RLG00000004135

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000558
Physical Location & Seq
Forward (+)
56510918 .. 56514082
3165 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004135

Sequence Viewer

Length: 1092 bp
ATGAACCCGTGCCGACTCGACCCGTTGCGTACCAAAACCCTTTTTGACGAAGAGGTTTTAGTTCCTCCCCTCCTCAAGCACAGTCGGAGCTCCACGCACTTTACGACGGAGATGGAGAAATCTCTGGTGACGCTCGATAAAGGCACCACCTGCTCCTCTTGGAACTACTCCGGCCAGAGATTAGCCACCGGCTCCCTCGACGGAACTCTCACCATCTTCGACTCGCTCCACCCTTCTTCTTCCTCTTTCTCCTCCACCTCAAAATCCAAGGCGCACCACGCTTCTGCCATTGTCAAAGTTGTCTGGGTTCCTCCGGAGTTCGGTCACGCAGTGGCGTGTGTTTGCGGAGATGGAACGTTGTCGTTGTGGGAAGAGATTGTTGAAGATGCACAACCTCTTCAATGGAAGCTGTGCAAAAGCTTTAAAAGTGATTCGGCTCAGCTGCTAGATGTTCAATTTGGGGGTTCATCGTCTAGTTTGAAAATGGTTGCTGCATATTCAGACGGCAACGTCAAGCTCTACGAGCTGCCTGATCCATTGGAATTGAAAAACTGGCAGCTTCAGGCGGAAATTCAGAATGTTATTGATTCAGTGTCTACACTTGGGAAAGCTGTCTGCTTATCTGCATCTATATCATGGAATCCAAGAGGAGAAGAAAGCCAGGAATCAAGTTTTGTTTTGGGTTTCAATTCAGACACTCTACAACTTAATTCATCCAAGGTATGGGAATTTGATCAAGCTCATCAAAGATGGCTCCCAGTTGCGGAGTTGGCTTCTCCTAATGACAAGGGTGATCAGGTCTATGCAGTTGCCTGGGCACCAAACATTGGCAGGCCCTATGAGGTAATTGCTGTTGCCACTCACAAGGGAATATCAATATGGCATCTTGGATTAAACCCTGACTCAGATGGAAGGCTCTCTTCGGAGAAGGTTGCACAACTTTCTGGTCACAGAGGCGAGGTCTGGCAACTGGAGTGGGACATGAGTGGAATGACATTGGCATCCACTGGGAATGATGGGGTAGTACGGTTGTGGCAGTCTAATTTGAATGGCATTTGGCATGAAGAAGCTACTTTGGAACCCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

364

Amino Acids

39.86

Weight (kDa)

5.14

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 52 - 124 1.2e-07 THOC3 beta-propeller domain
Beta-prop_THOC3 PF25174 211 - 347 8.3e-07 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 239 - 346 5.7e-07 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 265 - 348 1.2e-06 CDC20/Fizzy WD40 domain
WD40 PF00400 309 - 345 7.2e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 158
AasI GACNNNNNNGTC 1 cut(s) 509
Acc36I ACCTGC 1 cut(s) 158
AccB1I GGYRCC 2 cut(s) 143, 817
AccB7I CCANNNNNTGG 2 cut(s) 723, 827
AccI GTMKAC 1 cut(s) 596
AccIII TCCGGA 1 cut(s) 313
AciI CCGC 3 cut(s) 345, 566, 764
AclI AACGTT 1 cut(s) 356
AclWI GGATC 1 cut(s) 527
AcoI YGGCCR 1 cut(s) 172
AcsI RAATTY 2 cut(s) 570, 728
AcuI CTGAAG 1 cut(s) 545
AdeI CACNNNGTG 1 cut(s) 331
AfaI GTAC 2 cut(s) 31, 1026
AfiI CCNNNNNNNGG 4 cut(s) 320, 723, 763, 827
AgsI TTSAA 7 cut(s) 383, 401, 455, 481, 547, 688, 1048
AjnI CCWGG 2 cut(s) 660, 812
Alw21I GWGCWC 1 cut(s) 92
AlwI GGATC 1 cut(s) 527
Aor13HI TCCGGA 1 cut(s) 313
AoxI GGCC 2 cut(s) 172, 833
ApeKI GCWGC 4 cut(s) 442, 491, 526, 556
ApoI RAATTY 2 cut(s) 570, 728
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 834
AsuHPI GGTGA 3 cut(s) 139, 202, 803
BaeGI GKGCMC 1 cut(s) 820
BanI GGYRCC 2 cut(s) 143, 817
BanII GRGCYC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 4 cut(s) 429, 478, 513, 568
BccI CCATC 6 cut(s) 106, 221, 344, 744, 902, 1010
BceAI ACGGC 1 cut(s) 520
BciT130I CCWGG 2 cut(s) 662, 814
BclI TGATCA 2 cut(s) 733, 793
BfaI CTAG 2 cut(s) 446, 474
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 4 cut(s) 443, 492, 527, 557
BlpI GCTNAGC 1 cut(s) 438
BlsI GCNGC 4 cut(s) 444, 493, 528, 558
Bme1390I CCNGG 2 cut(s) 662, 814
BmgT120I GGNCC 1 cut(s) 834
BmiI GGNNCC 6 cut(s) 145, 193, 309, 755, 819, 1080
BmrFI CCNGG 2 cut(s) 662, 814
BmrI ACTGGG 2 cut(s) 752, 1017
BmsI GCATC 4 cut(s) 376, 635, 892, 1010
BmuI ACTGGG 2 cut(s) 752, 1017
BpmI CTGGAG 1 cut(s) 992
Bpu1102I GCTNAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 59
BsaJI CCNNGG 3 cut(s) 267, 717, 813
BsaWI WCCGGW 1 cut(s) 313
Bsc4I CCNNNNNNNGG 4 cut(s) 320, 723, 763, 827
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 4 cut(s) 557, 758, 975, 1012
BseAI TCCGGA 1 cut(s) 313
BseBI CCWGG 2 cut(s) 662, 814
BseDI CCNNGG 3 cut(s) 267, 717, 813
BseGI GGATG 2 cut(s) 713, 1001
BseLI CCNNNNNNNGG 4 cut(s) 320, 723, 763, 827
BseMII CTCAG 2 cut(s) 452, 918
BseNI ACTGG 4 cut(s) 557, 758, 975, 1012
BseRI GAGGAG 4 cut(s) 62, 145, 241, 663
BseSI GKGCMC 1 cut(s) 820
BseXI GCAGC 4 cut(s) 429, 478, 513, 568
BshFI GGCC 2 cut(s) 174, 835
BshNI GGYRCC 2 cut(s) 143, 817
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 3 cut(s) 171, 189, 314
BslFI GGGAC 1 cut(s) 992
BslI CCNNNNNNNGG 4 cut(s) 320, 723, 763, 827
BsmFI GGGAC 1 cut(s) 992
BsnI GGCC 2 cut(s) 174, 835
Bsp1286I GDGCHC 2 cut(s) 92, 820
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 3 cut(s) 532, 733, 793
Bsp1720I GCTNAGC 1 cut(s) 438
BspACI CCGC 3 cut(s) 345, 566, 764
BspANI GGCC 2 cut(s) 174, 835
BspCNI CTCAG 2 cut(s) 451, 917
BspEI TCCGGA 1 cut(s) 313
BspLI GGNNCC 6 cut(s) 145, 193, 309, 755, 819, 1080
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 527
BspT107I GGYRCC 2 cut(s) 143, 817
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 4 cut(s) 557, 758, 975, 1012
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 3 cut(s) 267, 717, 813
BssMI GATC 3 cut(s) 532, 733, 793
BssT1I CCWWGG 2 cut(s) 267, 717
Bst2UI CCWGG 2 cut(s) 662, 814
Bst4CI ACNGT 2 cut(s) 83, 1029
Bst6I CTCTTC 4 cut(s) 45, 366, 402, 925
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 833
BstDEI CTNAG 3 cut(s) 438, 904, 1089
BstF5I GGATG 2 cut(s) 713, 1001
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 3 cut(s) 535, 736, 796
BstMBI GATC 3 cut(s) 532, 733, 793
BstMWI GCNNNNNNNGC 4 cut(s) 150, 278, 523, 770
BstNI CCWGG 2 cut(s) 662, 814
BstSCI CCNGG 2 cut(s) 660, 812
BstSLI GKGCMC 1 cut(s) 820
BstV1I GCAGC 4 cut(s) 429, 478, 513, 568
BsuRI GGCC 2 cut(s) 174, 835
BtsCI GGATG 2 cut(s) 713, 1001
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 3 cut(s) 336, 597, 1005
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 833
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 834
CseI GACGC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 30, 1025
CspCI CAANNNNNGTGG 2 cut(s) 956, 991
CviAII CATG 3 cut(s) 636, 982, 1061
CviQI GTAC 2 cut(s) 30, 1025
DdeI CTNAG 3 cut(s) 438, 904, 1089
DpnI GATC 3 cut(s) 534, 735, 795
DpnII GATC 3 cut(s) 532, 733, 793
DraI TTTAAA 1 cut(s) 424
DraIII CACNNNGTG 1 cut(s) 331
DrdI GACNNNNNNGTC 1 cut(s) 509
DseDI GACNNNNNNGTC 1 cut(s) 509
EaeI YGGCCR 1 cut(s) 172
Eam1104I CTCTTC 4 cut(s) 45, 366, 402, 925
EarI CTCTTC 4 cut(s) 45, 366, 402, 925
EciI GGCGGA 1 cut(s) 581
Ecl136II GAGCTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 267, 717
Eco24I GRGCYC 1 cut(s) 92
Eco53kI GAGCTC 1 cut(s) 90
Eco57I CTGAAG 1 cut(s) 545
EcoICRI GAGCTC 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 834
EcoRII CCWGG 2 cut(s) 660, 812
EcoT14I CCWWGG 2 cut(s) 267, 717
EcoT38I GRGCYC 1 cut(s) 92
ErhI CCWWGG 2 cut(s) 267, 717
FaeI CATG 3 cut(s) 639, 985, 1064
FaiI YATR 9 cut(s) 496, 632, 637, 724, 804, 840, 880, 983, 1062
FalI AAGNNNNNCTT 2 cut(s) 904, 936
FaqI GGGAC 1 cut(s) 992
FatI CATG 3 cut(s) 635, 981, 1060
FbaI TGATCA 2 cut(s) 733, 793
FblI GTMKAC 1 cut(s) 596
Fnu4HI GCNGC 4 cut(s) 443, 492, 527, 557
FokI GGATG 2 cut(s) 700, 988
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 4 cut(s) 443, 492, 527, 557
FspBI CTAG 2 cut(s) 446, 474
GlaI GCGC 1 cut(s) 273
GluI GCNGC 4 cut(s) 443, 492, 527, 557
GsuI CTGGAG 1 cut(s) 992
HaeIII GGCC 2 cut(s) 174, 835
HapII CCGG 3 cut(s) 171, 189, 314
HgaI GACGC 1 cut(s) 139
HhaI GCGC 1 cut(s) 274
Hin1II CATG 3 cut(s) 639, 985, 1064
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 7 cut(s) 15, 221, 431, 587, 640, 665, 902
HpaII CCGG 3 cut(s) 171, 189, 314
HphI GGTGA 3 cut(s) 139, 202, 803
Hpy166II GTNNAC 1 cut(s) 597
Hpy188I TCNGA 6 cut(s) 87, 502, 576, 694, 907, 925
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 597
Hpy99I CGWCG 2 cut(s) 109, 203
HpyAV CCTTC 3 cut(s) 243, 906, 922
HpyCH4III ACNGT 2 cut(s) 83, 1029
HpyCH4IV ACGT 2 cut(s) 356, 510
HpyCH4V TGCA 6 cut(s) 389, 414, 494, 626, 806, 935
HpyF10VI GCNNNNNNNGC 4 cut(s) 150, 278, 523, 770
HpyF3I CTNAG 3 cut(s) 438, 904, 1089
HpySE526I ACGT 2 cut(s) 356, 510
Hsp92II CATG 3 cut(s) 639, 985, 1064
HspAI GCGC 1 cut(s) 272
Kpn2I TCCGGA 1 cut(s) 313
Ksp22I TGATCA 2 cut(s) 733, 793
Kzo9I GATC 3 cut(s) 532, 733, 793
LmnI GCTCC 6 cut(s) 87, 95, 158, 197, 231, 759
Lsp1109I GCAGC 4 cut(s) 429, 478, 513, 568
LweI GCATC 4 cut(s) 376, 635, 892, 1010
MaeI CTAG 2 cut(s) 446, 474
MaeII ACGT 2 cut(s) 356, 510
MaeIII GTNAC 3 cut(s) 127, 323, 947
MalI GATC 3 cut(s) 534, 735, 795
MboI GATC 3 cut(s) 532, 733, 793
MhlI GDGCHC 2 cut(s) 92, 820
MluCI AATT 8 cut(s) 455, 542, 570, 688, 709, 728, 846, 1042
MlyI GAGTC 3 cut(s) 9, 215, 896
MmeI TCCRAC 1 cut(s) 65
MroI TCCGGA 1 cut(s) 313
MseI TTAA 3 cut(s) 423, 708, 893
MspA1I CMGCKG 1 cut(s) 442
MspI CCGG 3 cut(s) 171, 189, 314
MspR9I CCNGG 2 cut(s) 662, 814
MvaI CCWGG 2 cut(s) 662, 814
MwoI GCNNNNNNNGC 4 cut(s) 150, 278, 523, 770
NdeII GATC 3 cut(s) 532, 733, 793
NlaIII CATG 3 cut(s) 639, 985, 1064
NlaIV GGNNCC 6 cut(s) 145, 193, 309, 755, 819, 1080
NmuCI GTSAC 3 cut(s) 127, 323, 947
PaqCI CACCTGC 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PfeI GAWTC 4 cut(s) 431, 587, 640, 665
PflMI CCANNNNNTGG 2 cut(s) 723, 827
PkrI GCNGC 4 cut(s) 444, 493, 528, 558
PleI GAGTC 3 cut(s) 9, 215, 896
PpsI GAGTC 3 cut(s) 9, 215, 896
Psp124BI GAGCTC 1 cut(s) 92
Psp1406I AACGTT 1 cut(s) 356
Psp6I CCWGG 2 cut(s) 660, 812
PspGI CCWGG 2 cut(s) 660, 812
PspN4I GGNNCC 6 cut(s) 145, 193, 309, 755, 819, 1080
PspPI GGNCC 1 cut(s) 834
PvuII CAGCTG 1 cut(s) 442
RsaI GTAC 2 cut(s) 31, 1026
RsaNI GTAC 2 cut(s) 30, 1025
SacI GAGCTC 1 cut(s) 92
SaqAI TTAA 3 cut(s) 423, 708, 893
SatI GCNGC 4 cut(s) 443, 492, 527, 557
Sau3AI GATC 3 cut(s) 532, 733, 793
Sau96I GGNCC 1 cut(s) 834
SchI GAGTC 3 cut(s) 9, 215, 896
ScrFI CCNGG 2 cut(s) 662, 814
SduI GDGCHC 2 cut(s) 92, 820
SfaNI GCATC 4 cut(s) 376, 635, 892, 1010
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 8 cut(s) 455, 542, 570, 688, 709, 728, 846, 1042
SsiI CCGC 3 cut(s) 345, 566, 764
SspMI CTAG 2 cut(s) 446, 474
SstI GAGCTC 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 660, 812
StyI CCWWGG 2 cut(s) 267, 717
TaaI ACNGT 2 cut(s) 83, 1029
TaiI ACGT 2 cut(s) 359, 513
TaqI TCGA 4 cut(s) 18, 135, 198, 219
TaqII GACCGA 1 cut(s) 311
TasI AATT 8 cut(s) 455, 542, 570, 688, 709, 728, 846, 1042
TfiI GAWTC 4 cut(s) 431, 587, 640, 665
Tru1I TTAA 3 cut(s) 423, 708, 893
Tru9I TTAA 3 cut(s) 423, 708, 893
TscAI CASTG 3 cut(s) 336, 597, 1012
TseFI GTSAC 3 cut(s) 127, 323, 947
TseI GCWGC 4 cut(s) 442, 491, 526, 556
Tsp45I GTSAC 3 cut(s) 127, 323, 947
TspDTI ATGAA 4 cut(s) 17, 456, 702, 1077
TspGWI ACGGA 2 cut(s) 122, 216
TspRI CASTG 3 cut(s) 336, 597, 1012
Van91I CCANNNNNTGG 2 cut(s) 723, 827
XapI RAATTY 2 cut(s) 570, 728
XmiI GTMKAC 1 cut(s) 596
XspI CTAG 2 cut(s) 446, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.