Rmu_sc0039338.1_g000002

UDP-glucoronosyl and UDP-glucosyl transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039338.1
OG0000558
Physical Location & Seq
Forward (+)
2366 .. 3549
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039338.1_g000002.1.cds

Sequence Viewer

Length: 1095 bp
atggaaccagccggccacgtcgccattatcccaactccaggtttaggccacctgatacccctgctcgagctggccaaacgacttgtcgtccagcacaacttcaccatcaccgtcctcatccccaacgacggcacgaacctgacaccgcaaaagaaagtcctggaagctttgtcggagaccatatcctccaccttcctccctcccgtcaacttcgacgacctcccaccagaatcggcgatggaaaccaagatcgctctcaccttggctcggtcactctccgctatccgcgactcagttaaggccctagcggagtcgactcggctggtggcgcttgttgttgatctctttggtcttgaagcctttgacgtggccaatgagtttaatgtgctgccctaccttttctttcctactactgcaatgcttttgtggtttgtgtttgagttgccaaagcttgacgagacaactacatgtgagtacagggatttacctgaaccggtccagcttccgggttgtgtgccgctccatggtagagacttcacagagccggttcaagatcggagcaatgaggcttataaggcgatagtccgcatctgcaagatgtataagtcggctggtgggatcatggtgaatagctttgcggatttggaaccgggtgctttcaaggctttcaaggagcaaggaccaagtcttggtcttccaccggtttacccggtcggaccgaaaataaagaccggttcggcgaatgagatgggtgagaatgagtgcctgagctggttggatggtcagccaaaagggtcagtgttgtttgtttcatttggaagtggtggaaccctcaccgctgagcaaatgaatgagttggctttagggcttgaaatgagtagggtcaggtttctttgggttgctaggagtccaaatgagaaacaaaatgctacatattttggtgctcaaggtccaaattttgagtcacacatcgacgggcggttttttgacccattgcgggtggaactcaaccctagagagcattgtacatggcgtgcctttaattgcttggccgctctatgccgagcaaaaaatgaacgttgttttgcttgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

364

Amino Acids

40.13

Weight (kDa)

5.32

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AccB7I CCANNNNNTGG 1 cut(s) 689
AccBSI CCGCTC 2 cut(s) 520, 1055
AccI GTMKAC 1 cut(s) 314
AccII CGCG 1 cut(s) 288
AclI AACGTT 1 cut(s) 1078
AclWI GGATC 1 cut(s) 626
AcoI YGGCCR 4 cut(s) 13, 72, 369, 1050
AcsI RAATTY 1 cut(s) 955
AfaI GTAC 2 cut(s) 476, 1027
AfiI CCNNNNNNNGG 8 cut(s) 38, 44, 128, 267, 505, 524, 689, 997
AflIII ACRYGT 1 cut(s) 467
AgeI ACCGGT 3 cut(s) 493, 700, 731
AgsI TTSAA 5 cut(s) 356, 551, 661, 670, 872
AhdI GACNNNNNGTC 1 cut(s) 86
AjiI CACGTC 2 cut(s) 19, 367
AjnI CCWGG 2 cut(s) 37, 159
AluBI AGCT 6 cut(s) 70, 167, 451, 502, 633, 771
AluI AGCT 6 cut(s) 70, 167, 451, 502, 633, 771
Alw21I GWGCWC 1 cut(s) 946
Alw26I GTCTC 3 cut(s) 170, 452, 525
AlwI GGATC 1 cut(s) 626
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 6 cut(s) 13, 46, 72, 300, 369, 1050
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 955
ArsI GACNNNNNNTTYG 4 cut(s) 69, 101, 947, 979
AsiGI ACCGGT 3 cut(s) 493, 700, 731
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 5 cut(s) 301, 496, 680, 716, 950
AsuC2I CCSGG 3 cut(s) 507, 651, 710
AsuHPI GGTGA 6 cut(s) 94, 100, 250, 637, 764, 826
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 4 cut(s) 496, 680, 716, 950
BalI TGGCCA 2 cut(s) 74, 371
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 946
BbvI GCAGC 1 cut(s) 375
BccI CCATC 4 cut(s) 113, 232, 742, 773
BceAI ACGGC 1 cut(s) 145
BciT130I CCWGG 2 cut(s) 39, 161
BcnI CCSGG 3 cut(s) 507, 651, 710
BcoDI GTCTC 3 cut(s) 170, 452, 525
BfaI CTAG 3 cut(s) 305, 903, 1014
BfoI RGCGCY 1 cut(s) 332
BisI GCNGC 3 cut(s) 389, 518, 1053
BlpI GCTNAGC 1 cut(s) 840
BlsI GCNGC 3 cut(s) 390, 519, 1054
Bme1390I CCNGG 5 cut(s) 39, 161, 507, 651, 710
Bme18I GGWCC 4 cut(s) 496, 680, 716, 950
BmeRI GACNNNNNGTC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 65
BmgBI CACGTC 2 cut(s) 19, 367
BmgT120I GGNCC 5 cut(s) 301, 496, 680, 716, 950
BmiI GGNNCC 3 cut(s) 6, 648, 829
BmrFI CCNGG 5 cut(s) 39, 161, 507, 651, 710
BmsI GCATC 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 686
BpmI CTGGAG 1 cut(s) 21
Bpu10I CCTNAGC 1 cut(s) 767
Bpu1102I GCTNAGC 1 cut(s) 840
BpuEI CTTGAG 1 cut(s) 930
BpuMI CCSGG 3 cut(s) 507, 651, 710
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 261, 523
BsaWI WCCGGW 3 cut(s) 493, 700, 731
Bsc4I CCNNNNNNNGG 8 cut(s) 38, 44, 128, 267, 505, 524, 689, 997
Bse118I RCCGGY 5 cut(s) 11, 493, 544, 700, 731
Bse3DI GCAATG 3 cut(s) 423, 568, 992
BseBI CCWGG 2 cut(s) 39, 161
BseDI CCNNGG 2 cut(s) 261, 523
BseGI GGATG 2 cut(s) 117, 784
BseLI CCNNNNNNNGG 8 cut(s) 38, 44, 128, 267, 505, 524, 689, 997
BseMI GCAATG 3 cut(s) 423, 568, 992
BseMII CTCAG 3 cut(s) 306, 758, 831
BseXI GCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 1 cut(s) 714
BshFI GGCC 6 cut(s) 15, 48, 74, 302, 371, 1052
BshTI ACCGGT 3 cut(s) 493, 700, 731
BsiEI CGRYCG 1 cut(s) 714
BsiHKAI GWGCWC 1 cut(s) 946
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 8 cut(s) 12, 494, 506, 545, 650, 701, 710, 732
BslI CCNNNNNNNGG 8 cut(s) 38, 44, 128, 267, 505, 524, 689, 997
BsmAI GTCTC 3 cut(s) 170, 452, 525
BsnI GGCC 6 cut(s) 15, 48, 74, 302, 371, 1052
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 946
Bsp1407I TGTACA 1 cut(s) 1025
Bsp143I GATC 4 cut(s) 249, 340, 553, 618
Bsp1720I GCTNAGC 1 cut(s) 840
Bsp19I CCATGG 1 cut(s) 523
BspANI GGCC 6 cut(s) 15, 48, 74, 302, 371, 1052
BspCNI CTCAG 3 cut(s) 305, 759, 832
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 3 cut(s) 6, 648, 829
BspPI GGATC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 2 cut(s) 520, 1055
BsrDI GCAATG 3 cut(s) 423, 568, 992
BsrFI RCCGGY 5 cut(s) 11, 493, 544, 700, 731
BsrGI TGTACA 1 cut(s) 1025
BssAI RCCGGY 5 cut(s) 11, 493, 544, 700, 731
BssECI CCNNGG 2 cut(s) 261, 523
BssMI GATC 4 cut(s) 249, 340, 553, 618
BssT1I CCWWGG 2 cut(s) 261, 523
Bst2UI CCWGG 2 cut(s) 39, 161
Bst4CI ACNGT 1 cut(s) 112
BstAUI TGTACA 1 cut(s) 1025
BstC8I GCNNGC 4 cut(s) 13, 72, 1035, 1090
BstDEI CTNAG 3 cut(s) 292, 767, 840
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 2 cut(s) 117, 784
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 4 cut(s) 252, 343, 556, 621
BstMAI GTCTC 3 cut(s) 170, 452, 525
BstMBI GATC 4 cut(s) 249, 340, 553, 618
BstMCI CGRYCG 1 cut(s) 714
BstMWI GCNNNNNNNGC 3 cut(s) 328, 575, 662
BstNI CCWGG 2 cut(s) 39, 161
BstNSI RCATGY 1 cut(s) 471
BstSCI CCNGG 5 cut(s) 37, 159, 505, 649, 708
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 375
BstV2I GAAGAC 1 cut(s) 686
BsuRI GGCC 6 cut(s) 15, 48, 74, 302, 371, 1052
BtgI CCRYGG 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 251
BtrI CACGTC 2 cut(s) 19, 367
BtsCI GGATG 2 cut(s) 117, 784
BtsIMutI CAGTG 1 cut(s) 804
Cac8I GCNNGC 4 cut(s) 13, 72, 1035, 1090
CfoI GCGC 1 cut(s) 331
Cfr10I RCCGGY 5 cut(s) 11, 493, 544, 700, 731
Cfr13I GGNCC 5 cut(s) 301, 496, 680, 716, 950
CpoI CGGWCCG 1 cut(s) 716
Csp6I GTAC 2 cut(s) 475, 1026
CspAI ACCGGT 3 cut(s) 493, 700, 731
CspI CGGWCCG 1 cut(s) 716
CviAII CATG 4 cut(s) 468, 524, 622, 1029
CviQI GTAC 2 cut(s) 475, 1026
DdeI CTNAG 3 cut(s) 292, 767, 840
DpnI GATC 4 cut(s) 251, 342, 555, 620
DpnII GATC 4 cut(s) 249, 340, 553, 618
DriI GACNNNNNGTC 1 cut(s) 86
EaeI YGGCCR 4 cut(s) 13, 72, 369, 1050
Eam1105I GACNNNNNGTC 1 cut(s) 86
Eco130I CCWWGG 2 cut(s) 261, 523
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 4 cut(s) 496, 680, 716, 950
Eco88I CYCGRG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 37, 159
EcoT14I CCWWGG 2 cut(s) 261, 523
ErhI CCWWGG 2 cut(s) 261, 523
FaeI CATG 4 cut(s) 471, 527, 625, 1032
FaiI YATR 9 cut(s) 182, 469, 525, 573, 603, 623, 934, 1030, 1060
FatI CATG 4 cut(s) 467, 523, 621, 1028
FauI CCCGC 1 cut(s) 990
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 3 cut(s) 389, 518, 1053
FokI GGATG 2 cut(s) 104, 791
Fsp4HI GCNGC 3 cut(s) 389, 518, 1053
FspBI CTAG 3 cut(s) 305, 903, 1014
GlaI GCGC 1 cut(s) 330
GluI GCNGC 3 cut(s) 389, 518, 1053
GsuI CTGGAG 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 6 cut(s) 15, 48, 74, 302, 371, 1052
HapII CCGG 8 cut(s) 12, 494, 506, 545, 650, 701, 710, 732
HhaI GCGC 1 cut(s) 331
Hin1II CATG 4 cut(s) 471, 527, 625, 1032
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HincII GTYRAC 2 cut(s) 208, 315
HindII GTYRAC 2 cut(s) 208, 315
HindIII AAGCTT 2 cut(s) 165, 449
HinfI GANTC 6 cut(s) 230, 290, 311, 316, 907, 962
HpaII CCGG 8 cut(s) 12, 494, 506, 545, 650, 701, 710, 732
HphI GGTGA 6 cut(s) 94, 100, 250, 637, 764, 826
Hpy166II GTNNAC 3 cut(s) 208, 315, 706
Hpy188I TCNGA 3 cut(s) 175, 558, 716
Hpy188III TCNNGA 2 cut(s) 353, 551
Hpy8I GTNNAC 3 cut(s) 208, 315, 706
Hpy99I CGWCG 4 cut(s) 23, 131, 218, 977
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4IV ACGT 3 cut(s) 18, 366, 1078
HpyCH4V TGCA 2 cut(s) 416, 594
HpyF10VI GCNNNNNNNGC 3 cut(s) 328, 575, 662
HpyF3I CTNAG 3 cut(s) 292, 767, 840
HpySE526I ACGT 3 cut(s) 18, 366, 1078
Hsp92II CATG 4 cut(s) 471, 527, 625, 1032
HspAI GCGC 1 cut(s) 329
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 4 cut(s) 249, 340, 553, 618
LmnI GCTCC 3 cut(s) 525, 558, 673
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 597
MaeI CTAG 3 cut(s) 305, 903, 1014
MaeII ACGT 3 cut(s) 18, 366, 1078
MaeIII GTNAC 2 cut(s) 270, 963
MalI GATC 4 cut(s) 251, 342, 555, 620
MbiI CCGCTC 2 cut(s) 520, 1055
MboI GATC 4 cut(s) 249, 340, 553, 618
MboII GAAGA 1 cut(s) 686
MhlI GDGCHC 1 cut(s) 946
MlsI TGGCCA 2 cut(s) 74, 371
MluCI AATT 2 cut(s) 955, 1042
MluNI TGGCCA 2 cut(s) 74, 371
MlyI GAGTC 5 cut(s) 284, 310, 320, 916, 971
MmeI TCCRAC 3 cut(s) 153, 694, 756
MnlI CCTC 7 cut(s) 125, 196, 206, 210, 230, 559, 842
Mox20I TGGCCA 2 cut(s) 74, 371
MroNI GCCGGC 1 cut(s) 11
MscI TGGCCA 2 cut(s) 74, 371
MseI TTAA 3 cut(s) 297, 381, 1041
Msp20I TGGCCA 2 cut(s) 74, 371
MspA1I CMGCKG 1 cut(s) 839
MspI CCGG 8 cut(s) 12, 494, 506, 545, 650, 701, 710, 732
MspR9I CCNGG 5 cut(s) 39, 161, 507, 651, 710
MvaI CCWGG 2 cut(s) 39, 161
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 328, 575, 662
NaeI GCCGGC 1 cut(s) 13
NciI CCSGG 3 cut(s) 507, 651, 710
NcoI CCATGG 1 cut(s) 523
NdeII GATC 4 cut(s) 249, 340, 553, 618
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 4 cut(s) 471, 527, 625, 1032
NlaIV GGNNCC 3 cut(s) 6, 648, 829
NmeAIII GCCGAG 2 cut(s) 298, 1088
NmuCI GTSAC 2 cut(s) 270, 963
NspI RCATGY 1 cut(s) 471
PaeR7I CTCGAG 1 cut(s) 65
PciI ACATGT 1 cut(s) 467
PdiI GCCGGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 230
PflFI GACNNNGTC 1 cut(s) 684
PflMI CCANNNNNTGG 1 cut(s) 689
PfoI TCCNGGA 1 cut(s) 159
PinAI ACCGGT 3 cut(s) 493, 700, 731
PkrI GCNGC 3 cut(s) 390, 519, 1054
PleI GAGTC 5 cut(s) 284, 310, 319, 915, 970
PpsI GAGTC 5 cut(s) 284, 310, 319, 915, 970
PscI ACATGT 1 cut(s) 467
PsiI TTATAA 1 cut(s) 573
Psp1406I AACGTT 1 cut(s) 1078
Psp6I CCWGG 2 cut(s) 37, 159
PspGI CCWGG 2 cut(s) 37, 159
PspN4I GGNNCC 3 cut(s) 6, 648, 829
PspPI GGNCC 5 cut(s) 301, 496, 680, 716, 950
PspXI VCTCGAGB 1 cut(s) 65
PsyI GACNNNGTC 1 cut(s) 684
RsaI GTAC 2 cut(s) 476, 1027
RsaNI GTAC 2 cut(s) 475, 1026
Rsr2I CGGWCCG 1 cut(s) 716
RsrII CGGWCCG 1 cut(s) 716
SalI GTCGAC 1 cut(s) 313
SaqAI TTAA 3 cut(s) 297, 381, 1041
SatI GCNGC 3 cut(s) 389, 518, 1053
Sau3AI GATC 4 cut(s) 249, 340, 553, 618
Sau96I GGNCC 5 cut(s) 301, 496, 680, 716, 950
SchI GAGTC 5 cut(s) 284, 310, 320, 916, 971
ScrFI CCNGG 5 cut(s) 39, 161, 507, 651, 710
SduI GDGCHC 1 cut(s) 946
SfaNI GCATC 1 cut(s) 597
Sfr274I CTCGAG 1 cut(s) 65
SinI GGWCC 4 cut(s) 496, 680, 716, 950
SlaI CTCGAG 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 65, 945
SmoI CTYRAG 2 cut(s) 65, 945
Sse9I AATT 2 cut(s) 955, 1042
SspMI CTAG 3 cut(s) 305, 903, 1014
StyD4I CCNGG 5 cut(s) 37, 159, 505, 649, 708
StyI CCWWGG 2 cut(s) 261, 523
TaaI ACNGT 1 cut(s) 112
TaiI ACGT 3 cut(s) 21, 369, 1081
TaqI TCGA 4 cut(s) 66, 213, 314, 972
TaqII GACCGA 2 cut(s) 258, 733
TasI AATT 2 cut(s) 955, 1042
TatI WGTACW 2 cut(s) 474, 1025
TauI GCSGC 2 cut(s) 520, 1055
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 297, 381, 1041
Tru9I TTAA 3 cut(s) 297, 381, 1041
TscAI CASTG 1 cut(s) 804
TseFI GTSAC 2 cut(s) 270, 963
TseI GCWGC 1 cut(s) 388
Tsp45I GTSAC 2 cut(s) 270, 963
TspDTI ATGAA 3 cut(s) 801, 863, 1089
TspRI CASTG 1 cut(s) 804
Tth111I GACNNNGTC 1 cut(s) 684
Van91I CCANNNNNTGG 1 cut(s) 689
VpaK11BI GGWCC 4 cut(s) 496, 680, 716, 950
XapI RAATTY 1 cut(s) 955
XceI RCATGY 1 cut(s) 471
XhoI CTCGAG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 314
XspI CTAG 3 cut(s) 305, 903, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.