Rorug07G0022300

transferase activity, transferring hexosyl groups

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000558
Physical Location & Seq
Reverse (-)
1632479 .. 1632745
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0022300.1

Sequence Viewer

Length: 267 bp
ATGCAGGCATTTGCAGCATTCAAGATTCAGATGAGGAGGTCCCGGAGGAGGAGACGTTATCGTAGGCTAGGAAGTGTGGTTATTACTGAGGAAAATGCAGCAGCAGGAGGGAGAGGGACTCTAAAGTTTTGGAAAATTAGAGTGACCCCGAAACTGCGGCTCAAGGTTACAACATCATCGATGGCTGTTCTGAGGAGGCTTAGGAATGCTTATGTGGGAATGATGCTTTGTTTTGCTGGCCGTGTTGCTCAGTTGAATTCATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

88

Amino Acids

10.22

Weight (kDa)

12.0

Isoelectric Point (pI)

64.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 157
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 48
AgsI TTSAA 2 cut(s) 22, 256
Alw26I GTCTC 1 cut(s) 46
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 3 cut(s) 14, 98, 101
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 26, 110, 113
BccI CCATC 1 cut(s) 175
BceAI ACGGC 1 cut(s) 225
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 68
BisI GCNGC 4 cut(s) 15, 99, 102, 158
BlsI GCNGC 4 cut(s) 16, 100, 103, 159
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 41
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 103, 135
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 43
Bsa29I ATCGAT 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMII CTCAG 3 cut(s) 78, 182, 263
BseRI GAGGAG 4 cut(s) 49, 61, 64, 208
BseXI GCAGC 3 cut(s) 26, 110, 113
BshFI GGCC 1 cut(s) 240
BshVI ATCGAT 1 cut(s) 179
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 25, 130
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 2 cut(s) 25, 130
BsmI GAATGC 2 cut(s) 17, 211
BsnI GGCC 1 cut(s) 240
BspACI CCGC 1 cut(s) 157
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 3 cut(s) 79, 183, 262
BspDI ATCGAT 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 41
BstC8I GCNNGC 2 cut(s) 6, 238
BstDEI CTNAG 4 cut(s) 87, 191, 200, 249
BstMAI GTCTC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 26, 110, 113
Bsu15I ATCGAT 1 cut(s) 179
BsuRI GGCC 1 cut(s) 240
BsuTUI ATCGAT 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 6, 238
Cfr13I GGNCC 1 cut(s) 39
ClaI ATCGAT 1 cut(s) 179
CviAII CATG 1 cut(s) 261
CviJI RGCY 5 cut(s) 67, 160, 185, 199, 240
CviKI_1 RGCY 5 cut(s) 67, 160, 185, 199, 240
DdeI CTNAG 4 cut(s) 87, 191, 200, 249
EaeI YGGCCR 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 39
EcoRI GAATTC 1 cut(s) 256
Esp3I CGTCTC 1 cut(s) 46
FaeI CATG 1 cut(s) 264
FaiI YATR 2 cut(s) 213, 262
FaqI GGGAC 2 cut(s) 25, 130
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 4 cut(s) 15, 99, 102, 158
Fsp4HI GCNGC 4 cut(s) 15, 99, 102, 158
FspBI CTAG 1 cut(s) 68
GluI GCNGC 4 cut(s) 15, 99, 102, 158
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 43
Hin1II CATG 1 cut(s) 264
HinfI GANTC 2 cut(s) 25, 118
HpaII CCGG 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 30, 192
Hpy188III TCNNGA 1 cut(s) 22
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 4, 14, 98
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 4 cut(s) 87, 191, 200, 249
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 264
LpnPI CCDG 3 cut(s) 56, 90, 222
Lsp1109I GCAGC 3 cut(s) 26, 110, 113
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 142, 166
MluCI AATT 2 cut(s) 135, 256
MlyI GAGTC 1 cut(s) 112
MnlI CCTC 9 cut(s) 27, 30, 39, 42, 82, 101, 107, 186, 189
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 2 cut(s) 17, 211
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 1 cut(s) 43
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 142
PctI GAATGC 2 cut(s) 17, 211
PfeI GAWTC 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 4 cut(s) 16, 100, 103, 159
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 39
PspPPI RGGWCCY 1 cut(s) 39
SatI GCNGC 4 cut(s) 15, 99, 102, 158
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 112
ScrFI CCNGG 1 cut(s) 43
SetI ASST 3 cut(s) 41, 58, 168
SfaNI GCATC 1 cut(s) 213
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 135, 256
SsiI CCGC 1 cut(s) 157
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 58
TaqI TCGA 1 cut(s) 179
TasI AATT 2 cut(s) 135, 256
TauI GCSGC 1 cut(s) 160
TfiI GAWTC 1 cut(s) 25
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 3 cut(s) 14, 98, 101
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 256
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.