 279
NspI	RCATGY	1 cut(s)	228
PaqCI	CACCTGC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 114
PfeI	GAWTC	3 cut(s)	476, 529, 554
PflMI	CCANNNNNTGG	4 cut(s)	70, 209, 612, 716
PkrI	GCNGC	3 cut(s)	172, 268, 514
PleI	GAGTC	2 cut(s)	359, 785
PpsI	GAGTC	2 cut(s)	359, 785
Psp6I	CCWGG	2 cut(s)	549, 667
PspFI	CCCAGC	1 cut(s)	121
PspGI	CCWGG	2 cut(s)	549, 667
PspN4I	GGNNCC	5 cut(s)	34, 198, 322, 644, 708
PspPI	GGNCC	2 cut(s)	321, 723
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	1 cut(s)	915
RsaNI	GTAC	1 cut(s)	914
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	4 cut(s)	312, 368, 597, 782
SatI	GCNGC	3 cut(s)	171, 267, 513
Sau3AI	GATC	3 cut(s)	430, 622, 682
Sau96I	GGNCC	2 cut(s)	321, 723
SchI	GAGTC	2 cut(s)	360, 785
ScrFI	CCNGG	3 cut(s)	551, 669, 898
SduI	GDGCHC	1 cut(s)	709
SfaNI	GCATC	4 cut(s)	205, 265, 524, 781
SinI	GGWCC	1 cut(s)	321
Sse9I	AATT	9 cut(s)	186, 344, 439, 458, 577, 598, 617, 735, 931
SsiI	CCGC	1 cut(s)	324
SspMI	CTAG	3 cut(s)	335, 419, 979
StyD4I	CCNGG	3 cut(s)	549, 667, 896
StyI	CCWWGG	2 cut(s)	426, 606
TaaI	ACNGT	3 cut(s)	360, 680, 918
TaiI	ACGT	1 cut(s)	491
TaqI	TCGA	3 cut(s)	87, 108, 155
TasI	AATT	9 cut(s)	186, 344, 439, 458, 577, 598, 617, 735, 931
TfiI	GAWTC	3 cut(s)	476, 529, 554
Tru1I	TTAA	4 cut(s)	312, 368, 597, 782
Tru9I	TTAA	4 cut(s)	312, 368, 597, 782
TscAI	CASTG	5 cut(s)	82, 225, 486, 685, 754
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	3 cut(s)	170, 266, 512
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	1 cut(s)	966
TspGWI	ACGGA	1 cut(s)	105
TspRI	CASTG	5 cut(s)	82, 225, 486, 685, 754
Van91I	CCANNNNNTGG	4 cut(s)	70, 209, 612, 716
VpaK11BI	GGWCC	1 cut(s)	321
XapI	RAATTY	2 cut(s)	458, 617
XceI	RCATGY	1 cut(s)	228
XcmI	CCANNNNNNNNNTGG	2 cut(s)	67, 565
XmiI	GTMKAC	2 cut(s)	87, 485
XspI	CTAG	3 cut(s)	335, 419, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.