MD14G1133100.v1.1

Belongs to the WD repeat SEC13 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
21113687 .. 21114608
922 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1133100.v1.1.491

Sequence Viewer

Length: 828 bp
ATGGAGAAACCTTTGGTGGTGCTTGATAAAGACACCATCTGCTCGTCGTGGAACTACTTCAGCCAGAGATTAGCTAGTGGTTCCGCCGACAAAACCTTCGCCATCTTCGACTCACTTGACTCTTGTTTTTCATCCTTCTTCTGCACCTCAAAATCCAAGGTGCACGAGGCTGTTGGAATTTGGCGTGTCTGTGCAGATGGAACTTTATCATTGTGGGAGGAAGTTGTTGAAGATGCACAACCTCTTCAATGGAAGCTGTGCATAAGCTTTAATAGTGGTTCGGCTCAACTGCTAGATACCCAAATTAGAGTATCACCGGCAACTTTAAAAATGGTTATTGCATATTCAAATGCTCGTGCTGAATTTCAGAGTGTTATTGATTCGGTGTCTACAGTTGGCCATGCCATATGCTTATTTGCATCTATATCTTGGAATCCACAAAGAGGAGAAAGCCAGGAATCAAGTTTTGTTTTGGGTTTCAATTCAAACGCACCACAACTTAATTCCGCCAAGGTATCAGAATTTGATCAGGCTCACCAAAGATGGCTCCCAGTTGCAGAATTGGCTTCGCCTAGTGACAATGGTGATCAGGTCTATGCAGTTGCGTGGGCACTGAACATTGGAAGGCCATATGAGGTAATTGTTGTTGCCACTCACAAGGGAATATCAATATGGCATCTTGGGTTAAACCTTGACTTGGATGGAAGGCTATCATTGGAGAAAATTGCACTACTTTCAGGTCACAAAGGTGAGGTCTGGCAAATGGAATTGGACATGAGTGGAATGACGTTGGCAACCACCAGAAATGATGGGGCTGTACGGTTGTAG

Protein Analysis

276

Amino Acids

30.22

Weight (kDa)

5.12

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64350
fragaria_vesca FvH4_5g04160 FvH4_5g04161 FvH4_5g04200 FvH4_5g04210 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211 FvH4_5g04211
malus_domestica MD06G1103300.v1.1 MD06G1103400.v1.1 MD06G1103500.v1.1 MD06G1103600.v1.1 MD06G1103700.v1.1 MD06G1116200.v1.1 MD14G1122800.v1.1 MD14G1133100.v1.1
prunus_persica Prupe.5G116100_v2.0.a1 Prupe.5G116300_v2.0.a1 Prupe.I001100_v2.0.a1
pyrus_communis pycom03g16970 pycom06g09790 pycom06g09810 pycom06g09830 pycom06g09840
rosa_chinensis RchiOBHm_Chr7g0195271 RchiOBHm_Chr7g0195281 RchiOBHm_Chr7g0195291 RchiOBHm_Chr7g0195301 RchiOBHm_Chr7g0195311 RchiOBHm_Chr7g0222791
rosa_laevigata RLG00000004129 RLG00000004130 RLG00000004133 RLG00000004134 RLG00000004135
rosa_multiflora Rmu_co8481937.1_g000001 Rmu_sc0002381.1_g000002 Rmu_sc0002381.1_g000003 Rmu_sc0002381.1_g000007 Rmu_sc0002881.1_g000005 Rmu_sc0007366.1_g000001 Rmu_sc0011789.1_g000001 Rmu_sc0039338.1_g000002 Rmu_sc0039339.1_g000002
rosa_roxburghii Rroxscaffold_3G00235780 Rroxscaffold_3G00260600 Rroxscaffold_3G00260620 Rroxscaffold_3G00260630
rosa_rugosa Rorug07G0022200 Rorug07G0022300 Rorug07G0022400 Rorug07G0022500 Rorug07G0022600 Rorug07G0216900
rosa_samantha Rh7AG149300 Rh7AG149400 Rh7AG149500 Rh7AG149600 Rh7AG149700 Rh7AG356800 Rh7BG150500 Rh7BG150600 Rh7BG150700 Rh7BG150800 Rh7BG150900 Rh7BG151200 Rh7BG350700 Rh7CG154100 Rh7CG154200 Rh7CG154300 Rh7CG154700 Rh7CG374200 Rh7DG150500 Rh7DG150600 Rh7DG150700 Rh7DG150800 Rh7DG150900
rosa_wichuraiana Rw7G012750 Rw7G012760 Rw7G012770 Rw7G012780 Rw7G030260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 389
AciI CCGC 2 cut(s) 84, 507
AcoI YGGCCR 1 cut(s) 397
AcsI RAATTY 3 cut(s) 177, 362, 521
AcuI CTGAAG 1 cut(s) 43
AfaI GTAC 1 cut(s) 819
AfiI CCNNNNNNNGG 2 cut(s) 443, 697
AgsI TTSAA 5 cut(s) 230, 248, 348, 481, 486
AjnI CCWGG 1 cut(s) 453
AleI CACNNNNGTG 1 cut(s) 747
AluBI AGCT 3 cut(s) 74, 256, 267
AluI AGCT 3 cut(s) 74, 256, 267
Alw21I GWGCWC 1 cut(s) 165
Alw44I GTGCAC 1 cut(s) 161
AoxI GGCC 2 cut(s) 397, 626
ApaLI GTGCAC 1 cut(s) 161
ApoI RAATTY 3 cut(s) 177, 362, 521
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 738, 770
Asp700I GAANNNNTTC 1 cut(s) 56
AsuHPI GGTGA 4 cut(s) 306, 527, 596, 761
BaeGI GKGCMC 2 cut(s) 165, 613
BalI TGGCCA 1 cut(s) 399
BauI CACGAG 2 cut(s) 164, 354
Bbv12I GWGCWC 1 cut(s) 165
BccI CCATC 6 cut(s) 44, 110, 191, 537, 695, 803
BciT130I CCWGG 1 cut(s) 455
BclI TGATCA 2 cut(s) 526, 586
BfaI CTAG 3 cut(s) 75, 293, 573
BfmI CTRYAG 1 cut(s) 390
Bme1390I CCNGG 1 cut(s) 455
BmiI GGNNCC 2 cut(s) 82, 548
BmrFI CCNGG 1 cut(s) 455
BmrI ACTGGG 1 cut(s) 545
BmsI GCATC 3 cut(s) 223, 428, 685
BmuI ACTGGG 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 156, 510
Bsc4I CCNNNNNNNGG 2 cut(s) 443, 697
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 551
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 156, 510
BseGI GGATG 2 cut(s) 131, 706
BseLI CCNNNNNNNGG 2 cut(s) 443, 697
BseNI ACTGG 1 cut(s) 551
BseRI GAGGAG 1 cut(s) 459
BseSI GKGCMC 2 cut(s) 165, 613
BsgI GTGCAG 2 cut(s) 127, 213
BshFI GGCC 2 cut(s) 399, 628
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 317
BslI CCNNNNNNNGG 2 cut(s) 443, 697
BsnI GGCC 2 cut(s) 399, 628
Bsp1286I GDGCHC 2 cut(s) 165, 613
Bsp143I GATC 2 cut(s) 526, 586
BspACI CCGC 2 cut(s) 84, 507
BspANI GGCC 2 cut(s) 399, 628
BspLI GGNNCC 2 cut(s) 82, 548
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 1 cut(s) 551
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 2 cut(s) 156, 510
BssMI GATC 2 cut(s) 526, 586
BssSI CACGAG 2 cut(s) 164, 354
BssT1I CCWWGG 2 cut(s) 156, 510
Bst2BI CACGAG 2 cut(s) 164, 354
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 2 cut(s) 394, 822
Bst6I CTCTTC 1 cut(s) 249
BstF5I GGATG 2 cut(s) 131, 706
BstKTI GATC 2 cut(s) 529, 589
BstMBI GATC 2 cut(s) 526, 586
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 390
BstSLI GKGCMC 2 cut(s) 165, 613
BsuRI GGCC 2 cut(s) 399, 628
BtsCI GGATG 2 cut(s) 131, 706
BtsIMutI CAGTG 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 316
Csp6I GTAC 1 cut(s) 818
CviAII CATG 2 cut(s) 401, 775
CviQI GTAC 1 cut(s) 818
DpnI GATC 2 cut(s) 528, 588
DpnII GATC 2 cut(s) 526, 586
DraI TTTAAA 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 397
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EciI GGCGGA 2 cut(s) 73, 496
Eco130I CCWWGG 2 cut(s) 156, 510
Eco57I CTGAAG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 453
EcoT14I CCWWGG 2 cut(s) 156, 510
ErhI CCWWGG 2 cut(s) 156, 510
FaeI CATG 2 cut(s) 404, 778
FatI CATG 2 cut(s) 400, 774
FauNDI CATATG 2 cut(s) 407, 631
FbaI TGATCA 2 cut(s) 526, 586
FblI GTMKAC 1 cut(s) 389
FokI GGATG 2 cut(s) 118, 713
FspBI CTAG 3 cut(s) 75, 293, 573
HaeIII GGCC 2 cut(s) 399, 628
HapII CCGG 1 cut(s) 317
Hin1II CATG 2 cut(s) 404, 778
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 5 cut(s) 110, 119, 380, 433, 458
HpaII CCGG 1 cut(s) 317
HphI GGTGA 4 cut(s) 306, 527, 596, 761
Hpy166II GTNNAC 2 cut(s) 163, 390
Hpy188I TCNGA 2 cut(s) 369, 520
Hpy8I GTNNAC 2 cut(s) 163, 390
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 4 cut(s) 106, 145, 618, 699
HpyCH4III ACNGT 2 cut(s) 394, 822
HpyCH4IV ACGT 1 cut(s) 788
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
HpySE526I ACGT 1 cut(s) 788
Hsp92II CATG 2 cut(s) 404, 778
Ksp22I TGATCA 2 cut(s) 526, 586
Kzo9I GATC 2 cut(s) 526, 586
LmnI GCTCC 1 cut(s) 552
LweI GCATC 3 cut(s) 223, 428, 685
MaeI CTAG 3 cut(s) 75, 293, 573
MaeII ACGT 1 cut(s) 788
MaeIII GTNAC 2 cut(s) 575, 740
MalI GATC 2 cut(s) 528, 588
MboI GATC 2 cut(s) 526, 586
MboII GAAGA 4 cut(s) 97, 130, 236, 242
MhlI GDGCHC 2 cut(s) 165, 613
MlsI TGGCCA 1 cut(s) 399
MluNI TGGCCA 1 cut(s) 399
MlyI GAGTC 2 cut(s) 104, 113
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 7 cut(s) 157, 160, 211, 252, 437, 628, 745
Mox20I TGGCCA 1 cut(s) 399
MroXI GAANNNNTTC 1 cut(s) 56
MscI TGGCCA 1 cut(s) 399
MseI TTAA 4 cut(s) 270, 326, 501, 686
MslI CAYNNNNRTG 1 cut(s) 747
Msp20I TGGCCA 1 cut(s) 399
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 1 cut(s) 455
MvaI CCWGG 1 cut(s) 455
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeI CATATG 2 cut(s) 407, 631
NdeII GATC 2 cut(s) 526, 586
NlaIII CATG 2 cut(s) 404, 778
NlaIV GGNNCC 2 cut(s) 82, 548
NmuCI GTSAC 2 cut(s) 575, 740
OliI CACNNNNGTG 1 cut(s) 747
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 56
PfeI GAWTC 3 cut(s) 380, 433, 458
PleI GAGTC 2 cut(s) 104, 113
PpsI GAGTC 2 cut(s) 104, 113
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 82, 548
RsaI GTAC 1 cut(s) 819
RsaNI GTAC 1 cut(s) 818
RseI CAYNNNNRTG 1 cut(s) 747
SaqAI TTAA 4 cut(s) 270, 326, 501, 686
Sau3AI GATC 2 cut(s) 526, 586
SchI GAGTC 2 cut(s) 104, 113
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 2 cut(s) 165, 613
SfaNI GCATC 3 cut(s) 223, 428, 685
SfcI CTRYAG 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 747
SsiI CCGC 2 cut(s) 84, 507
SspMI CTAG 3 cut(s) 75, 293, 573
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 2 cut(s) 156, 510
TaaI ACNGT 2 cut(s) 394, 822
TaiI ACGT 1 cut(s) 791
TaqI TCGA 1 cut(s) 108
TfiI GAWTC 3 cut(s) 380, 433, 458
Tru1I TTAA 4 cut(s) 270, 326, 501, 686
Tru9I TTAA 4 cut(s) 270, 326, 501, 686
TscAI CASTG 1 cut(s) 618
TseFI GTSAC 2 cut(s) 575, 740
Tsp45I GTSAC 2 cut(s) 575, 740
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 1 cut(s) 618
VneI GTGCAC 1 cut(s) 161
XapI RAATTY 3 cut(s) 177, 362, 521
XmiI GTMKAC 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 56
XspI CTAG 3 cut(s) 75, 293, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.